<html><head><base href="x-msg://804/"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div></div><div><div>=============================================================================== Configuring METIS; this may take several minutes =============================================================================== *******************************************************************************</div><div> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):</div><div>-------------------------------------------------------------------------------</div><div>Error running configure on METIS: Could not execute "cd /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make distclean && make config prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" doubleprecision=1":</div><div>rm -rf build/Linux-x86_64</div><div>rm -rf build/Linux-x86_64</div><div>mkdir -p build/Linux-x86_64</div><div>cd build/Linux-x86_64 && cmake /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1</div><div>-- The C compiler identification is GNU</div><div>-- The CXX compiler identification is GNU</div><div>-- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc</div><div>-- Check for working C compiler: /opt/cray/xt-asyncpe/5.01/bin/cc -- works</div><div>-- Detecting C compiler ABI info</div><div>-- Detecting C compiler ABI info - done</div><div>-- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++</div><div>-- Check for working CXX compiler: /opt/gcc/4.5.3/bin/c++ -- works</div><div>-- Detecting CXX compiler ABI info</div><div>-- Detecting CXX compiler ABI info - done</div><div>-- Configuring incomplete, errors occurred!</div><div>CMake Error at CMakeLists.txt:21 (include):</div><div> include could not find load file:</div><div><br></div><div> /GKlibSystem.cmake</div><div><br></div><div><br></div><div>make: *** [config] Error 1</div></div><div><br></div><div><br></div><div><br><div><div>On Nov 30, 2011, at 4:00 PM, Tim Gallagher wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div><div style="font-family: 'Times New Roman'; font-size: 12pt; color: rgb(0, 0, 0); ">Without knowing how your system is configured, this may not help. But on the Cray systems we use (they have the modules package installed), if we are using a compiler other than GNU (Intel, PGI, etc) but we want to use cmake, we still have to load the gcc module (not the programming environment, just the module).<span class="Apple-converted-space"> </span><br><br>On our machines, it means we may load the PrgEnv-Intel module (so cc points to icc, ftn points to ifort, etc) but we also have to load gcc/<version> to get cmake to work.<span class="Apple-converted-space"> </span><br><br>Tim<br><br><hr id="zwchr"><div style="color: rgb(0, 0, 0); font-weight: normal; font-style: normal; text-decoration: none; font-family: Helvetica, Arial, sans-serif; font-size: 12pt; "><b>From:<span class="Apple-converted-space"> </span></b>"Aron Ahmadia" <<a href="mailto:aron.ahmadia@kaust.edu.sa">aron.ahmadia@kaust.edu.sa</a>><br><b>To:<span class="Apple-converted-space"> </span></b>"For users of the development version of PETSc" <<a href="mailto:petsc-dev@mcs.anl.gov">petsc-dev@mcs.anl.gov</a>><br><b>Sent:<span class="Apple-converted-space"> </span></b>Wednesday, November 30, 2011 3:49:25 PM<br><b>Subject:<span class="Apple-converted-space"> </span></b>Re: [petsc-dev] metis config error on XT4<br><br><div dir="ltr">looks like a broken cmake...<div><br></div><div>What happens when you just run: cmake by itself?</div><div><br></div><div>A<br><br><div class="gmail_quote">On Wed, Nov 30, 2011 at 11:47 PM, Mark F. Adams<span class="Apple-converted-space"> </span><span dir="ltr"><<a href="mailto:mark.adams@columbia.edu" target="_blank">mark.adams@columbia.edu</a>></span><span class="Apple-converted-space"> </span>wrote:<br><blockquote class="gmail_quote" style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex; ">I'm getting this error on Franklin at NERSC:<br> *******************************************************************************<br> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):<br>-------------------------------------------------------------------------------<br>Error running configure on METIS: Could not execute "cd /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 && make distclean && make config prefix=/global/homes/m/madams/petsc-dev/arch-xt5-opt cc="cc" doubleprecision=1":<br>rm -rf build/Linux-x86_64<br>rm -rf build/Linux-x86_64<br>mkdir -p build/Linux-x86_64<br>cd build/Linux-x86_64 && cmake /global/u2/m/madams/petsc-dev/externalpackages/metis-5.0.2 -DCMAKE_VERBOSE_MAKEFILE=1 -DGKLIB_PATH= -DCMAKE_INSTALL_PREFIX=/global/homes/m/madams/petsc-dev/arch-xt5-opt -DCMAKE_C_COMPILER=cc -DMETIS_USE_DOUBLEPRECISION=1<br>cmake: /opt/gcc/4.5.3/snos/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found (required by cmake)<br>make: *** [config] Error 1<br>*******************************************************************************<br><br>any ideas?<br><font color="#888888"><br>Mark<br></font></blockquote></div><br></div></div></div><br></div></div><br class="Apple-interchange-newline"></blockquote></div><br></div></body></html>