This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by PnetCDF configure 1.11.2, which was generated by GNU Autoconf 2.69. Invocation command line was $ /Users/jmgate/toolchain/src/pnetcdf-1.11.2/configure --prefix=/Users/jmgate/toolchain/install/pnetcdf-1.11.2 ## --------- ## ## Platform. ## ## --------- ## hostname = s1042189 uname -m = x86_64 uname -r = 18.7.0 uname -s = Darwin uname -v = Darwin Kernel Version 18.7.0: Thu Jun 20 18:42:21 PDT 2019; root:xnu-4903.270.47~4/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 18.7.0: Thu Jun 20 18:42:21 PDT 2019; root:xnu-4903.270.47~4/RELEASE_X86_64 Kernel configured for up to 16 processors. 8 processors are physically available. 16 processors are logically available. Processor type: x86_64h (Intel x86-64h Haswell) Processors active: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Primary memory available: 32.00 gigabytes Default processor set: 426 tasks, 1518 threads, 16 processors Load average: 1.57, Mach factor: 14.42 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Users/jmgate/toolchain/install/hdf5-1.10.5/bin PATH: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin PATH: /Users/jmgate/toolchain/install/gcc-9.1.0/bin PATH: /anaconda3/bin PATH: /anaconda3/condabin PATH: /usr/local/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin ## ----------- ## ## Core tests. ## ## ----------- ## ------------------------------- User environment variables: ------------------------------- BLAS_LIB=/Users/jmgate/toolchain/install/lapack-3.8.0/lib64/libblas.so.3 TERM_PROGRAM=Apple_Terminal TERM=xterm-256color SHELL=/bin/sh TMPDIR=/var/folders/lq/z2gz099j7pz6bwkx3zlvg97r002c31/T/ Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.WgAWI5YFyg/Render CONDA_SHLVL=1 TOOLCHAIN_INSTALL=/Users/jmgate/toolchain/install TERM_PROGRAM_VERSION=421.2 CONDA_PROMPT_MODIFIER=(base) TERM_SESSION_ID=7E63B113-3ED1-41C0-9604-829473DC5041 DUALCASE=1 LC_ALL=C TOOLCHAIN_ROOT=/Users/jmgate/toolchain USER=jmgate LAPACK_ROOT=/Users/jmgate/toolchain/install/lapack-3.8.0 CONDA_EXE=/anaconda3/bin/conda SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.4HyjIuq5wB/Listeners TOOLCHAIN_BUILD=/Users/jmgate/toolchain/build _CE_CONDA= PATH=/Users/jmgate/toolchain/install/hdf5-1.10.5/bin:/Users/jmgate/toolchain/install/openmpi-4.0.1/bin:/Users/jmgate/toolchain/install/gcc-9.1.0/bin:/anaconda3/bin:/anaconda3/condabin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin CONDA_PREFIX=/anaconda3 PWD=/Users/jmgate/toolchain/build/pnetcdf-1.11.2 HDF5_ROOT=/Users/jmgate/toolchain/install/hdf5-1.10.5 LANG=en_US.UTF-8 LABACK_LIB=/Users/jmgate/toolchain/install/lapack-3.8.0/lib64/liblapack.so.3 XPC_FLAGS=0x0 XPC_SERVICE_NAME=0 _CE_M= HOME=/Users/jmgate SHLVL=2 LANGUAGE=C no_proxy=.sandia.gov,localhost LOGNAME=jmgate BOOST_ROOT=/Users/jmgate/toolchain/install/boost-1.70.0 as_nl= CONDA_DEFAULT_ENV=base TOOLCHAIN_SRC=/Users/jmgate/toolchain/src SECURITYSESSIONID=186aa _=/usr/bin/env ------------------------------- configure:3278: checking for a BSD-compatible install configure:3346: result: /usr/bin/install -c configure:3357: checking whether build environment is sane configure:3412: result: yes configure:3563: checking for a thread-safe mkdir -p configure:3602: result: /Users/jmgate/toolchain/src/pnetcdf-1.11.2/./scripts/install-sh -c -d