[petsc-dev] pipeline failure

[Matthew Knepley]

On Mon, Jul 13, 2020 at 4:54 PM Mark Adams <mfadams at lbl.gov> wrote:

> I'm not seeing Matt's allusion ... should I put this in ts/utils and
> petscts.h?
>

If it calls TS things, it must be in TS. I think you put it in dmplexts.c
for now, which is fine.

  Thanks,

     MAtt


> On Mon, Jul 13, 2020 at 4:32 PM Satish Balay <balay at mcs.anl.gov> wrote:
>
>> At Matt alluded to - its a circular dependency - hence the error.
>>
>> i.e DMPlexSNESComputeJacobianFEM() is a SNES function - so it can't be
>> called from DM sources [src/dm/impls/plex/landau/plexland.c]
>>
>> The dependency order is:
>>
>> -lpetsctao -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat
>> -lpetscvec -lpetscsys
>>
>> Satish
>>
>> On Mon, 13 Jul 2020, Mark Adams wrote:
>>
>> > I did add #include <petscts.h> to petscdmplex.h. THat is all that I can
>> see
>> > that could cause trouble.
>> >
>> > On Mon, Jul 13, 2020 at 4:11 PM Mark Adams <mfadams at lbl.gov> wrote:
>> >
>> > > THis error was in this one also, plus warnings:
>> > >
>> > > https://gitlab.com/petsc/petsc/-/jobs/636537354
>> > >
>> > >
>> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h",
>> > > line 21: warning: operands have incompatible types:
>> > > struct  {pointer to long long perm, pointer to long long invPerm} ":"
>> > > const struct  {pointer to long long perm, pointer to long long
>> invPerm}
>> > >
>> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h",
>> > > line 21: warning: operands have incompatible types:
>> > > struct  {pointer to long long perm, pointer to long long invPerm} ":"
>> > > const struct  {pointer to long long perm, pointer to long long
>> invPerm}
>> > >
>> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h",
>> > > line 19: warning: linker scope was specified more than once:
>> "PETSCFE_SetUp"
>> > >
>> > > On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams at lbl.gov> wrote:
>> > >
>> > >>
>> > >> On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley at gmail.com>
>> > >> wrote:
>> > >>
>> > >>> Do these have -single-library ?
>> > >>>
>> > >>
>> > >> This was in a single configuration, but it also happened in this one:
>> > >>
>> > >>
>> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so:
>> > >> undefined reference to `TSGetDM'
>> > >>
>> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so:
>> > >> undefined reference to `DMPlexSNESComputeJacobianFEM'
>> > >> collect2: error: ld returned 1 exit status
>> > >> gmakefile.test:185: recipe for target
>> > >> 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed
>> > >> make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96]
>> Error 1
>> > >> make[2]: *** Waiting for unfinished jobs....
>> > >>
>> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26:
>> > >> recipe for target 'allgtest-tap' failed
>> > >> make[1]: *** [allgtest-tap] Error 2
>> > >> GNUmakefile:17: recipe for target 'allgtests-tap' failed
>> > >> make: *** [allgtests-tap] Error 2
>> > >> Running after_script
>> > >>
>> > >>
>> > >>>
>> > >>>   Thanks,
>> > >>>
>> > >>>      Matt
>> > >>>
>> > >>> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams at lbl.gov> wrote:
>> > >>>
>> > >>>> I am getting this error on two pipeline tests. They don't seem to
>> have
>> > >>>> anything to do with my branch. I have gotten these several times
>> today.
>> > >>>>
>> > >>>>
>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so:
>> > >>>> undefined reference to `DMPlexSNESComputeJacobianFEM'
>> > >>>>
>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so:
>> > >>>> undefined reference to `TSGetDM'
>> > >>>> collect2: error: ld returned 1 exit status
>> > >>>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240]
>> > >>>> Error 1
>> > >>>> make[2]: *** Waiting for unfinished jobs....
>> > >>>> gmakefile.test:185: recipe for target
>> > >>>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed
>> > >>>> make[1]: *** [allgtest-tap] Error 2
>> > >>>>
>> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26:
>> > >>>> recipe for target 'allgtest-tap' failed
>> > >>>> GNUmakefile:17: recipe for target 'allgtests-tap' failed
>> > >>>> make: *** [allgtests-tap] Error 2
>> > >>>>
>> > >>>
>> > >>>
>> > >>> --
>> > >>> What most experimenters take for granted before they begin their
>> > >>> experiments is infinitely more interesting than any results to
>> which their
>> > >>> experiments lead.
>> > >>> -- Norbert Wiener
>> > >>>
>> > >>> https://www.cse.buffalo.edu/~knepley/
>> > >>> <http://www.cse.buffalo.edu/~knepley/>
>> > >>>
>> > >>
>> >
>>
>>

-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener

https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20200713/47997694/attachment.html>