[petsc-dev] pipeline failure

[Mark Adams]

I'm not seeing Matt's allusion ... should I put this in ts/utils and
petscts.h?

On Mon, Jul 13, 2020 at 4:32 PM Satish Balay <balay at mcs.anl.gov> wrote:

> At Matt alluded to - its a circular dependency - hence the error.
>
> i.e DMPlexSNESComputeJacobianFEM() is a SNES function - so it can't be
> called from DM sources [src/dm/impls/plex/landau/plexland.c]
>
> The dependency order is:
>
> -lpetsctao -lpetscts -lpetscsnes -lpetscksp -lpetscdm -lpetscmat
> -lpetscvec -lpetscsys
>
> Satish
>
> On Mon, 13 Jul 2020, Mark Adams wrote:
>
> > I did add #include <petscts.h> to petscdmplex.h. THat is all that I can
> see
> > that could cause trouble.
> >
> > On Mon, Jul 13, 2020 at 4:11 PM Mark Adams <mfadams at lbl.gov> wrote:
> >
> > > THis error was in this one also, plus warnings:
> > >
> > > https://gitlab.com/petsc/petsc/-/jobs/636537354
> > >
> > >
> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h",
> > > line 21: warning: operands have incompatible types:
> > > struct  {pointer to long long perm, pointer to long long invPerm} ":"
> > > const struct  {pointer to long long perm, pointer to long long invPerm}
> > >
> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/sectionimpl.h",
> > > line 21: warning: operands have incompatible types:
> > > struct  {pointer to long long perm, pointer to long long invPerm} ":"
> > > const struct  {pointer to long long perm, pointer to long long invPerm}
> > >
> "/export/home/glci/builds/zxfiRCGf/0/petsc/petsc/include/petsc/private/petscfeimpl.h",
> > > line 19: warning: linker scope was specified more than once:
> "PETSCFE_SetUp"
> > >
> > > On Mon, Jul 13, 2020 at 4:08 PM Mark Adams <mfadams at lbl.gov> wrote:
> > >
> > >>
> > >> On Mon, Jul 13, 2020 at 4:01 PM Matthew Knepley <knepley at gmail.com>
> > >> wrote:
> > >>
> > >>> Do these have -single-library ?
> > >>>
> > >>
> > >> This was in a single configuration, but it also happened in this one:
> > >>
> > >>
> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so:
> > >> undefined reference to `TSGetDM'
> > >>
> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/arch-ci-linux-pkgs-cxx-mlib/lib/libpetscdm.so:
> > >> undefined reference to `DMPlexSNESComputeJacobianFEM'
> > >> collect2: error: ld returned 1 exit status
> > >> gmakefile.test:185: recipe for target
> > >> 'arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96' failed
> > >> make[2]: *** [arch-ci-linux-pkgs-cxx-mlib/tests/mat/tests/ex96] Error
> 1
> > >> make[2]: *** Waiting for unfinished jobs....
> > >>
> /scratch/svcpetsc/glci-builds/qanz_veh/0/petsc/petsc/lib/petsc/conf/test.common:26:
> > >> recipe for target 'allgtest-tap' failed
> > >> make[1]: *** [allgtest-tap] Error 2
> > >> GNUmakefile:17: recipe for target 'allgtests-tap' failed
> > >> make: *** [allgtests-tap] Error 2
> > >> Running after_script
> > >>
> > >>
> > >>>
> > >>>   Thanks,
> > >>>
> > >>>      Matt
> > >>>
> > >>> On Mon, Jul 13, 2020 at 3:51 PM Mark Adams <mfadams at lbl.gov> wrote:
> > >>>
> > >>>> I am getting this error on two pipeline tests. They don't seem to
> have
> > >>>> anything to do with my branch. I have gotten these several times
> today.
> > >>>>
> > >>>>
> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so:
> > >>>> undefined reference to `DMPlexSNESComputeJacobianFEM'
> > >>>>
> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/arch-ci-linux-cuda-single-cxx/lib/libpetscdm.so:
> > >>>> undefined reference to `TSGetDM'
> > >>>> collect2: error: ld returned 1 exit status
> > >>>> make[2]: *** [arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240]
> > >>>> Error 1
> > >>>> make[2]: *** Waiting for unfinished jobs....
> > >>>> gmakefile.test:185: recipe for target
> > >>>> 'arch-ci-linux-cuda-single-cxx/tests/mat/tests/ex240' failed
> > >>>> make[1]: *** [allgtest-tap] Error 2
> > >>>>
> /home/petsc/builds/KFnbdjNX/0/petsc/petsc/lib/petsc/conf/test.common:26:
> > >>>> recipe for target 'allgtest-tap' failed
> > >>>> GNUmakefile:17: recipe for target 'allgtests-tap' failed
> > >>>> make: *** [allgtests-tap] Error 2
> > >>>>
> > >>>
> > >>>
> > >>> --
> > >>> What most experimenters take for granted before they begin their
> > >>> experiments is infinitely more interesting than any results to which
> their
> > >>> experiments lead.
> > >>> -- Norbert Wiener
> > >>>
> > >>> https://www.cse.buffalo.edu/~knepley/
> > >>> <http://www.cse.buffalo.edu/~knepley/>
> > >>>
> > >>
> >
>
>
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