configure:3609: checking for gawk configure:3639: result: no configure:3609: checking for mawk configure:3639: result: no configure:3609: checking for nawk configure:3639: result: no configure:3609: checking for awk configure:3625: found /usr/bin/awk configure:3636: result: awk configure:3647: checking whether make sets $(MAKE) configure:3669: result: yes configure:3698: checking whether make supports nested variables configure:3715: result: yes configure:3852: checking whether make supports nested variables configure:3869: result: yes configure:3882: checking whether to enable maintainer-specific portions of Makefiles configure:3891: result: yes configure:4258: checking for mpicc configure:4276: found /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc configure:4288: result: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc configure:4542: checking for gcc configure:4569: result: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc configure:4798: checking for C compiler version configure:4807: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc --version >&5 gcc (GCC) 9.1.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4818: $? = 0 configure:4807: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc -v >&5 Using built-in specs. COLLECT_GCC=/Users/jmgate/toolchain/install/gcc-9.1.0/bin/gcc COLLECT_LTO_WRAPPER=/Users/jmgate/toolchain/install/gcc-9.1.0/libexec/gcc/x86_64-apple-darwin18.6.0/9.1.0/lto-wrapper Target: x86_64-apple-darwin18.6.0 Configured with: /Users/jmgate/toolchain/src/gcc-9.1.0/configure --disable-multilib --prefix=/Users/jmgate/toolchain/install/gcc-9.1.0 Thread model: posix gcc version 9.1.0 (GCC) configure:4818: $? = 0 configure:4807: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:4818: $? = 1 configure:4807: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:4818: $? = 1 configure:4838: checking whether the C compiler works configure:4860: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc conftest.c >&5 configure:4864: $? = 0 configure:4912: result: yes configure:4915: checking for C compiler default output file name configure:4917: result: a.out configure:4923: checking for suffix of executables configure:4930: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc -o conftest conftest.c >&5 configure:4934: $? = 0 configure:4956: result: configure:4978: checking whether we are cross compiling configure:4986: /Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc -o conftest conftest.c >&5 In file included from conftest.c:11: /Users/jmgate/toolchain/install/gcc-9.1.0/lib/gcc/x86_64-apple-darwin18.6.0/9.1.0/include-fixed/stdio.h:78:10: fatal error: _stdio.h: No such file or directory 78 | #include <_stdio.h> | ^~~~~~~~~~ compilation terminated. configure:4990: $? = 1 configure:4997: ./conftest /Users/jmgate/toolchain/src/pnetcdf-1.11.2/configure: line 4999: ./conftest: No such file or directory configure:5001: $? = 127 configure:5008: error: in `/Users/jmgate/toolchain/build/pnetcdf-1.11.2': configure:5010: error: cannot run C compiled programs. If you meant to cross compile, use `--host'. See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_GCOV_set= ac_cv_env_GCOV_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_MPIF77_set= ac_cv_env_MPIF77_value= ac_cv_env_MPIF90_set= ac_cv_env_MPIF90_value= ac_cv_env_RM_set= ac_cv_env_RM_value= ac_cv_env_TESTMPIRUN_set= ac_cv_env_TESTMPIRUN_value= ac_cv_env_TESTOUTDIR_set= ac_cv_env_TESTOUTDIR_value= ac_cv_env_TESTSEQRUN_set= ac_cv_env_TESTSEQRUN_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_path_ac_mpi_prog_MPICC=/Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_ac_ct_CC=/Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc ac_cv_prog_make_make_set=yes am_cv_make_support_nested_variables=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## ABIVERSION='' ABIVERSIONFLAGS='' ACLOCAL='${SHELL} /Users/jmgate/toolchain/src/pnetcdf-1.11.2/scripts/missing aclocal-1.15' AMDEPBACKSLASH='' AMDEP_FALSE='' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='0' AM_V='$(V)' AR='' AUTOCONF='${SHELL} /Users/jmgate/toolchain/src/pnetcdf-1.11.2/scripts/missing autoconf' AUTOHEADER='${SHELL} /Users/jmgate/toolchain/src/pnetcdf-1.11.2/scripts/missing autoheader' AUTOMAKE='${SHELL} /Users/jmgate/toolchain/src/pnetcdf-1.11.2/scripts/missing automake-1.15' AWK='awk' BUILD_BENCHMARKS_IN_PNETCDF_FALSE='' BUILD_BENCHMARKS_IN_PNETCDF_TRUE='' BUILD_COVERAGE_FALSE='' BUILD_COVERAGE_TRUE='' BUILD_DOCS_FALSE='' BUILD_DOCS_TRUE='' BUILD_DRIVER_FOO_FALSE='' BUILD_DRIVER_FOO_TRUE='' BUILD_SHARED_LIB_FALSE='' BUILD_SHARED_LIB_TRUE='' BUILD_TESTSETS_FALSE='' BUILD_TESTSETS_TRUE='' CC='/Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc' CCDEPMODE='' CFLAGS='' CONFIGURE_ARGS_CLEAN='--prefix=/Users/jmgate/toolchain/install/pnetcdf-1.11.2' CONFIG_DATE='' CPP='' CPPFLAGS='' CXX='' CXXCPP='' CXXDEPMODE='' CXXFLAGS='' CYGPATH_W='echo' DECL_MPI_OFFSET_FALSE='' DECL_MPI_OFFSET_TRUE='' DEFS='' DEPDIR='' DLLTOOL='' DSYMUTIL='' DUMPBIN='' DVIPDF='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='' ENABLE_BURST_BUFFER='' ENABLE_BURST_BUFFER_FALSE='' ENABLE_BURST_BUFFER_TRUE='' ENABLE_ERANGE_FILL='' ENABLE_ERANGE_FILL_FALSE='' ENABLE_ERANGE_FILL_TRUE='' ENABLE_LARGE_SINGLE_REQ='' ENABLE_LARGE_SINGLE_REQ_FALSE='' ENABLE_LARGE_SINGLE_REQ_TRUE='' ENABLE_NETCDF4='' ENABLE_NETCDF4_FALSE='' ENABLE_NETCDF4_TRUE='' ENABLE_NULL_BYTE_HEADER_PADDING='' ENABLE_REQ_AGGREGATION='' ENABLE_SUBFILING='' ENABLE_SUBFILING_FALSE='' ENABLE_SUBFILING_TRUE='' ENABLE_THREAD_SAFE='' ENABLE_THREAD_SAFE_FALSE='' ENABLE_THREAD_SAFE_TRUE='' EXEEXT='' F77='' FC='' FCFLAGS='' FCFLAGS_F90='' FCFLAGS_F='' FCFLAGS_f90='' FCFLAGS_f='' FCLIBS='' FC_DEFINE='' FC_DEFS='' FC_MODEXT='' FC_MODINC='' FFIXEDFORMFLAG='' FFLAGS='' FFREEFORMFLAG='' FGREP='' FLIBS='' GCOV='' GREP='' HAS_FORTRAN_FALSE='' HAS_FORTRAN_TRUE='' HAS_LATEX_FALSE='' HAS_LATEX_TRUE='' HAS_MPICXX_FALSE='' HAS_MPICXX_TRUE='' HAVE_F77_GNU_INT='' HAVE_F77_GNU_INT_FALSE='' HAVE_F77_GNU_INT_TRUE='' HAVE_F77_INT1='' HAVE_F77_INT1_FALSE='' HAVE_F77_INT1_TRUE='' HAVE_F77_INT2='' HAVE_F77_INT2_FALSE='' HAVE_F77_INT2_TRUE='' HAVE_F77_INT8='' HAVE_F77_INT8_FALSE='' HAVE_F77_INT8_TRUE='' HAVE_F77_SUPPORT_FREEFORM_FALSE='' HAVE_F77_SUPPORT_FREEFORM_TRUE='' HAVE_MPI_MOD_FALSE='' HAVE_MPI_MOD_TRUE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INTENTV='' IN_PLACE_SWAP='' IS_BIGENDIAN_FALSE='' IS_BIGENDIAN_TRUE='' LATEX='' LD='' LDFLAGS='' LIBOBJS='' LIBS='' LIBTOOL='' LIPO='' LN_S='' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' M4='' M4FFLAGS='' M4FLAGS='' MAINT='' MAINTAINER_MODE_FALSE='#' MAINTAINER_MODE_TRUE='' MAKEINFO='${SHELL} /Users/jmgate/toolchain/src/pnetcdf-1.11.2/scripts/missing