[petsc-dev] snes/ex56 regression
Smith, Barry F.
bsmith at mcs.anl.gov
Tue Jul 3 15:45:10 CDT 2018
Runs fine in the master branch; do you really need it to work in maint.
Barry
> On Jul 3, 2018, at 6:39 AM, Mark Adams <mfadams at lbl.gov> wrote:
>
> SNES ex56 seems to have regressed:
>
> 04:35 nid02516 master *= ~/petsc_install/petsc/src/snes/examples/tutorials$ make PETSC_DIR=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp PETSC_ARCH="" runex56
> srun -n 1 ./ex56 -cells 2,2,1 -max_conv_its 3 -petscspace_order 2 -snes_max_it 2 -ksp_max_it 100 -ksp_type cg -ksp_rtol 1.e-11 -ksp_norm_type unpreconditioned -snes_rtol 1.e-10 -pc_type gamg -pc_gamg_type agg -pc_gamg_agg_nsmooths 1 -pc_gamg_coarse_eq_limit 1000 -pc_gamg_reuse_interpolation true -pc_gamg_square_graph 1 -pc_gamg_threshold 0.05 -pc_gamg_threshold_scale .0 -ksp_converged_reason -snes_monitor_short -ksp_monitor_short -snes_converged_reason -use_mat_nearnullspace true -mg_levels_ksp_max_it 1 -mg_levels_ksp_type chebyshev -mg_levels_esteig_ksp_type cg -mg_levels_esteig_ksp_max_it 10 -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05 -mg_levels_pc_type jacobi -petscpartitioner_type simple -mat_block_size 3 -matptap_via scalable -ex56_dm_view -run_type 1
> OMP: Warning #239: KMP_AFFINITY: granularity=fine will be used.
> [0]PETSC ERROR: --------------------- Error Message --------------------------------------------------------------
> [0]PETSC ERROR: Object is in wrong state
> [0]PETSC ERROR: Not for unassembled matrix
> [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting.
> [0]PETSC ERROR: Petsc Development GIT revision: v3.9.2-825-g3a11c7608d GIT Date: 2018-07-01 06:15:09 +0200
> [0]PETSC ERROR: /global/u2/m/madams/petsc_install/petsc/src/snes/examples/tutorials/./ex56 on a named nid02516 by madams Tue Jul 3 04:35:52 2018
> [0]PETSC ERROR: Configure options --known-level1-dcache-size=32768 --known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8 --known-sizeof-char=1 --known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4 --known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8 --known-memcmp-ok=1 --known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4 --known-mpi-long-double=1 --known-mpi-int64_t=1 --known-mpi-c-double-complex=1 --known-mklspblas-supports-zero-based=0 --known-has-attribute-aligned=1 --with-cc=cc --with-cxx=CC --with-fc=ftn COPTFLAGS=" -g -O0 -mkl -static-intel" CXXOPTFLAGS="-g -O0 -mkl -static-intel" FOPTFLAGS=" -g -O0 -mkl -static-intel" --download-metis=1 --with-hypre-dir=/global/homes/m/madams/tmp/hypre32-2.14.0 --download-parmetis=1 LIBS="-L/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread" --with-blaslapack-include=/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/include --with-debugging=1 --with-mpiexec=srun --with-batch=1 --known-mpi-shared-libraries=1 --known-64-bit-blas-indices=0 --with-64-bit-indices=0 PETSC_ARCH=arch-cori-knl-opt-intel-omp --with-openmp=1 --download-p4est=0 --with-x=0 --prefix=/global/homes/m/madams/petsc_install/petsc-cori-knl-opt-intel-omp PETSC_DIR=/global/homes/m/madams/petsc_install/petsc
> [0]PETSC ERROR: #1 MatConvert() line 4066 in /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matrix.c
> [0]PETSC ERROR: #2 MatSetType() line 67 in /global/u2/m/madams/petsc_install/petsc/src/mat/interface/matreg.c
> [0]PETSC ERROR: #3 MatSetFromOptions() line 229 in /global/u2/m/madams/petsc_install/petsc/src/mat/utils/gcreate.c
> [0]PETSC ERROR: #4 DMCreateMatrix_Plex() line 1137 in /global/u2/m/madams/petsc_install/petsc/src/dm/impls/plex/plex.c
> [0]PETSC ERROR: #5 DMCreateMatrix() line 1266 in /global/u2/m/madams/petsc_install/petsc/src/dm/interface/dm.c
> [0]PETSC ERROR: #6 main() line 428 in /global/homes/m/madams/petsc_install/petsc/src/snes/examples/tutorials/ex56.c
> [0]PETSC ERROR: PETSc Option Table entries:
> [0]PETSC ERROR: -cells 2,2,1
> [0]PETSC ERROR: -ex56_dm_refine 0
> [0]PETSC ERROR: -ex56_dm_view
> [0]PETSC ERROR: -ksp_converged_reason
> [0]PETSC ERROR: -ksp_max_it 100
> [0]PETSC ERROR: -ksp_monitor_short
> [0]PETSC ERROR: -ksp_norm_type unpreconditioned
> [0]PETSC ERROR: -ksp_rtol 1.e-11
> [0]PETSC ERROR: -ksp_type cg
> [0]PETSC ERROR: -mat_block_size 3
> [0]PETSC ERROR: -mat_type aijmkl
> [0]PETSC ERROR: -matptap_via scalable
> [0]PETSC ERROR: -max_conv_its 3
> [0]PETSC ERROR: -mg_levels_esteig_ksp_max_it 10
> [0]PETSC ERROR: -mg_levels_esteig_ksp_type cg
> [0]PETSC ERROR: -mg_levels_ksp_chebyshev_esteig 0,0.05,0,1.05
> [0]PETSC ERROR: -mg_levels_ksp_max_it 1
> [0]PETSC ERROR: -mg_levels_ksp_type chebyshev
> [0]PETSC ERROR: -mg_levels_pc_type jacobi
> [0]PETSC ERROR: -pc_gamg_agg_nsmooths 1
> [0]PETSC ERROR: -pc_gamg_coarse_eq_limit 1000
> [0]PETSC ERROR: -pc_gamg_reuse_interpolation true
> [0]PETSC ERROR: -pc_gamg_square_graph 1
>
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