<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Could you please forward configure.log to <a href="mailto:petsc-maint@mcs.anl.gov" class="">petsc-maint@mcs.anl.gov</a>?<div class="">It’ll help the SF people figure out if it’s a false positive or if something needs fixing.</div><div class=""><br class=""></div><div class="">Thanks,</div><div class="">Pierre<div class=""><div class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 12 Sep 2021, at 7:33 PM, Antonio T. sagitter <<a href="mailto:sagitter@fedoraproject.org" class="">sagitter@fedoraproject.org</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">On 9/12/21 19:29, Pierre Jolivet wrote:<br class=""><blockquote type="cite" class="">In your configure.log, I see --with-mpi=0, so I’m surprised this is even running, and even more surprised that you are encountering OpenMPI errors.<br class="">Is this from a different build?<br class=""></blockquote><br class="">Yes, sorry. This is another build with MPI.<br class=""><br class=""><blockquote type="cite" class="">Thanks,<br class="">Pierre<br class=""><blockquote type="cite" class="">On 12 Sep 2021, at 7:18 PM, Antonio T. sagitter <<a href="mailto:sagitter@fedoraproject.org" class="">sagitter@fedoraproject.org</a>> wrote:<br class=""><br class="">Okay. I will try to set correctly the DATAFILESPATH options.<br class=""><br class="">I see even this error:<br class=""><br class="">not ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # Error code: 68<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>PetscSF Object: 4 MPI processes<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> type: window<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] Number of roots=3, leaves=2, remote ranks=2<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] 0 <- (3,1)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] 1 <- (1,0)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] Number of roots=2, leaves=3, remote ranks=2<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 0 <- (0,1)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 1 <- (2,0)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 2 <- (0,2)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] Number of roots=2, leaves=3, remote ranks=3<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 0 <- (1,1)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 1 <- (3,0)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 2 <- (0,2)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] Number of roots=2, leaves=3, remote ranks=2<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 0 <- (2,1)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 1 <- (0,0)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 2 <- (0,2)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] Roots referenced by my leaves, by rank<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] 1: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] 1 <- 0<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] 3: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [0] 0 <- 1<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] Roots referenced by my leaves, by rank<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 0: 2 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 0 <- 1<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 2 <- 2<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 2: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [1] 1 <- 0<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] Roots referenced by my leaves, by rank<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 0: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 2 <- 2<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 1: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 0 <- 1<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 3: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [2] 1 <- 0<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] Roots referenced by my leaves, by rank<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 0: 2 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 1 <- 0<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 2 <- 2<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 2: 1 edges<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> [3] 0 <- 1<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> current flavor=CREATE synchronization=FENCE MultiSF sort=rank-order<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span> current info=MPI_INFO_NULL<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[buildhw-x86-09:1135574] *** reported by process [3562602497,3]<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[buildhw-x86-09:1135574] *** on win rdma window 4<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address range<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in this win will now abort,<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[buildhw-x86-09:1135574] *** and potentially your MPI job)<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[<a href="http://buildhw-x86-09.iad2.fedoraproject.org" class="">buildhw-x86-09.iad2.fedoraproject.org</a>:1135567] 3 more processes have sent help message help-mpi-errors.txt / mpi_errors_are_fatal<br class=""><br class="">#<span class="Apple-tab-span" style="white-space:pre"> </span>[<a href="http://buildhw-x86-09.iad2.fedoraproject.org" class="">buildhw-x86-09.iad2.fedoraproject.org</a>:1135567] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages<br class=""><br class="">Looks like an error related to OpenMPI-4*:<br class=""><a href="https://github.com/open-mpi/ompi/issues/6374" class="">https://github.com/open-mpi/ompi/issues/6374</a><br class=""><br class="">Thank you.<br class=""><br class="">On 9/12/21 18:09, Pierre Jolivet wrote:<br class=""><blockquote type="cite" class="">Hello,<br class="">Did you copy the files from https://gitlab.com/petsc/datafiles <https://gitlab.com/petsc/datafiles> before the make check?<br class="">cfd.1.10 is not part of https://gitlab.com/petsc/petsc <https://gitlab.com/petsc/petsc>, so you either need to copy the files from the datafiles repository, or remove the --DATAFILESPATH=/home/sagitter/rpmbuild/BUILD/petsc-3.15.4/petsc-3.15.4/share/petsc/datafiles configure option.<br class="">Thanks,<br class="">Pierre<br class=""><blockquote type="cite" class="">On 12 Sep 2021, at 6:02 PM, Antonio T. sagitter <sagitter@fedoraproject.org <mailto:sagitter@fedoraproject.org>> wrote:<br class=""><br class="">Hi all.<br class=""><br class="">This error is repeated when the tests are compiled in PETSc-3.15.4 compilation:<br class="">https://paste.in/MhdNjf <https://paste.in/MhdNjf><br class=""><br class="">This happens in Fedora 34 x86_64 with gcc-11.2.1<br class=""><br class="">make.log and configure.log are attached<br class="">-- <br class="">---<br class="">Antonio Trande<br class="">Fedora Project<br class="">mailto: sagitter@fedoraproject.org<br class="">GPG key: 0x29FBC85D7A51CC2F<br class="">GPG key server: https://keyserver1.pgp.com/<br class=""><make_configure.zip><OpenPGP_0x29FBC85D7A51CC2F.asc><br class=""></blockquote></blockquote><br class="">-- <br class="">---<br class="">Antonio Trande<br class="">Fedora Project<br class="">mailto: sagitter@fedoraproject.org<br class="">GPG key: 0x29FBC85D7A51CC2F<br class="">GPG key server: https://keyserver1.pgp.com/<br class=""></blockquote></blockquote><br class="">-- <br class="">---<br class="">Antonio Trande<br class="">Fedora Project<br class="">mailto: <a href="mailto:sagitter@fedoraproject.org" class="">sagitter@fedoraproject.org</a><br class="">GPG key: 0x29FBC85D7A51CC2F<br class="">GPG key server: <a href="https://keyserver1.pgp.com/" class="">https://keyserver1.pgp.com/</a><br class=""></div></div></blockquote></div><br class=""></div></div></div></body></html>