makeinfo' MANIFEST_TOOL='' MKDIR_P='/Users/jmgate/toolchain/src/pnetcdf-1.11.2/./scripts/install-sh -c -d' MPICC='/Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc' MPICC_IS_FCCPX_FALSE='' MPICC_IS_FCCPX_TRUE='' MPICC_IS_PGCC_FALSE='' MPICC_IS_PGCC_TRUE='' MPICC_IS_XLC_FALSE='' MPICC_IS_XLC_TRUE='' MPICXX='' MPIF77='' MPIF90='' NETCDF4_INC='' NETCDF4_LDFLAGS='' NETCDF4_LIBS='' NETCDF4_PACKAGE='' NF_INT1_T='' NF_INT2_T='' NF_INT8_T='' NM='' NMEDIT='' NMFLAGS='' OBJDUMP='' OBJEXT='' OTOOL64='' OTOOL='' PACKAGE='pnetcdf' PACKAGE_BUGREPORT='parallel-netcdf@mcs.anl.gov' PACKAGE_NAME='PnetCDF' PACKAGE_STRING='PnetCDF 1.11.2' PACKAGE_TARNAME='pnetcdf' PACKAGE_URL='https://parallel-netcdf.github.io' PACKAGE_VERSION='1.11.2' PATH_SEPARATOR=':' PNETCDF_DEBUG='' PNETCDF_DEBUG_FALSE='' PNETCDF_DEBUG_TRUE='' PNETCDF_PROFILING='' PNETCDF_PROFILING_FALSE='' PNETCDF_PROFILING_TRUE='' PNETCDF_RELEASE_DATE='July 30, 2019' PNETCDF_RELEASE_DATE_FULL='2019-07-30' PNETCDF_VERSION='1.11.2' PNETCDF_VERSION_MAJOR='1' PNETCDF_VERSION_MINOR='11' PNETCDF_VERSION_PRE='' PNETCDF_VERSION_SUB='2' PNF_FILL_INT64='' PNF_FILL_UINT64='' PNF_FILL_UINT='' PNF_INT8_MODIFIER='' PNF_X_INT8_MAX='' PNF_X_INT8_MIN='' PNF_X_UINT8_MAX='' PNF_X_UINT_MAX='' RANLIB='' RELAX_COORD_BOUND='' RELAX_COORD_BOUND_FALSE='' RELAX_COORD_BOUND_TRUE='' REPLACE_CXX_FUNC_MACRO_FALSE='' REPLACE_CXX_FUNC_MACRO_TRUE='' RM='rm' RUN_LARGE_FILE_TEST_FALSE='' RUN_LARGE_FILE_TEST_TRUE='' SED='' SED_I='' SEEK_SET_REDEFINED_FALSE='' SEEK_SET_REDEFINED_TRUE='' SEQ_CC='' SET_MAKE='' SHELL='/bin/sh' SIZEOF_MPI_AINT_IS_4_FALSE='' SIZEOF_MPI_AINT_IS_4_TRUE='' SIZEOF_MPI_OFFSET='' STRIP='' TESTMPIRUN='' TESTOUTDIR='' TESTSEQRUN='' UPPER_CASE_MOD_FALSE='' UPPER_CASE_MOD_TRUE='' USE_MPIF_HEADER='' VERSION='1.11.2' ac_ct_AR='' ac_ct_CC='/Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_F77='' ac_ct_FC='' ac_cv_c_bigendian='' ac_empty='' ac_mpi_prog_MPICC='/Users/jmgate/toolchain/install/openmpi-4.0.1/bin/mpicc' ac_mpi_prog_MPICXX='' ac_mpi_prog_MPIF77='' ac_mpi_prog_MPIF90='' ac_mpi_prog_TESTMPIRUN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='' am__include='' am__isrc=' -I$(srcdir)' am__leading_dot='.' am__nodep='' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='' build_alias='' build_cpu='' build_os='' build_vendor='' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_netcdf4='' enable_shared='' enable_static='' exec_prefix='NONE' has_fortran='' has_mpicxx='' host='' host_alias='' host_cpu='' host_os='' host_vendor='' htmldir='${docdir}' in_place_swap='' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/jmgate/toolchain/src/pnetcdf-1.11.2/scripts/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' nc_config='' netcdf_libdir='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/jmgate/toolchain/install/pnetcdf-1.11.2' program_transform_name='s,x,x,' psdir='${docdir}' rm_cmd='' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "PnetCDF" #define PACKAGE_TARNAME "pnetcdf" #define PACKAGE_VERSION "1.11.2" #define PACKAGE_STRING "PnetCDF 1.11.2" #define PACKAGE_BUGREPORT "parallel-netcdf@mcs.anl.gov" #define PACKAGE_URL "https://parallel-netcdf.github.io" #define PACKAGE "pnetcdf" #define VERSION "1.11.2" configure: exit 1