[mpich-discuss] Newbie getting started question?
John Chludzinski
john.chludzinski at gmail.com
Fri Sep 14 21:47:48 CDT 2012
*$ mpif90 -o ex1 ex1.f95*
/usr/bin/ld: warning: libopa.so.1, needed by
/usr/lib/mpich2/lib/libmpichf90.so, not found (try using -rpath or
-rpath-link)
/usr/bin/ld: warning: libmpl.so.1, needed by
/usr/lib/mpich2/lib/libmpichf90.so, not found (try using -rpath or
-rpath-link)
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trfree'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_env2str'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trlevel'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trvalid'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trmalloc'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trspace'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_env2range'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trcalloc'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_env2int'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trdump'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_env2bool'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trstrdup'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trrealloc'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_TrSetMaxMem'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trinit'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trDebugLevel'
/usr/lib/mpich2/lib/libmpich.so: undefined reference to `MPL_trid'
On Fri, Sep 14, 2012 at 10:37 PM, John Chludzinski <
john.chludzinski at gmail.com> wrote:
> Just ran: yum install mpich2-devel
>
> # ls -l /usr/lib/mpich2/lib/
> total 7484
>
> -rw-r--r--. 1 root root 25459 Jan 2 2012 clog2print.jar
> -rw-r--r--. 1 root root 127339 Jan 2 2012 clog2TOdrawable.jar
> -rw-r--r--. 1 root root 183747 Jan 2 2012 clog2TOslog2.jar
> -rw-r--r--. 1 root root 17400 Jan 2 2012 clogprint.jar
> -rw-r--r--. 1 root root 108290 Jan 2 2012 clogTOdrawable.jar
> -rw-r--r--. 1 root root 164701 Jan 2 2012 clogTOslog2.jar
> -rw-r--r--. 1 root root 2449314 Jan 2 2012 jumpshot.jar
> -rw-r--r--. 1 root root 7140 Jan 2 2012 jumpshot_launcher.jar
> -rw-r--r--. 1 root root 16278 Jan 2 2012 libampe.a
> lrwxrwxrwx. 1 root root 16 Sep 14 22:33 libfmpich.so ->
> libfmpich.so.3.3
>
> lrwxrwxrwx. 1 root root 16 Sep 14 16:20 libfmpich.so.3 ->
> libfmpich.so.3.3
> -rwxr-xr-x. 1 root root 121604 Jan 2 2012 libfmpich.so.3.3
> -rw-r--r--. 1 root root 271832 Jan 2 2012 liblmpe.a
> -rw-r--r--. 1 root root 237292 Jan 2 2012 libmpe.a
> -rw-r--r--. 1 root root 182660 Jan 2 2012 libmpe_collchk.a
> -rw-r--r--. 1 root root 36448 Jan 2 2012 libmpe_f2cmpi.a
> -rw-r--r--. 1 root root 219056 Jan 2 2012 libmpe_nompi.a
> -rw-r--r--. 1 root root 20776 Jan 2 2012 libmpe_nompi_null.a
> -rw-r--r--. 1 root root 10356 Jan 2 2012 libmpe_null.a
> lrwxrwxrwx. 1 root root 18 Sep 14 22:33 libmpichcxx.so ->
> libmpichcxx.so.3.3
>
> lrwxrwxrwx. 1 root root 18 Sep 14 16:20 libmpichcxx.so.3 ->
