[mpich-discuss] Newbie getting started question?

John Chludzinski john.chludzinski at gmail.com
Fri Sep 14 21:37:21 CDT 2012


Just ran: yum install mpich2-devel

# ls -l /usr/lib/mpich2/lib/
total 7484
-rw-r--r--. 1 root root   25459 Jan  2  2012 clog2print.jar
-rw-r--r--. 1 root root  127339 Jan  2  2012 clog2TOdrawable.jar
-rw-r--r--. 1 root root  183747 Jan  2  2012 clog2TOslog2.jar
-rw-r--r--. 1 root root   17400 Jan  2  2012 clogprint.jar
-rw-r--r--. 1 root root  108290 Jan  2  2012 clogTOdrawable.jar
-rw-r--r--. 1 root root  164701 Jan  2  2012 clogTOslog2.jar
-rw-r--r--. 1 root root 2449314 Jan  2  2012 jumpshot.jar
-rw-r--r--. 1 root root    7140 Jan  2  2012 jumpshot_launcher.jar
-rw-r--r--. 1 root root   16278 Jan  2  2012 libampe.a
lrwxrwxrwx. 1 root root      16 Sep 14 22:33 libfmpich.so ->
libfmpich.so.3.3
lrwxrwxrwx. 1 root root      16 Sep 14 16:20 libfmpich.so.3 ->
libfmpich.so.3.3
-rwxr-xr-x. 1 root root  121604 Jan  2  2012 libfmpich.so.3.3
-rw-r--r--. 1 root root  271832 Jan  2  2012 liblmpe.a
-rw-r--r--. 1 root root  237292 Jan  2  2012 libmpe.a
-rw-r--r--. 1 root root  182660 Jan  2  2012 libmpe_collchk.a
-rw-r--r--. 1 root root   36448 Jan  2  2012 libmpe_f2cmpi.a
-rw-r--r--. 1 root root  219056 Jan  2  2012 libmpe_nompi.a
-rw-r--r--. 1 root root   20776 Jan  2  2012 libmpe_nompi_null.a
-rw-r--r--. 1 root root   10356 Jan  2  2012 libmpe_null.a
lrwxrwxrwx. 1 root root      18 Sep 14 22:33 libmpichcxx.so ->
libmpichcxx.so.3.3
lrwxrwxrwx. 1 root root      18 Sep 14 16:20 libmpichcxx.so.3 ->
libmpichcxx.so.3.3
-rwxr-xr-x. 1 root root  116756 Jan  2  2012 libmpichcxx.so.3.3
lrwxrwxrwx. 1 root root      18 Sep 14 22:33 libmpichf90.so ->
libmpichf90.so.3.3
lrwxrwxrwx. 1 root root      18 Sep 14 16:20 libmpichf90.so.3 ->
libmpichf90.so.3.3
-rwxr-xr-x. 1 root root    5644 Jan  2  2012 libmpichf90.so.3.3
lrwxrwxrwx. 1 root root      15 Sep 14 22:33 libmpich.so -> libmpich.so.3.3
lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libmpich.so.3 ->
libmpich.so.3.3
-rwxr-xr-x. 1 root root 1861652 Jan  2  2012 libmpich.so.3.3
lrwxrwxrwx. 1 root root      15 Sep 14 22:33 libmpl.so -> libmpl.so.1.1.0
lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libmpl.so.1 -> libmpl.so.1.1.0
-rwxr-xr-x. 1 root root   15612 Jan  2  2012 libmpl.so.1.1.0
lrwxrwxrwx. 1 root root      15 Sep 14 22:33 libopa.so -> libopa.so.1.0.0
lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libopa.so.1 -> libopa.so.1.0.0
-rwxr-xr-x. 1 root root    3940 Jan  2  2012 libopa.so.1.0.0
-rw-r--r--. 1 root root   86000 Jan  2  2012 libtmpe.a
-rw-r--r--. 1 root root  265485 Jan  2  2012 logconvertor.jar
-rw-r--r--. 1 root root   10760 Jan  2  2012 mpe_prof.o
-rw-r--r--. 1 root root  173622 Jan  2  2012 slog2filter.jar
-rw-r--r--. 1 root root  136084 Jan  2  2012 slog2navigator.jar
-rw-r--r--. 1 root root  136091 Jan  2  2012 slog2printrecur.jar
-rw-r--r--. 1 root root  136086 Jan  2  2012 slog2printserial.jar
-rw-r--r--. 1 root root  261610 Jan  2  2012 slog2update205to206.jar
-rw-r--r--. 1 root root   67742 Jan  2  2012 traceprint.jar
drwxr-xr-x. 2 root root    4096 Sep 14 22:33 trace_rlog
-rw-r--r--. 1 root root  124160 Jan  2  2012 traceTOslog2.jar


