[petsc-dev] metis config error on XT4
Mark F. Adams
mark.adams at columbia.edu
Wed Nov 30 16:30:29 CST 2011
Thanks Tim, I do use gcc. And this is on Franklin at NERSC.
Cmake is just kicking my ass, now I get (appended).
I do have an old version of cmake here:
madams/petsc-dev> which cmake
/usr/common/usg/cmake/2.8.3/bin/cmake
any ideas?
Mark
=============================================================================== Configuring METIS; this may take several minutes =============================================================================== *******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
-------------------------------------------------------------------------------
Error running configure on METIS: Could not execute "cd /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make distclean && make config prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" doubleprecision=1":
rm -rf build/Linux-x86_64
rm -rf build/Linux-x86_64
mkdir -p build/Linux-x86_64
cd build/Linux-x86_64 && cmake /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc
-- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++
-- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Configuring incomplete, errors occurred!
CMake Error at CMakeLists.txt:21 (include):
include could not find load file:
/GKlibSystem.cmake
make: *** [config] Error 1
On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote:
> Without knowing how your system is configured, this may not help. But on the Cray systems we use (they have the modules package installed), if we are using a compiler other than GNU (Intel, PGI, etc) but we want to use cmake, we still have to load the gcc module (not the programming environment, just the module).
>
> On our machines, it means we may load the PrgEnv-Intel module (so cc points to icc, ftn points to ifort, etc) but we also have to load gcc/<version> to get cmake to work.
>
> Tim
>
> From: "Aron Ahmadia" <aron.ahmadia at kaust.edu.sa>
> To: "For users of the development version of PETSc" <petsc-dev at mcs.anl.gov>
> Sent: Wednesday, November 30, 2011 3:49:25 PM
> Subject: Re: [petsc-dev] metis config error on XT4
>
> looks like a broken cmake...
>
> What happens when you just run: cmake by itself?
>
> A
>
> On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams <mark.adams at columbia.edu> wrote:
> I'm getting this error on Franklin at NERSC:
> *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):
> -------------------------------------------------------------------------------
> Error running configure on METIS: Could not execute "cd /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make distclean && make config prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" doubleprecision=1":
> rm -rf build/Linux-x86_64
> rm -rf build/Linux-x86_64
> mkdir -p build/Linux-x86_64
> cd build/Linux-x86_64 && cmake /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1
> cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by cmake)
> make: *** [config] Error 1
> *******************************************************************************
>
> any ideas?
>
> Mark
>
>
>
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