[petsc-dev] download problem p4est on Cori at NERSC

[Zhang, Hong]

Yes, I do it for KNL. But I just noticed that your problem is caused by p4est. I have not tried p4est. Sorry for not being helpful.

Hong (Mr.)

On Feb 16, 2017, at 5:32 PM, Mark Adams <mfadams at lbl.gov<mailto:mfadams at lbl.gov>> wrote:

Hong, do you do this for KNL?  -C knl

On Thu, Feb 16, 2017 at 6:29 PM, Mark Adams <mfadams at lbl.gov<mailto:mfadams at lbl.gov>> wrote:


On Thu, Feb 16, 2017 at 4:49 PM, Zhang, Hong <hongzhang at anl.gov<mailto:hongzhang at anl.gov>> wrote:
On cori, I tried to compile PETSc on a compute node in the interactive mode, but it did not work. What worked for me is to do the following:

1. configure with --with-batch=1 to generate a binary
2. submit the binary to the queue: srun -n 1 -c 1 ./conftest-xxx
3. run the reconfigure-xxx script after the submitted job is done

Humm, I tried this, 1 and 3 on the login node and 2 on a compute node, and I seem to get the same error. And I nuked the arch directory before I started.


Hong (Mr.)

On Feb 15, 2017, at 3:38 PM, Mark Adams <mfadams at lbl.gov<mailto:mfadams at lbl.gov>> wrote:

Oh, this is because git does not work on KNL. Maybe I should do with-batch=1,


On Wed, Feb 15, 2017 at 4:36 PM, Mark Adams <mfadams at lbl.gov<mailto:mfadams at lbl.gov>> wrote:
I get this error on the KNL partition at NERSC.  P4est works on the Haswell partition and other downloads seem to work on the KNL partition. Any ideas?





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