[petsc-dev] metis config error on XT4

[Aron Ahmadia]

Mark,

Sorry, no help here, except that cmake is pretty easy to install from
source, so that might be my recommendation if you don't want to wait for
help from their systems team.

A

On Thu, Dec 1, 2011 at 1:30 AM, Mark F. Adams <mark.adams at columbia.edu>wrote:

> Thanks Tim, I do use gcc. And this is on Franklin at NERSC.
>
> Cmake is just kicking my ass, now I get (appended).
>
> I do have an old version of cmake here:
>
> madams/petsc-dev> which cmake
> /usr/common/usg/cmake/2.8.3/bin/cmake
>
> any ideas?
> Mark
>
> ===============================================================================
>                                           Configuring METIS; this may take
> several minutes
>  ===============================================================================
>
>
> *******************************************************************************
>          UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
> details):
>
> -------------------------------------------------------------------------------
> Error running configure on METIS: Could not execute "cd
> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make
> distclean && make config
> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc"
> doubleprecision=1":
> rm -rf build/Linux-x86_64
> rm -rf build/Linux-x86_64
> mkdir -p build/Linux-x86_64
> cd build/Linux-x86_64 && cmake
> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2
> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=
> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt
> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
> -- The C compiler identification is GNU
> -- The CXX compiler identification is GNU
> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc
> -- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc -- works
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++
> -- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Configuring incomplete, errors occurred!
> CMake Error at CMakeLists.txt:21 (include):
>   include could not find load file:
>
>     /GKlibSystem.cmake
>
>
> make: *** [config] Error 1
>
>
>
> On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote:
>
> Without knowing how your system is configured, this may not help. But on
> the Cray systems we use (they have the modules package installed), if we
> are using a compiler other than GNU (Intel, PGI, etc) but we want to use
> cmake, we still have to load the gcc module (not the programming
> environment, just the module).
>
> On our machines, it means we may load the PrgEnv-Intel module (so cc
> points to icc, ftn points to ifort, etc) but we also have to load
> gcc/<version> to get cmake to work.
>
> Tim
>
> ------------------------------
> *From: *"Aron Ahmadia" <aron.ahmadia at kaust.edu.sa>
> *To: *"For users of the development version of PETSc" <
> petsc-dev at mcs.anl.gov>
> *Sent: *Wednesday, November 30, 2011 3:49:25 PM
> *Subject: *Re: [petsc-dev] metis config error on XT4
>
> looks like a broken cmake...
>
> What happens when you just run: cmake by itself?
>
> A
>
> On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams <mark.adams at columbia.edu>
> wrote:
>
>> I'm getting this error on Franklin at NERSC:
>>
>>
>> *******************************************************************************
>>         UNABLE to CONFIGURE with GIVEN OPTIONS    (see configure.log for
>> details):
>>
>> -------------------------------------------------------------------------------
>> Error running configure on METIS: Could not execute "cd
>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make
>> distclean && make config
>> prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc"
>> doubleprecision=1":
>> rm -rf build/Linux-x86_64
>> rm -rf build/Linux-x86_64
>> mkdir -p build/Linux-x86_64
>> cd build/Linux-x86_64 && cmake
>> /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2
>> -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH=
>> -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt
>> -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
>> cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15'
>> not found (required by cmake)
>> make: *** [config] Error 1
>>
>> *******************************************************************************
>>
>> any ideas?
>>
>> Mark
>>
>
>
>
>
>
>
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