> libmpichcxx.so.3.3
> -rwxr-xr-x. 1 root root 116756 Jan 2 2012 libmpichcxx.so.3.3
> lrwxrwxrwx. 1 root root 18 Sep 14 22:33 libmpichf90.so ->
> libmpichf90.so.3.3
>
> lrwxrwxrwx. 1 root root 18 Sep 14 16:20 libmpichf90.so.3 ->
> libmpichf90.so.3.3
> -rwxr-xr-x. 1 root root 5644 Jan 2 2012 libmpichf90.so.3.3
> lrwxrwxrwx. 1 root root 15 Sep 14 22:33 libmpich.so -> libmpich.so.3.3
>
> lrwxrwxrwx. 1 root root 15 Sep 14 16:20 libmpich.so.3 ->
> libmpich.so.3.3
> -rwxr-xr-x. 1 root root 1861652 Jan 2 2012 libmpich.so.3.3
> lrwxrwxrwx. 1 root root 15 Sep 14 22:33 libmpl.so -> libmpl.so.1.1.0
>
> lrwxrwxrwx. 1 root root 15 Sep 14 16:20 libmpl.so.1 -> libmpl.so.1.1.0
> -rwxr-xr-x. 1 root root 15612 Jan 2 2012 libmpl.so.1.1.0
> lrwxrwxrwx. 1 root root 15 Sep 14 22:33 libopa.so -> libopa.so.1.0.0
>
> lrwxrwxrwx. 1 root root 15 Sep 14 16:20 libopa.so.1 -> libopa.so.1.0.0
> -rwxr-xr-x. 1 root root 3940 Jan 2 2012 libopa.so.1.0.0
> -rw-r--r--. 1 root root 86000 Jan 2 2012 libtmpe.a
>
> -rw-r--r--. 1 root root 265485 Jan 2 2012 logconvertor.jar
> -rw-r--r--. 1 root root 10760 Jan 2 2012 mpe_prof.o
> -rw-r--r--. 1 root root 173622 Jan 2 2012 slog2filter.jar
> -rw-r--r--. 1 root root 136084 Jan 2 2012 slog2navigator.jar
> -rw-r--r--. 1 root root 136091 Jan 2 2012 slog2printrecur.jar
> -rw-r--r--. 1 root root 136086 Jan 2 2012 slog2printserial.jar
> -rw-r--r--. 1 root root 261610 Jan 2 2012 slog2update205to206.jar
> -rw-r--r--. 1 root root 67742 Jan 2 2012 traceprint.jar
> drwxr-xr-x. 2 root root 4096 Sep 14 22:33 trace_rlog
>
> -rw-r--r--. 1 root root 124160 Jan 2 2012 traceTOslog2.jar
>
>
> On Fri, Sep 14, 2012 at 8:08 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:
>
>> This package is missing the symlinks libmpich.so -> libmpich.so.3.3. Is
>> there a separate mpich2-devel package?
>>
>> On Fri, Sep 14, 2012 at 6:57 PM, John Chludzinski <
>> john.chludzinski at gmail.com> wrote:
>>
>>> $ ls -l /usr/lib/mpich2/lib
>>> total 6412
>>> -rw-r--r--. 1 root root 25459 Jan 2 2012 clog2print.jar
>>> -rw-r--r--. 1 root root 127339 Jan 2 2012 clog2TOdrawable.jar
>>> -rw-r--r--. 1 root root 183747 Jan 2 2012 clog2TOslog2.jar
>>> -rw-r--r--. 1 root root 17400 Jan 2 2012 clogprint.jar
>>> -rw-r--r--. 1 root root 108290 Jan 2 2012 clogTOdrawable.jar
>>> -rw-r--r--. 1 root root 164701 Jan 2 2012 clogTOslog2.jar
>>> -rw-r--r--. 1 root root 2449314 Jan 2 2012 jumpshot.jar
>>> -rw-r--r--. 1 root root 7140 Jan 2 2012 jumpshot_launcher.jar
>>> lrwxrwxrwx. 1 root root 16 Sep 14 16:20 libfmpich.so.3 ->
>>> libfmpich.so.3.3
>>> -rwxr-xr-x. 1 root root 121604 Jan 2 2012 libfmpich.so.3.3
>>> lrwxrwxrwx. 1 root root 18 Sep 14 16:20 libmpichcxx.so.3 ->
>>> libmpichcxx.so.3.3
>>> -rwxr-xr-x. 1 root root 116756 Jan 2 2012 libmpichcxx.so.3.3
>>> lrwxrwxrwx. 1 root root 18 Sep 14 16:20 libmpichf90.so.3 ->
>>> libmpichf90.so.3.3
>>> -rwxr-xr-x. 1 root root 5644 Jan 2 2012 libmpichf90.so.3.3
>>> lrwxrwxrwx. 1 root root 15 Sep 14 16:20 libmpich.so.3 ->
