[petsc-dev] petsc-dev installation error on Edison

Gautam Bisht gbisht at lbl.gov
Fri Aug 1 16:06:25 CDT 2014


Hi,

I'm getting an error while trying to install petsc-dev on Edison with GUN
compilers. Attached below is configure.log and additional command line
outputs.


> module list -t
Currently Loaded Modulefiles:
modules/3.2.6.7
nsg/1.2.0
eswrap/1.1.0-1.020200.1130.0
switch/1.0-1.0502.51632.2.84.ari
craype-network-aries
craype/2.1.2
craype-ivybridge
cray-shmem/7.0.0
cray-mpich/7.0.0
torque/4.2.7
moab/7.2.7-e7c070d1-b3-SUSE11
altd/1.0
darshan/2.3.0
usg-default-modules/1.1
gcc/4.9.0
cray-libsci/13.0.0
udreg/2.3.2-1.0502.8763.1.11.ari
ugni/5.0-1.0502.9037.7.26.ari
pmi/5.0.4-1.0000.10161.132.4.ari
dmapp/7.0.1-1.0502.9080.9.32.ari
gni-headers/3.0-1.0502.9038.7.4.ari
xpmem/0.1-2.0502.51169.1.11.ari
job/1.5.5-0.1_2.0502.52111.3.39.ari
csa/3.0.0-1_2.0502.51200.1.108.ari
alps/5.2.1-2.0502.8712.10.32.ari
rca/1.0.0-2.0502.51491.3.92.ari
atp/1.7.3
PrgEnv-gnu/5.2.25
cmake/2.8.11.2
cray-hdf5-parallel/1.8.13
mercurial/2.7.1

>git clone https://bitbucket.org/petsc/petsc petsc.0c8c14c5
cd petsc.0c8c14c5
git checkout 0c8c14c5


>cat config/configure-edison-gnu-4.9.0-debug.py
#!/usr/bin/env python
if __name__ == '__main__':
  import sys
  import os
  sys.path.insert(0, os.path.abspath('config'))
  import configure
  configure_options = [
     '--with-cc=cc',
     '--with-cxx=CC',
     '--with-fc=ftn',
     '--with-ld=cc',
     '--with-cpp=cpp',
     '--with-shared-libraries=0',
     '--with-gnu-compilers=0',
     '--with-debugging=0',
     '--with-clanguage=c',
     '--with-x=0',
     '--with-clib-autodetect=0',
     '--with-fortranlib-autodetect=0',
     '--with-cxxlib-autodetect=0',
     '--COPTFLAGS="-O3 -msse3 -fPIC"',
     '--FOPTFLAGS="-O3 -msse3 -fPIC"',
     '--download-parmetis=1',
     '--download-metis=1',
     '--with-hdf5=1',
     '--with-hdf5-dir=/opt/cray/hdf5-parallel/1.8.13/GNU/49',
     '--with-mpi-dir=/opt/cray/mpt/7.0.0/gni/mpich2-gnu/49',
     '--with-c2html=0',
     '--PETSC_ARCH=edison-gnu-4.9.0-debug',
  ]
  configure.petsc_configure(configure_options)

 Any ideas what is wrong?

Thanks
-Gautam.
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