[petsc-dev] testing on Titan

Thu Jun 28 18:53:35 CDT 2018

  1) We need to get this PGI compiler into our regular testing. It doesn't like some Fortran code the other compilers are ok with

   2) Mark,  likely you just need to submit the examples manually to run them. cd src/snes/examples/tutorials; make ex19  then use the batch system to submit the example 

   Barry

> On Jun 28, 2018, at 5:35 PM, Mark Adams <mfadams at lbl.gov> wrote:
> 
> I am trying to run on Titan and I am having problems running the tests. I get this output. It says it can not find a directory, but I do an ls in after the error and you can see that it is there.
> 
> I've attached the logs.
> 
> Any ideas?
> Thanks,
> Mark
> 
> adams at titan-login6:~/petsc> make PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi PETSC_ARCH="" test
> Running test examples to verify correct installation
> Using PETSC_DIR=/ccs/proj/env003/petscv3.9-opt64-pgi and PETSC_ARCH=
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /ccs/home/adams/petsc/src/snes/examples/tutorials ex19
> *********************************************************************************
> cc -o ex19.o -c -fast -mp   -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -I/ccs/proj/env003/petscv3.9-opt64-pgi/include    `pwd`/ex19.c
> cc -fast -mp  -o ex19  ex19.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack -lfblas -lparmetis -lmetis -lstdc++ -ldl
> /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(dlimpl.o): In function `PetscDLOpen':
> /autofs/nccs-svm1_home1/adams/petsc/src/sys/dll/dlimpl.c:53: warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
> /ccs/proj/env003/petscv3.9-opt64-pgi/lib/libpetsc.a(send.o): In function `PetscOpenSocket':
> /autofs/nccs-svm1_home1/adams/petsc/src/sys/classes/viewer/impls/socket/send.c:101: warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
> /bin/rm -f ex19.o
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI process
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> [NID 18525] 2018-06-28 18:25:39 Exec ./ex19 failed: chdir /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such file or directory
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI processes
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> [NID 18525] 2018-06-28 18:25:46 Exec ./ex19 failed: chdir /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such file or directory
> 1,5c1
> < lid velocity = 0.0016, prandtl # = 1., grashof # = 1.
> <   0 SNES Function norm 0.0406612 
> <   1 SNES Function norm 4.12227e-06 
> <   2 SNES Function norm 6.098e-11 
> < Number of SNES iterations = 2
> ---
> > [NID 18525] 2018-06-28 18:25:55 Exec ./ex19 failed: chdir /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials No such file or directory
> /ccs/home/adams/petsc/src/snes/examples/tutorials
> Possible problem with ex19_hypre, diffs above
> =========================================
> *******************Error detected during compile or link!*******************
> See http://www.mcs.anl.gov/petsc/documentation/faq.html
> /ccs/home/adams/petsc/src/snes/examples/tutorials ex5f
> *********************************************************
> ftn -c -fast  -mp   -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -I/ccs/proj/env003/petscv3.9-opt64-pgi/include -I/ccs/proj/env003/petscv3.9-opt64-pgi/include    -o ex5f.o ex5f.F90
> PGF90-S-0155-Could not resolve generic procedure dmdacreate2d (ex5f.F90: 120)
> PGF90-S-0450-Argument number 2 to snesgetiterationnumber: kind mismatch (ex5f.F90: 180)
>   0 inform,   0 warnings,   2 severes, 0 fatal for main
> PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal (ex5f.F90: 464)
> PGF90-S-0155-Could not resolve generic procedure matsetvalueslocal (ex5f.F90: 477)
>   0 inform,   0 warnings,   2 severes, 0 fatal for formjacobianlocal
> gmake[3]: [ex5f.o] Error 2 (ignored)
> ftn -fast  -mp  -o ex5f ex5f.o -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -Wl,-rpath,/ccs/proj/env003/petscv3.9-opt64-pgi/lib -L/ccs/proj/env003/petscv3.9-opt64-pgi/lib -lpetsc -lHYPRE -lflapack -lfblas -lparmetis -lmetis -lstdc++ -ldl
> /usr/bin/ld: cannot find ex5f.o: No such file or directory
> /usr/bin/sha1sum: ex5f: No such file or directory
> gmake[3]: [ex5f] Error 2 (ignored)
> /bin/rm -f ex5f.o
> Completed test examples
> adams at titan-login6:~/petsc> ll /autofs/nccs-svm1_home1/adams/petsc/src/snes/examples/tutorials
> total 1864
> -rw-rw-r-- 1 adams adams  11134 May  3 14:26 ex1.c
> drwxr-xr-x 3 adams adams   4096 May  3 14:26 ex10d
> -rw-rw-r-- 1 adams adams  92615 May  3 14:26 ex12.c
> -rw-r--r-- 1 adams adams  19324 Jun 21 17:59 ex13.c
> -rw-rw-r-- 1 adams adams  20550 May  3 14:26 ex14.c
> 
> <make.log><configure.log>