Sun Studio Performance Library

Satish Balay balay at mcs.anl.gov
Wed May 16 09:28:11 CDT 2007 

We have it working on a solaris [sparc] box - so I'm not sure what the
problem here is..

You can run this in a debugger to chek where it crashing.. If you have
-lsunperf, configure shoul automatically detect it [so no extra option
is necessary]

Also - looks like -lsunperf requires -lsunmath -lm - so perhaps these
need specifying?

[petsc-dev at mcs.anl.gov is not an appropriate list for such
discussions. You can send these issues to petsc-maint at mcs.anl.gov. If
you wish to discuss thse issues in a public list - then you can use
petsc-users at mcs.anl.gov list]

Satish

On Wed, 16 May 2007, Yi-Feng Adam Zhang wrote:

> Hi all,
> 
> Does anyone use the latest Sun Studio Performance Library(libsunperf.a) with
> PETSc?  I just make a compilation but failed in the test stage.
> 
> The configure.py is :
> #!/usr/bin/env python
> if __name__ == '__main__':
>  import sys
>  sys.path.insert(0, '/work/adam/petsc/perf.mpi.suncc.blas.c/config')
>  import configure
>  configure_options = ['--with-cc-cc', '--with-shared=0', '--download-mpich=1',
> '-PETSC_ARCH=solaris2.10-c-debug',
> '--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so', '--with-fc=0']
>  configure.petsc_configure(configure_options)
> 
> 
> The error message I get after issue "make test":
> -bash-3.00# make test
> Running test examples to verify correct installation
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
> processSee
> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
> memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
> memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: ---------------------  Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
> [0]PETSC ERROR:       is given.
> [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
> [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
> [0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c
> [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
> [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
> 14:07:31 2007
> [0]PETSC ERROR: Libraries linked from
> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
> [0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
> [0]PETSC ERROR: Configure options --with-cc-cc
> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
> --with-fc=0 --with-shared=0
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
> file
> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI
> processes
> See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> [cli_1]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
> memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
> memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: ---------------------  Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
> [0]PETSC ERROR:       is given.
> [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
> [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
> [0]PETSC ERR[1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
> memory access out of range
> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [1]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC
> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
> memory corruption errors
> [1]PETSC ERROR: likely location of problem given in stack below
> [1]PETSC ERROR: ---------------------  Stack Frames
> ------------------------------------
> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [1]PETSC ERROR:       INSTEAD the line number of the start of the function
> [1]PETSC ERROR:       is given.
> [1]PETSC ERROR: [1] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
> [1]PETSC ERROR: [1] VecNorm line 148 src/vec/vec/interface/rvector.c
> [1]PETSC ERROR: [1] SNESSolve line 1811 src/snes/interface/snes.OR: [0]
> SNESSolve line 1811 src/snes/interface/snes.c
> [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
> [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
> 14:07:32 2007
> [0]PETSC ERROR: Libraries linked from
> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
> [0]PETSC ERROR: Configure ruc
> [1]PETSC ERROR: [1] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
> [1]PETSC ERROR: [1] DMMGSolve line 250 src/snes/utils/damg.c
> [1]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [1]PETSC ERROR: Signal received!
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [1]PETSC ERROR: See docs/index.html for manual pages.
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
> 14:07:32 2007
> [1]PETSC ERROR: Libraries linked from
> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
> [1]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
> [1]PETSC ERROR: Confign at Tue May 15 11:05:42 2007
> [0]PETSC ERROR: Configure options --with-cc-cc
> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
> --with-fc=0 --with-shared=0
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
> file
> ure options --with-cc-cc
> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
> --with-fc=0 --with-shared=0
> [1]PETSC ERROR:
> ------------------------------------------------------------------------
> [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown
> file
> Possible error running Graphics examples src/snes/examples/tutorials/ex19 1
> MPI process
> See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
> [cli_0]: aborting job:
> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
> memory access out of range
> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
> [0]PETSC ERROR: or see
> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
> memory corruption errors
> [0]PETSC ERROR: likely location of problem given in stack below
> [0]PETSC ERROR: ---------------------  Stack Frames
> ------------------------------------
> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
> [0]PETSC ERROR:       is given.
> [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
> [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
> [0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c
> [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
> [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: Signal received!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
> 14:07:34 2007
> [0]PETSC ERROR: Libraries linked from
> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
> [0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
> [0]PETSC ERROR: Configure options --with-cc-cc
> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
> --with-fc=0 --with-shared=0
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
> file
> Completed test examples
> 
> It looks like there is a fatal error in memory operations at the
> PetscFunctionBegin macro.
> 
> Regards,
> Adam
> 
>

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