On Fri, Sep 14, 2012 at 8:08 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:

> This package is missing the symlinks libmpich.so -> libmpich.so.3.3. Is
> there a separate mpich2-devel package?
>
> On Fri, Sep 14, 2012 at 6:57 PM, John Chludzinski <
> john.chludzinski at gmail.com> wrote:
>
>> $ ls -l /usr/lib/mpich2/lib
>> total 6412
>> -rw-r--r--. 1 root root   25459 Jan  2  2012 clog2print.jar
>> -rw-r--r--. 1 root root  127339 Jan  2  2012 clog2TOdrawable.jar
>> -rw-r--r--. 1 root root  183747 Jan  2  2012 clog2TOslog2.jar
>> -rw-r--r--. 1 root root   17400 Jan  2  2012 clogprint.jar
>> -rw-r--r--. 1 root root  108290 Jan  2  2012 clogTOdrawable.jar
>> -rw-r--r--. 1 root root  164701 Jan  2  2012 clogTOslog2.jar
>> -rw-r--r--. 1 root root 2449314 Jan  2  2012 jumpshot.jar
>> -rw-r--r--. 1 root root    7140 Jan  2  2012 jumpshot_launcher.jar
>> lrwxrwxrwx. 1 root root      16 Sep 14 16:20 libfmpich.so.3 ->
>> libfmpich.so.3.3
>> -rwxr-xr-x. 1 root root  121604 Jan  2  2012 libfmpich.so.3.3
>> lrwxrwxrwx. 1 root root      18 Sep 14 16:20 libmpichcxx.so.3 ->
>> libmpichcxx.so.3.3
>> -rwxr-xr-x. 1 root root  116756 Jan  2  2012 libmpichcxx.so.3.3
>> lrwxrwxrwx. 1 root root      18 Sep 14 16:20 libmpichf90.so.3 ->
>> libmpichf90.so.3.3
>> -rwxr-xr-x. 1 root root    5644 Jan  2  2012 libmpichf90.so.3.3
>> lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libmpich.so.3 ->
>> libmpich.so.3.3
>> -rwxr-xr-x. 1 root root 1861652 Jan  2  2012 libmpich.so.3.3
>> lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libmpl.so.1 ->
>> libmpl.so.1.1.0
>> -rwxr-xr-x. 1 root root   15612 Jan  2  2012 libmpl.so.1.1.0
>> lrwxrwxrwx. 1 root root      15 Sep 14 16:20 libopa.so.1 ->
>> libopa.so.1.0.0
>> -rwxr-xr-x. 1 root root    3940 Jan  2  2012 libopa.so.1.0.0
>> -rw-r--r--. 1 root root  265485 Jan  2  2012 logconvertor.jar
>> -rw-r--r--. 1 root root   10760 Jan  2  2012 mpe_prof.o
>> -rw-r--r--. 1 root root  173622 Jan  2  2012 slog2filter.jar
>> -rw-r--r--. 1 root root  136084 Jan  2  2012 slog2navigator.jar
>> -rw-r--r--. 1 root root  136091 Jan  2  2012 slog2printrecur.jar
>> -rw-r--r--. 1 root root  136086 Jan  2  2012 slog2printserial.jar
>> -rw-r--r--. 1 root root  261610 Jan  2  2012 slog2update205to206.jar
>> -rw-r--r--. 1 root root   67742 Jan  2  2012 traceprint.jar
>> -rw-r--r--. 1 root root  124160 Jan  2  2012 traceTOslog2.jar
>>
>>
>> $ mpif90 -show
>> gfortran -m32 -O2 -fPIC -Wl,-z,noexecstack -I/usr/include/mpich2-i386
>> -I/usr/include/mpich2-i386 -L/usr/lib/mpich2/lib -lmpichf90 -lmpichf90
>> -lmpich
>>
>> On Fri, Sep 14, 2012 at 7:54 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:
>>
>>> On Fri, Sep 14, 2012 at 6:41 PM, John Chludzinski <
>>> john.chludzinski at gmail.com> wrote:
>>>
>>>> MPICH2 Version:        1.4.1p1
>>>> MPICH2 Release date:    Thu Sep  1 13:53:02 CDT 2011
>>>> MPICH2 Device:        ch3:nemesis
>>>> MPICH2 configure:     --build=i386-redhat-linux-gnu
>>>> --host=i386-redhat-linux-gnu --program-prefix=
>>>> --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr
>>>> --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc
>>>> --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib
>>>> --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib
>>>> --mandir=/usr/share/man --infodir=/usr/share/info --enable-sharedlibs=gcc
>>>> --enable-shared --enable-lib-depend --disable-rpath
>>>
>>>
>>> Because of this option, you will need
>>> LD_LIBRARY_PATH=/usr/lib/mpich2/lib to run executables.
>>>
>>>
>>>> --enable-fc --with-device=ch3:nemesis --with-pm=hydra:gforker
