[petsc-dev] testing on Titan

[Mark Adams]

I am trying to run on Titan and I am having problems running the tests. I
get this output. It says it can not find a directory, but I do an ls in
after the error and you can see that it is there.

I've attached the logs.

Any ideas?
Thanks,
Mark

adams at titan-login6:~/petsc> make
PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi PETSC_ARCH="" test
Running test examples to verify correct installation
Using PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi and PETSC_ARCH=
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/ccs/home/adams/petsc/src/snes/examples/tutorials ex19
*********************************************************************************
cc -o ex19.o -c -fast -mp   -I/ccs/proj/env003/petscv3.9-opt64-pgi/include
-I/ccs/proj/env003/petscv3.9-opt64-pgi/include
-I/ccs/proj/env003/petscv3.9-opt64-pgi/include    `pwd`/ex19.c
cc -fast -mp  -o ex19  ex19.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib
-Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib
-L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack
-lfblas -lparmetis -lmetis -lstdc++ -ldl
/ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(dlimpl.o): In function
`PetscDLOpen':
/autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:53: warning: Using
'dlopen' in statically linked applications requires at runtime the shared
libraries from the glibc version used for linking
/ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(send.o): In function
`PetscOpenSocket':
/autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:101:
warning: Using 'gethostbyname' in statically linked applications requires
at runtime the shared libraries from the glibc version used for linking
/bin/rm -f ex19.o
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
process
See http://www.mcs.anl.gov/petsc/documentation/faq.html
[NID 18525] 2018-06-28 18:25:39 Exec ./ex19 failed: chdir
/autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such
file or directory
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI
processes
See http://www.mcs.anl.gov/petsc/documentation/faq.html
[NID 18525] 2018-06-28 18:25:46 Exec ./ex19 failed: chdir
/autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such
file or directory
1,5c1
< lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
<   0 SNES Function norm 0.0406612
<   1 SNES Function norm 4.12227e-06
<   2 SNES Function norm 6.098e-11
< Number of SNES iterations = 2
---
> [NID 18525] 2018-06-28 18:25:55 Exec ./ex19 failed: chdir
/autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such
file or directory
/ccs/home/adams/petsc/src/snes/examples/tutorials
Possible problem with ex19_hypre, diffs above
=========================================
*******************Error detected during compile or link!*******************
See http://www.mcs.anl.gov/petsc/documentation/faq.html
/ccs/home/adams/petsc/src/snes/examples/tutorials ex5f
*********************************************************
ftn -c -fast  -mp   -I/ccs/proj/env003/petscv3.9-opt64-pgi/include
-I/ccs/proj/env003/petscv3.9-opt64-pgi/include
-I/ccs/proj/env003/petscv3.9-opt64-pgi/include    -o ex5f.o ex5f.F90
PGF90-S-0155-Could not resolve generic procedure dmdacreate2d (ex5f.F90:
120)
PGF90-S-0450-Argument number 2 to snesgetiterationnumber: kind mismatch
(ex5f.F90: 180)
  0 inform,   0 warnings,   2 severes, 0 fatal for main
PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal
(ex5f.F90: 464)
PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal
(ex5f.F90: 477)
  0 inform,   0 warnings,   2 severes, 0 fatal for formjacobianlocal
gmake[3]: [ex5f.o] Error 2 (ignored)
ftn -fast  -mp  -o ex5f ex5f.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib
-Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib
-L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack
-lfblas -lparmetis -lmetis -lstdc++ -ldl
/usr/bin/ld: cannot find ex5f.o: No such file or directory
/usr/bin/sha1sum: ex5f: No such file or directory
gmake[3]: [ex5f] Error 2 (ignored)
/bin/rm -f ex5f.o
Completed test examples
adams at titan-login6:~/petsc> ll
/autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials
total 1864
-rw-rw-r-- 1 adams adams  11134 May  3 14:26 ex1.c
drwxr-xr-x 3 adams adams   4096 May  3 14:26 ex10d
-rw-rw-r-- 1 adams adams  92615 May  3 14:26 ex12.c
-rw-r--r-- 1 adams adams  19324 Jun 21 17:59 ex13.c
-rw-rw-r-- 1 adams adams  20550 May  3 14:26 ex14.c
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