Sun Studio Performance Library

Yi-Feng Adam Zhang Adam.Zhang at Sun.COM
Wed May 16 01:25:21 CDT 2007 

Hi all,

Does anyone use the latest Sun Studio Performance Library(libsunperf.a) 
with PETSc?  I just make a compilation but failed in the test stage.

The configure.py is :
#!/usr/bin/env python
if __name__ == '__main__':
  import sys
  sys.path.insert(0, '/work/adam/petsc/perf.mpi.suncc.blas.c/config')
  import configure
  configure_options = ['--with-cc-cc', '--with-shared=0', 
'--download-mpich=1',
'-PETSC_ARCH=solaris2.10-c-debug', 
'--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so', '--with-fc=0']
  configure.petsc_configure(configure_options)


The error message I get after issue "make test":
-bash-3.00# make test
Running test examples to verify correct installation
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 MPI 
processSee 
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, 
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see 
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC 
ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to 
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames 
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
[0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
[0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c
[0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
[0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
[0]PETSC ERROR: --------------------- Error Message 
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 
19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 
14:07:31 2007
[0]PETSC ERROR: Libraries linked from 
/work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
[0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
[0]PETSC ERROR: Configure options --with-cc-cc 
--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so 
--download-mpich=1 --with-fc=0 --with-shared=0
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory 
unknown file
Possible error running C/C++ src/snes/examples/tutorials/ex19 with 2 MPI 
processes
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
[cli_1]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 1
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, 
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see 
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC 
ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to 
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames 
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
[0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
[0]PETSC ERR[1]PETSC ERROR: 
------------------------------------------------------------------------
[1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, 
probably memory access out of range
[1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[1]PETSC ERROR: or see 
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[1]PETSC 
ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to 
find memory corruption errors
[1]PETSC ERROR: likely location of problem given in stack below
[1]PETSC ERROR: ---------------------  Stack Frames 
------------------------------------
[1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[1]PETSC ERROR:       INSTEAD the line number of the start of the function
[1]PETSC ERROR:       is given.
[1]PETSC ERROR: [1] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
[1]PETSC ERROR: [1] VecNorm line 148 src/vec/vec/interface/rvector.c
[1]PETSC ERROR: [1] SNESSolve line 1811 src/snes/interface/snes.OR: [0] 
SNESSolve line 1811 src/snes/interface/snes.c
[0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
[0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
[0]PETSC ERROR: --------------------- Error Message 
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 
19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 
14:07:32 2007
[0]PETSC ERROR: Libraries linked from 
/work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
[0]PETSC ERROR: Configure ruc
[1]PETSC ERROR: [1] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
[1]PETSC ERROR: [1] DMMGSolve line 250 src/snes/utils/damg.c
[1]PETSC ERROR: --------------------- Error Message 
------------------------------------
[1]PETSC ERROR: Signal received!
[1]PETSC ERROR: 
------------------------------------------------------------------------
[1]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 
19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
[1]PETSC ERROR: See docs/changes/index.html for recent updates.
[1]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[1]PETSC ERROR: See docs/index.html for manual pages.
[1]PETSC ERROR: 
------------------------------------------------------------------------
[1]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 
14:07:32 2007
[1]PETSC ERROR: Libraries linked from 
/work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
[1]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
[1]PETSC ERROR: Confign at Tue May 15 11:05:42 2007
[0]PETSC ERROR: Configure options --with-cc-cc 
--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so 
--download-mpich=1 --with-fc=0 --with-shared=0
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory 
unknown file
ure options --with-cc-cc 
--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so 
--download-mpich=1 --with-fc=0 --with-shared=0
[1]PETSC ERROR: 
------------------------------------------------------------------------
[1]PETSC ERROR: User provided function() line 0 in unknown directory 
unknown file
Possible error running Graphics examples 
src/snes/examples/tutorials/ex19 1 MPI process
See http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html
[cli_0]: aborting job:
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0
lid velocity = 0.0016, prandtl # = 1, grashof # = 1
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, 
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see 
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC 
ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to 
find memory corruption errors
[0]PETSC ERROR: likely location of problem given in stack below
[0]PETSC ERROR: ---------------------  Stack Frames 
------------------------------------
[0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available,
[0]PETSC ERROR:       INSTEAD the line number of the start of the function
[0]PETSC ERROR:       is given.
[0]PETSC ERROR: [0] VecNorm_MPI line 57 src/vec/vec/impls/mpi/pvec2.c
[0]PETSC ERROR: [0] VecNorm line 148 src/vec/vec/interface/rvector.c
[0]PETSC ERROR: [0] SNESSolve line 1811 src/snes/interface/snes.c
[0]PETSC ERROR: [0] DMMGSolveSNES line 402 src/snes/utils/damgsnes.c
[0]PETSC ERROR: [0] DMMGSolve line 250 src/snes/utils/damg.c
[0]PETSC ERROR: --------------------- Error Message 
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 2.3.2, Patch 10, Wed Mar 28 
19:13:22 CDT 2007 HG revision: d7298c71db7f5e767f359ae35d33cab3bed44428
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: ./ex19 on a solaris2. named newjersey by root Wed May 16 
14:07:34 2007
[0]PETSC ERROR: Libraries linked from 
/work/adam/petsc/perf.mpi.suncc.blas.c/lib/solaris2.10-c-debug
[0]PETSC ERROR: Configure run at Tue May 15 11:05:42 2007
[0]PETSC ERROR: Configure options --with-cc-cc 
--with-blas-lapack-lib=/opt/SUNWspro/lib/libsunperf.so 
--download-mpich=1 --with-fc=0 --with-shared=0
[0]PETSC ERROR: 
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory 
unknown file
Completed test examples

It looks like there is a fatal error in memory operations at the 
PetscFunctionBegin macro.

Regards,
Adam

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