>>>> --sysconfdir=/etc/mpich2-i386 --includedir=/usr/include/mpich2-i386
>>>> --bindir=/usr/lib/mpich2/bin --libdir=/usr/lib/mpich2/lib
>>>
>>>
>>>  According to the output you showed above, this option was either missed
>>> or the distribution packaged it differently on install. What system is this
>>> on? What is the output of
>>>
>>> $ ls -l /usr/lib/mpich2/lib
>>>
>>> $ mpif90 -show
>>>
>>>
>>>> --datadir=/usr/share/mpich2 --mandir=/usr/share/man/mpich2
>>>> --docdir=/usr/share/mpich2/doc --htmldir=/usr/share/mpich2/doc
>>>> --with-hwloc-prefix=system --with-java=/etc/alternatives/java_sdk
>>>> FC=gfortran F77=gfortran CFLAGS=-m32 -O2 -fPIC CXXFLAGS=-m32 -O2 -fPIC
>>>> FCFLAGS=-m32 -O2 -fPIC FFLAGS=-m32 -O2 -fPIC LDFLAGS=-Wl,-z,noexecstack
>>>> MPICH2LIB_CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
>>>> -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables MPICH2LIB_CXXFLAGS=-O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables MPICH2LIB_FCFLAGS=-O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables MPICH2LIB_FFLAGS=-O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables
>>>> MPICH2 CC:     gcc -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables  -O2
>>>> MPICH2 CXX:     c++ -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables -O2
>>>> MPICH2 F77:     gfortran -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables -O2
>>>> MPICH2 FC:     gfortran -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>> --param=ssp-buffer-size=4  -m32 -march=i686 -mtune=atom
>>>> -fasynchronous-unwind-tables -O2
>>>>
>>>>
>>>> On Fri, Sep 14, 2012 at 7:31 PM, Jed Brown <jedbrown at mcs.anl.gov>wrote:
>>>>
>>>>> On Fri, Sep 14, 2012 at 6:23 PM, John Chludzinski <
>>>>> john.chludzinski at gmail.com> wrote:
>>>>>
>>>>>> Why is this installation of MPICH2 ("compiler wrapper") trying to
>>>>>> statically link against "mpichf90" and "mpich" ? Versus dynamically link
>>>>>> against the shared object files in the lib directory.
>>>>>>
>>>>>
>>>>> It's not trying to "statically link", it's just trying to link. The
>>>>> correct path is not being specified, but we'd have to see output of
>>>>> mpich2version to say for sure. It's a waste of time to speculate.
>>>>>
>>>>>
>>>>>>
>>>>>> How do I get the compiler wrapper to recognize this ?
>>>>>>
>>>>>> I assume I need to define: LD_LIBRARY_PATH=/usr/lib/mpich2/lib/ ?
>>>>>>
>>>>>
>>>>> This problem comes sooner.
>>>>>
>>>>> _______________________________________________
>>>>> mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
>>>>> To manage subscription options or unsubscribe:
>>>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
>>>> To manage subscription options or unsubscribe:
>>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>>
>>>>
>>>
>>> _______________________________________________
>>> mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
>>> To manage subscription options or unsubscribe:
>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>
>>>
>>
>> _______________________________________________
>> mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
>> To manage subscription options or unsubscribe:
>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>
>>
>
> _______________________________________________
> mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
> To manage subscription options or unsubscribe:
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/mpich-discuss/attachments/20120914/b5d67728/attachment-0001.html>


More information about the mpich-discuss mailing list