input/output errors from "make check"

Carl Ponder cponder at nvidia.com
Thu May 28 02:00:35 CDT 2015


*On 05/27/2015 06:41 PM, Wei-keng Liao wrote: *
>
>     However, you should see the same error messages when testing C
>     programs, i.e. nc_test. Is it not the case for you? 
>
Ok -- I did get the same errors in the C part of the testing.
>
>     As for the issue you encountered when using PGI compilers, can you
>     send me the file config.log and show me the standard output on
>     screen where the program hangs?
>     A successful run of "make check" should look like below. Are you
>     saying it does not show this first line when entering directory
>     nf90_test?
>
>         *** TESTING F90 ./nf90_test for CDF-1                   
>         ------ pass 
>
Here's the point where it hung

    /shared/apps/centos-6.6_SB/OpenMPI/1.8.5/PGI-15.5_CUDA-7.0_HWLoc-1.10.1_NUMACtl-2.0.9/bin/mpif90
    -fPIC -m64 -tp=px -o nf90_test fortlib.o nf90_error.o nf90_test.o
    test_read.o test_write.o util.o test_get.o test_put.o test_iget.o
    test_iput.o
    /shared/apps/centos-6.6_SB/PNetCDF/1.6.0/OpenMPI-1.8.5_PGI-15.5_CUDA-7.0/distro/src/lib/libpnetcdf.a

    rm -f ./scratch.nc ./test.nc
    ./nf90_test -c    -d .
    ./nf90_test       -d .
    =>> PBS: job killed: walltime 3636 exceeded limit 3600

so it finished the F77 tests and had just built the F90 tests.
This looks like an issue with the PGI 15.5 compiler, I'd like to be able 
to reproduce the hang if I can.
Theconfig.log is attached here.
Thanks,

                 Carl

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