[petsc-dev] [EXTERNAL] Re: building on Fugaku

Mark Adams mfadams at lbl.gov
Fri Apr 16 13:09:59 CDT 2021


Sarat, is there anything special that you do for Kokkos - OpenMP?

Just set OMP_NUM_THREADS=48 ?

Also, I am confused about the number of cores here. Is 48 or 64 per
node/socket?

On Fri, Apr 16, 2021 at 2:03 PM Mark Adams <mfadams at lbl.gov> wrote:

> Cool, I have it running too. Need to add Sarat's flags and test ex2.
>
> On Fri, Apr 16, 2021 at 1:57 PM Satish Balay via petsc-dev <
> petsc-dev at mcs.anl.gov> wrote:
>
>> Mark,
>>
>> The following build works for me:
>>
>> Satish
>>
>> ----
>>
>> pjsub --interact -L "node=1" -L "rscunit=rscunit_ft01" -L
>> "elapse=1:00:00" --sparam "wait-time=1200"
>>
>> . /vol0004/apps/oss/spack/share/spack/setup-env.sh
>> spack load fujitsu-mpi%gcc
>> spack load gcc at 10.2.0 arch=linux-rhel8-a64fx
>> ./configure COPTFLAGS='-Ofast -march=armv8.2-a+sve -msve-vector-bits=512'
>> CXXOPTFLAGS='-Ofast -march=armv8.2-a+sve -msve-vector-bits=512'
>> FOPTFLAGS='-Ofast -march=armv8.2-a+sve -msve-vector-bits=512'
>> --with-openmp=1 --download-p4est --download-zlib --download-kokkos
>> --download-kokkos-kernels --download-kokkos-commit=origin/develop
>> --download-kokkos-kernels-commit=origin/develop
>> '--download-kokkos-cmake-arguments=-DBUILD_TESTING=OFF
>> -DKokkos_ENABLE_LIBDL=OFF -DKokkos_ENABLE_AGGRESSIVE_VECTORIZATION=ON'
>> --download-cmake=
>> https://github.com/Kitware/CMake/releases/download/v3.20.1/cmake-3.20.1.tar.gz
>> --download-fblaslapack=1
>> make PETSC_DIR=/vol0004/ra010009/a04201/petsc.z
>> PETSC_ARCH=arch-linux-c-debug all
>>
>>
>> To test - redo job allocation using max-proc-per-node:
>>
>> login6$ pjsub --interact -L "node=1" -L "rscunit=rscunit_ft01" -L
>> "elapse=1:00:00" --sparam "wait-time=1200" --mpi "max-proc-per-node=16"
>>
>> [a04201 at c31-3201c petsc.z]$ .
>> /vol0004/apps/oss/spack/share/spack/setup-env.sh
>> [a04201 at c31-3201c petsc.z]$ spack load fujitsu-mpi%gcc
>> [a04201 at c31-3201c petsc.z]$ spack load gcc at 10.2.0 arch=linux-rhel8-a64fx
>> [a04201 at c31-3201c petsc.z]$ make check
>> Running check examples to verify correct installation
>> Using PETSC_DIR=/vol0004/ra010009/a04201/petsc.z and
>> PETSC_ARCH=arch-linux-c-debug
>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 MPI process
>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 MPI
>> processes
>> C/C++ example src/snes/tutorials/ex3k run successfully with kokkos-kernels
>> Fortran example src/snes/tutorials/ex5f run successfully with 1 MPI
>> process
>> Completed test examples
>> [a04201 at c31-3201c petsc.z]$
>>
>
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