[petsc-dev] petsc-dev installation error on Edison

Matthew Knepley knepley at gmail.com
Fri Aug 1 16:13:24 CDT 2014


On Fri, Aug 1, 2014 at 4:06 PM, Gautam Bisht <gbisht at lbl.gov> wrote:

> Hi,
>
> I'm getting an error while trying to install petsc-dev on Edison with GUN
> compilers. Attached below is configure.log and additional command line
> outputs.
>

Satish fixed this. Did you pull?

  Thanks,

    Matt


>
> > module list -t
> Currently Loaded Modulefiles:
> modules/3.2.6.7
> nsg/1.2.0
> eswrap/1.1.0-1.020200.1130.0
> switch/1.0-1.0502.51632.2.84.ari
> craype-network-aries
> craype/2.1.2
> craype-ivybridge
> cray-shmem/7.0.0
> cray-mpich/7.0.0
> torque/4.2.7
> moab/7.2.7-e7c070d1-b3-SUSE11
> altd/1.0
> darshan/2.3.0
> usg-default-modules/1.1
> gcc/4.9.0
> cray-libsci/13.0.0
> udreg/2.3.2-1.0502.8763.1.11.ari
> ugni/5.0-1.0502.9037.7.26.ari
> pmi/5.0.4-1.0000.10161.132.4.ari
> dmapp/7.0.1-1.0502.9080.9.32.ari
> gni-headers/3.0-1.0502.9038.7.4.ari
> xpmem/0.1-2.0502.51169.1.11.ari
> job/1.5.5-0.1_2.0502.52111.3.39.ari
> csa/3.0.0-1_2.0502.51200.1.108.ari
> alps/5.2.1-2.0502.8712.10.32.ari
> rca/1.0.0-2.0502.51491.3.92.ari
> atp/1.7.3
> PrgEnv-gnu/5.2.25
> cmake/2.8.11.2
> cray-hdf5-parallel/1.8.13
> mercurial/2.7.1
>
> >git clone https://bitbucket.org/petsc/petsc petsc.0c8c14c5
> cd petsc.0c8c14c5
> git checkout 0c8c14c5
>
>
> >cat config/configure-edison-gnu-4.9.0-debug.py
> #!/usr/bin/env python
> if __name__ == '__main__':
>   import sys
>   import os
>   sys.path.insert(0, os.path.abspath('config'))
>   import configure
>   configure_options = [
>      '--with-cc=cc',
>      '--with-cxx=CC',
>      '--with-fc=ftn',
>      '--with-ld=cc',
>      '--with-cpp=cpp',
>      '--with-shared-libraries=0',
>      '--with-gnu-compilers=0',
>      '--with-debugging=0',
>      '--with-clanguage=c',
>      '--with-x=0',
>      '--with-clib-autodetect=0',
>      '--with-fortranlib-autodetect=0',
>      '--with-cxxlib-autodetect=0',
>      '--COPTFLAGS="-O3 -msse3 -fPIC"',
>      '--FOPTFLAGS="-O3 -msse3 -fPIC"',
>      '--download-parmetis=1',
>      '--download-metis=1',
>      '--with-hdf5=1',
>      '--with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.13/GNU/49',
>      '--with-mpi-dir=/opt/cray/mpt/7.0.0/gni/mpich2-gnu/49',
>      '--with-c2html=0',
>      '--PETSC_ARCH=edison-gnu-4.9.0-debug',
>   ]
>   configure.petsc_configure(configure_options)
>
>  Any ideas what is wrong?
>
> Thanks
> -Gautam.
>
>


-- 
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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