[petsc-dev] snes/ex56 regression
Jed Brown
jed at jedbrown.org
Tue Jul 3 17:26:32 CDT 2018
"Smith, Barry F." <bsmith at mcs.anl.gov> writes:
> Runs fine in the master branch; do you really need it to work in maint.
Uh, many users work with releases. If this is a "regression" it implies
that it worked at some point in the past. In that case, we should fix
it in 'maint' even if some new feature in 'master' has also fixed it.
Note that Mark's prompt says he's on 'master', not 'maint'.
> Barry
>
>
>> On Jul 3, 2018, at 6:39 AM, Mark Adams <mfadams at lbl.gov> wrote:
>>
>> SNES ex56 seems to have regressed:
>>
>> 04:35 nid02516 master *= ~/petsc_install/petsc/src/snes/examples/tutorials$ make PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp PETSC_ARCH="" runex56
>> srun -n 1 ./ex56 -cells 2,2,1 -max_conv_its 3 -petscspace_order 2 -snes_max_it 2 -ksp_max_it 100 -ksp_type cg -ksp_rtol 1.e-11 -ksp_norm_type unpreconditioned -snes_rtol 1.e-10 -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -pc_gamg_coarse_eq_limit 1000 -pc_gamg_reuse_interpolation true -pc_gamg_square_graph 1 -pc_gamg_threshold 0.05 -pc_gamg_threshold_scale .0 -ksp_converged_reason -snes_monitor_short -ksp_monitor_short -snes_converged_reason -use_mat_nearnullspace true -mg_levels_ksp_max_it 1 -mg_levels_ksp_type chebyshev -mg_levels_esteig_ksp_type cg -mg_levels_esteig_ksp_max_it 10 -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05 -mg_levels_pc_type jacobi -petscpartitioner_type simple -mat_block_size 3 -matptap_via scalable -ex56_dm_view -run_type 1
>> OMP: Warning #239: KMP_AFFINITY: granularity=fine will be used.
>> [0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
>> [0]PETSC ERROR: Object is in wrong state
>> [0]PETSC ERROR: Not for unassembled matrix
>> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
>> [0]PETSC ERROR: Petsc Development GIT revision: v3.9.2-825-g3a11c7608d GIT Date: 2018-07-01 06:15:09 +0200
>> [0]PETSC ERROR: /global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex56 on a named nid02516 by madams Tue Jul 3 04:35:52 2018
>> [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-int64_t=1 --known-mpi-c-double-complex=1 --known-mklspblas-supports-zero-based=0 --known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn COPTFLAGS=" -g -O0 -mkl -static-intel" CXXOPTFLAGS="-g -O0 -mkl -static-intel" FOPTFLAGS=" -g -O0 -mkl -static-intel" --download-metis=1 --with-hypre-dir=/global/homes/m/madams/tmp/hypre32-2.14.0 --download-parmetis=1 LIBS="-L/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" --with-blaslapack-include=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/include --with-debugging=1 --with-mpiexec=srun --with-batch=1 --known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0 --with-64-bit-indices=0 PETSC_ARCH=arch-cori-knl-opt-intel-omp --with-openmp=1 --download-p4est=0 --with-x=0 --prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp PETSC_DIR=/global/homes/m/madams/petsc_install/petsc
>> [0]PETSC ERROR: #1 MatConvert() line 4066 in /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matrix.c
>> [0]PETSC ERROR: #2 MatSetType() line 67 in /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c
>> [0]PETSC ERROR: #3 MatSetFromOptions() line 229 in /global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c
>> [0]PETSC ERROR: #4 DMCreateMatrix_Plex() line 1137 in /global/u2/m/madams/petsc_install/petsc/src/dm/impls/plex/plex.c
>> [0]PETSC ERROR: #5 DMCreateMatrix() line 1266 in /global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c
>> [0]PETSC ERROR: #6 main() line 428 in /global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex56.c
>> [0]PETSC ERROR: PETSc Option Table entries:
>> [0]PETSC ERROR: -cells 2,2,1
>> [0]PETSC ERROR: -ex56_dm_refine 0
>> [0]PETSC ERROR: -ex56_dm_view
>> [0]PETSC ERROR: -ksp_converged_reason
>> [0]PETSC ERROR: -ksp_max_it 100
>> [0]PETSC ERROR: -ksp_monitor_short
>> [0]PETSC ERROR: -ksp_norm_type unpreconditioned
>> [0]PETSC ERROR: -ksp_rtol 1.e-11
>> [0]PETSC ERROR: -ksp_type cg
>> [0]PETSC ERROR: -mat_block_size 3
>> [0]PETSC ERROR: -mat_type aijmkl
>> [0]PETSC ERROR: -matptap_via scalable
>> [0]PETSC ERROR: -max_conv_its 3
>> [0]PETSC ERROR: -mg_levels_esteig_ksp_max_it 10
>> [0]PETSC ERROR: -mg_levels_esteig_ksp_type cg
>> [0]PETSC ERROR: -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05
>> [0]PETSC ERROR: -mg_levels_ksp_max_it 1
>> [0]PETSC ERROR: -mg_levels_ksp_type chebyshev
>> [0]PETSC ERROR: -mg_levels_pc_type jacobi
>> [0]PETSC ERROR: -pc_gamg_agg_nsmooths 1
>> [0]PETSC ERROR: -pc_gamg_coarse_eq_limit 1000
>> [0]PETSC ERROR: -pc_gamg_reuse_interpolation true
>> [0]PETSC ERROR: -pc_gamg_square_graph 1
>>
More information about the petsc-dev
mailing list