Sun Studio Performance Library

Thu May 17 02:27:51 CDT 2007

Hi Satish,

Thanks for your input. I will try to debug it and discuss with the 
petsc-maint alias.

Regards,
Adam

Satish Balay wrote:
> We have it working on a solaris [sparc] box - so I'm not sure what the
> problem here is..
>
> You can run this in a debugger to chek where it crashing.. If you have
> -lsunperf, configure shoul automatically detect it [so no extra option
> is necessary]
>
> Also - looks like -lsunperf requires -lsunmath -lm - so perhaps these
> need specifying?
>
> [petsc-dev at mcs.anl.gov is not an appropriate list for such
> discussions. You can send these issues to petsc-maint at mcs.anl.gov. If
> you wish to discuss thse issues in a public list - then you can use
> petsc-users at mcs.anl.gov list]
>
> Satish
>
> On Wed, 16 May 2007, Yi-Feng Adam Zhang wrote:
>
>   
>> Hi all,
>>
>> Does anyone use the latest Sun Studio Performance Library(libsunperf.a) with
>> PETSc?  I just make a compilation but failed in the test stage.
>>
>> The configure.py is :
>> #!/usr/bin/env python
>> if __name__ == '__main__':
>>  import sys
>>  sys.path.insert(0, '/work/adam/petsc/perf.mpi.suncc.blas.c/config')
>>  import configure
>>  configure_options = ['--with-cc-cc', '--with-shared=0', '--download-mpich=1',
>> '-PETSC_ARCH=solaris2.10-c-debug',
>> '--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so', '--with-fc=0']
>>  configure.petsc_configure(configure_options)
>>
>>
>> The error message I get after issue "make test":
>> -bash-3.00# make test
>> Running test examples to verify correct installation
>> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI
>> processSee
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
>> [cli_0]: aborting job:
>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
>> memory access out of range
>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [0]PETSC ERROR: or see
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
>> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
>> memory corruption errors
>> [0]PETSC ERROR: likely location of problem given in stack below
>> [0]PETSC ERROR: ---------------------  Stack Frames
>> ------------------------------------
>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
>> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
>> [0]PETSC ERROR:       is given.
>> [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
>> [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
>> [0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c
>> [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
>> [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
>> [0]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [0]PETSC ERROR: Signal received!
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
>> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
>> 14:07:31 2007
>> [0]PETSC ERROR: Libraries linked from
>> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
>> [0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
>> [0]PETSC ERROR: Configure options --with-cc-cc
>> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
>> --with-fc=0 --with-shared=0
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
>> file
>> Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI
>> processes
>> See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
>> [cli_0]: aborting job:
>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>> [cli_1]: aborting job:
>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
>> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
>> memory access out of range
>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [0]PETSC ERROR: or see
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
>> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
>> memory corruption errors
>> [0]PETSC ERROR: likely location of problem given in stack below
>> [0]PETSC ERROR: ---------------------  Stack Frames
>> ------------------------------------
>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
>> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
>> [0]PETSC ERROR:       is given.
>> [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
>> [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
>> [0]PETSC ERR[1]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
>> memory access out of range
>> [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [1]PETSC ERROR: or see
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC
>> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
>> memory corruption errors
>> [1]PETSC ERROR: likely location of problem given in stack below
>> [1]PETSC ERROR: ---------------------  Stack Frames
>> ------------------------------------
>> [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
>> [1]PETSC ERROR:       INSTEAD the line number of the start of the function
>> [1]PETSC ERROR:       is given.
>> [1]PETSC ERROR: [1] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
>> [1]PETSC ERROR: [1] VecNorm line 148 src/vec/vec/interface/rvector.c
>> [1]PETSC ERROR: [1] SNESSolve line 1811 src/snes/interface/snes.OR: [0]
>> SNESSolve line 1811 src/snes/interface/snes.c
>> [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
>> [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
>> [0]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [0]PETSC ERROR: Signal received!
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
>> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
>> 14:07:32 2007
>> [0]PETSC ERROR: Libraries linked from
>> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
>> [0]PETSC ERROR: Configure ruc
>> [1]PETSC ERROR: [1] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
>> [1]PETSC ERROR: [1] DMMGSolve line 250 src/snes/utils/damg.c
>> [1]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [1]PETSC ERROR: Signal received!
>> [1]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [1]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
>> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
>> [1]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [1]PETSC ERROR: See docs/index.html for manual pages.
>> [1]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [1]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
>> 14:07:32 2007
>> [1]PETSC ERROR: Libraries linked from
>> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
>> [1]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
>> [1]PETSC ERROR: Confign at Tue May 15 11:05:42 2007
>> [0]PETSC ERROR: Configure options --with-cc-cc
>> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
>> --with-fc=0 --with-shared=0
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
>> file
>> ure options --with-cc-cc
>> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
>> --with-fc=0 --with-shared=0
>> [1]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [1]PETSC ERROR: User provided function() line 0 in unknown directory unknown
>> file
>> Possible error running Graphics examples src/snes/examples/tutorials/ex19 1
>> MPI process
>> See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
>> [cli_0]: aborting job:
>> application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
>> lid velocity = 0.0016, prandtl # = 1, grashof # = 1
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
>> memory access out of range
>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [0]PETSC ERROR: or see
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
>> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
>> memory corruption errors
>> [0]PETSC ERROR: likely location of problem given in stack below
>> [0]PETSC ERROR: ---------------------  Stack Frames
>> ------------------------------------
>> [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
>> [0]PETSC ERROR:       INSTEAD the line number of the start of the function
>> [0]PETSC ERROR:       is given.
>> [0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
>> [0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
>> [0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c
>> [0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
>> [0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
>> [0]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [0]PETSC ERROR: Signal received!
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 19:13:22 CDT
>> 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16
>> 14:07:34 2007
>> [0]PETSC ERROR: Libraries linked from
>> /work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
>> [0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
>> [0]PETSC ERROR: Configure options --with-cc-cc
>> --with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so --download-mpich=1
>> --with-fc=0 --with-shared=0
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown
>> file
>> Completed test examples
>>
>> It looks like there is a fatal error in memory operations at the
>> PetscFunctionBegin macro.
>>
>> Regards,
>> Adam
>>
>>
>>     
>
>   