[petsc-dev] metis config error on XT4

[Jack Poulson]

I have actually run into a similar problem with ParMetis. I fixed it on my
end by changing the ParMetis CMakeLists.txt lines

set(GKLIB_PATH METIS/GKlib CACHE PATH "path to GKlib")
set(METIS_PATH METIS CACHE PATH "path to METIS")

to

set(GKLIB_PATH ${CMAKE_CURRENT_SOURCE_DIR}/metis/GKlib CACHE PATH "path to
GKlib
")
set(METIS_PATH ${CMAKE_CURRENT_SOURCE_DIR}/metis CACHE PATH "path to METIS")

Your mileage may vary.

Jack

On Wed, Nov 30, 2011 at 4:32 PM, Aron Ahmadia <aron.ahmadia at kaust.edu.sa>wrote:

> Mark,
>
> Sorry, no help here, except that cmake is pretty easy to install from
> source, so that might be my recommendation if you don't want to wait for
> help from their systems team.
>
> A
>
> On Thu, Dec 1, 2011 at 1:30 AM, Mark F. Adams <mark.adams at columbia.edu>wrote:
>
>> Thanks Tim, I do use gcc. And this is on Franklin at NERSC.
>>
>> Cmake is just kicking my ass, now I get (appended).
>>
>> I do have an old version of cmake here:
>>
>> madams/petsc-dev> which cmake
>> /usr/common/usg/cmake/2.8.3/bin/cmake
>>
>> any ideas?
>> Mark
>>
>> ===============================================================================
>>                                           Configuring METIS; this may take
>> several minutes
>>  ===============================================================================
>>
>>
>> *******************************************************************************
>>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>> details):
>>
>> -------------------------------------------------------------------------------
>> Error running configure on METIS: Could not execute "cd
>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make
>> distclean && make config
>> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc"
>> doubleprecision=1":
>> rm -rf build/Linux-x86_64
>> rm -rf build/Linux-x86_64
>> mkdir -p build/Linux-x86_64
>> cd build/Linux-x86_64 && cmake
>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2
>> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=
>> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt
>> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
>> -- The C compiler identification is GNU
>> -- The CXX compiler identification is GNU
>> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc
>> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc -- works
>> -- Detecting C compiler ABI info
>> -- Detecting C compiler ABI info - done
>> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++
>> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works
>> -- Detecting CXX compiler ABI info
>> -- Detecting CXX compiler ABI info - done
>> -- Configuring incomplete, errors occurred!
>> CMake Error at CMakeLists.txt:21 (include):
>>   include could not find load file:
>>
>>     /GKlibSystem.cmake
>>
>>
>> make: *** [config] Error 1
>>
>>
>>
>> On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote:
>>
>> Without knowing how your system is configured, this may not help. But on
>> the Cray systems we use (they have the modules package installed), if we
>> are using a compiler other than GNU (Intel, PGI, etc) but we want to use
>> cmake, we still have to load the gcc module (not the programming
>> environment, just the module).
>>
>> On our machines, it means we may load the PrgEnv-Intel module (so cc
>> points to icc, ftn points to ifort, etc) but we also have to load
>> gcc/<version> to get cmake to work.
>>
>> Tim
>>
>> ------------------------------
>> *From: *"Aron Ahmadia" <aron.ahmadia at kaust.edu.sa>
>> *To: *"For users of the development version of PETSc" <
>> petsc-dev at mcs.anl.gov>
>> *Sent: *Wednesday, November 30, 2011 3:49:25 PM
>> *Subject: *Re: [petsc-dev] metis config error on XT4
>>
>> looks like a broken cmake...
>>
>> What happens when you just run: cmake by itself?
>>
>> A
>>
>> On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams <mark.adams at columbia.edu>
>>  wrote:
>>
>>> I'm getting this error on Franklin at NERSC:
>>>
>>>
>>> *******************************************************************************
>>>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>>> details):
>>>
>>> -------------------------------------------------------------------------------
>>> Error running configure on METIS: Could not execute "cd
>>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make
>>> distclean && make config
>>> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc"
>>> doubleprecision=1":
>>> rm -rf build/Linux-x86_64
>>> rm -rf build/Linux-x86_64
>>> mkdir -p build/Linux-x86_64
>>> cd build/Linux-x86_64 && cmake
>>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2
>>> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=
>>> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt
>>> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
>>> cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version
>>> `GLIBCXX_3.4.15' not found (required by cmake)
>>> make: *** [config] Error 1
>>>
>>> *******************************************************************************
>>>
>>> any ideas?
>>>
>>> Mark
>>>
>>
>>
>>
>>
>>
>>
>
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