Parallel NetCDF Configure Error

Gates, Jason Matthew jmgate at sandia.gov
Tue Jul 30 10:22:09 CDT 2019


?Good morning,


I'm trying to build pnetcdf-1.11.2, but I'm running into the following configure error:


checking whether we are cross compiling... configure: error: in `/Users/jmgate/toolchain/build/pnetcdf-1.11.2':

configure: error: cannot run C compiled programs.

If you meant to cross compile, use `--host'.

See `config.log' for more details


The config.log file and the full output from the following configure command


/Users/jmgate/toolchain/src/pnetcdf-1.11.2/configure --prefix=${TOOLCHAIN_INSTALL}/pnetcdf-1.11.2 2>&1 | tee config$(date +%y%m%d%H%M%S).log


are attached.  My compiler/TPL stack so far (and not all these are relevant, but included for the sake of completeness) is

  *   ??gcc-9.1.0
  *   openmpi-4.0.1
  *   cmake-3.15.0
  *   python-?3.7.3
  *   lapack-3.8.0
  *   boost-1.70.0
  *   zlib-1.2.11
  *   hdf5-1.10.5

This is on Mac OS-X 10.14.6.  Any help resolving the configure error would be appreciated.

Many thanks,

Jason M. Gates

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