[pnetcdf-devel] [parallel-netcdf] #31: Problem installing pnetcdf on 64 bit Ubuntu machine with intel compilers

[Steve Brenner]

Wei-keng


I have done a bit more digging and tried building it again but this time instead of using CC=icc CXX=icpc  FC=ifort I now used  CC=mpicc CXX=mpicxx MPIF90=mpifort which it picks up from /usr/local/bin. It now completes the build and the two tests (make check and make ptest). When I ran make install it appears to run except for the last few steps where it says


rm -f pnetcdf.pc
sed -e "s%INSTALL_PREFIX%/usr/local%g" pnetcdf_pc > pnetcdf.pc
sed: can't read pnetcdf_pc: No such file or directory
Makefile:147: recipe for target 'install_PKGCONFIG' failed
make: *** [install_PKGCONFIG] Error 2


When I look in /usr/local/include and /usr/local/lib the pnetcdf file are there. I will try running a test code tomorrow.


Best regards


Steve Brenner, Professor
Department of Geography and Environment
Bar Ilan University
Ramat Gan, Israel

Phone:       +972 3 5318973
Secretary: +972 3 531 8340
Fax:            +972 3 7384033

E-mail:       steve.brenner at biu.ac.il
Web site:    geoenv.biu.ac.il/en/Steve_Brenner



________________________________
From: Wei-keng Liao <wkliao at eecs.northwestern.edu>
Sent: Thursday, June 8, 2017 10:09
To: sbrenner at mail.biu.ac.il
Cc: parallel-netcdf at mcs.anl.gov
Subject: Re: [pnetcdf-devel] [parallel-netcdf] #31: Problem installing pnetcdf on 64 bit Ubuntu machine with intel compilers

I do not have access to the exactly same environment, but just now built
PnetCDF 1.8.1 on an x86_64 with Ubuntu 14.04, using mpich 3.2. built with
icc/ifort 16.0.3 and 17.0.2. The build was successful.

If the build hung at the compile time, then I would guess it most likely
is an issue of the compiler. Can check your MPI fortran compiler to
make sure it compiles other F90 programs without problems.

Wei-keng

On Jun 8, 2017, at 12:48 AM, parallel-netcdf wrote:

> #31: Problem installing pnetcdf on 64 bit Ubuntu machine with intel compilers
> -------------------------------------+--------------------------------------
> Reporter:  sbrenner@…               |       Owner:  robl
>     Type:  defect/bug               |      Status:  new
> Priority:  major                    |   Milestone:
> Component:  parallel-netcdf          |     Version:  1.8.1
> Keywords:                           |
> -------------------------------------+--------------------------------------
> I am trying to install pnetcdf on a i7 machine running Ubuntu linux 16.04
> with the intel 2017 c, c++ and fortran compliers. It configues ok but in
> the make step it hangs when trying to compile pnetcdf.f90 (no error is
> returned, it simple is stuck in the compilation step). I have tried both
> versions 1.8.1 and 1.7.0. Any suggestions?
>
> --
> Ticket URL: <http://trac.mcs.anl.gov/projects/parallel-netcdf/ticket/31>
> parallel-netcdf <https://trac.mcs.anl.gov/projects/parallel-netcdf>
Parallel netCDF: A Parallel I/O Library for NetCDF File Access<https://trac.mcs.anl.gov/projects/parallel-netcdf>
trac.mcs.anl.gov
Parallel netCDF: A Parallel I/O Library for NetCDF File Access. Parallel netCDF (PnetCDF) is jointly developed by Northwestern University and Argonne National Laboratory.


>
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