>>> libmpich.so.3.3
>>> -rwxr-xr-x. 1 root root 1861652 Jan 2 2012 libmpich.so.3.3
>>> lrwxrwxrwx. 1 root root 15 Sep 14 16:20 libmpl.so.1 ->
>>> libmpl.so.1.1.0
>>> -rwxr-xr-x. 1 root root 15612 Jan 2 2012 libmpl.so.1.1.0
>>> lrwxrwxrwx. 1 root root 15 Sep 14 16:20 libopa.so.1 ->
>>> libopa.so.1.0.0
>>> -rwxr-xr-x. 1 root root 3940 Jan 2 2012 libopa.so.1.0.0
>>> -rw-r--r--. 1 root root 265485 Jan 2 2012 logconvertor.jar
>>> -rw-r--r--. 1 root root 10760 Jan 2 2012 mpe_prof.o
>>> -rw-r--r--. 1 root root 173622 Jan 2 2012 slog2filter.jar
>>> -rw-r--r--. 1 root root 136084 Jan 2 2012 slog2navigator.jar
>>> -rw-r--r--. 1 root root 136091 Jan 2 2012 slog2printrecur.jar
>>> -rw-r--r--. 1 root root 136086 Jan 2 2012 slog2printserial.jar
>>> -rw-r--r--. 1 root root 261610 Jan 2 2012 slog2update205to206.jar
>>> -rw-r--r--. 1 root root 67742 Jan 2 2012 traceprint.jar
>>> -rw-r--r--. 1 root root 124160 Jan 2 2012 traceTOslog2.jar
>>>
>>>
>>> $ mpif90 -show
>>> gfortran -m32 -O2 -fPIC -Wl,-z,noexecstack -I/usr/include/mpich2-i386
>>> -I/usr/include/mpich2-i386 -L/usr/lib/mpich2/lib -lmpichf90 -lmpichf90
>>> -lmpich
>>>
>>> On Fri, Sep 14, 2012 at 7:54 PM, Jed Brown <jedbrown at mcs.anl.gov> wrote:
>>>
>>>> On Fri, Sep 14, 2012 at 6:41 PM, John Chludzinski <
>>>> john.chludzinski at gmail.com> wrote:
>>>>
>>>>> MPICH2 Version: 1.4.1p1
>>>>> MPICH2 Release date: Thu Sep 1 13:53:02 CDT 2011
>>>>> MPICH2 Device: ch3:nemesis
>>>>> MPICH2 configure: --build=i386-redhat-linux-gnu
>>>>> --host=i386-redhat-linux-gnu --program-prefix=
>>>>> --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr
>>>>> --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc
>>>>> --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib
>>>>> --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib
>>>>> --mandir=/usr/share/man --infodir=/usr/share/info --enable-sharedlibs=gcc
>>>>> --enable-shared --enable-lib-depend --disable-rpath
>>>>
>>>>
>>>> Because of this option, you will need
>>>> LD_LIBRARY_PATH=/usr/lib/mpich2/lib to run executables.
>>>>
>>>>
>>>>> --enable-fc --with-device=ch3:nemesis --with-pm=hydra:gforker
>>>>> --sysconfdir=/etc/mpich2-i386 --includedir=/usr/include/mpich2-i386
>>>>> --bindir=/usr/lib/mpich2/bin --libdir=/usr/lib/mpich2/lib
>>>>
>>>>
>>>> According to the output you showed above, this option was either
>>>> missed or the distribution packaged it differently on install. What system
>>>> is this on? What is the output of
>>>>
>>>> $ ls -l /usr/lib/mpich2/lib
>>>>
>>>> $ mpif90 -show
>>>>
>>>>
>>>>> --datadir=/usr/share/mpich2 --mandir=/usr/share/man/mpich2
>>>>> --docdir=/usr/share/mpich2/doc --htmldir=/usr/share/mpich2/doc
>>>>> --with-hwloc-prefix=system --with-java=/etc/alternatives/java_sdk
>>>>> FC=gfortran F77=gfortran CFLAGS=-m32 -O2 -fPIC CXXFLAGS=-m32 -O2 -fPIC
>>>>> FCFLAGS=-m32 -O2 -fPIC FFLAGS=-m32 -O2 -fPIC LDFLAGS=-Wl,-z,noexecstack
>>>>> MPICH2LIB_CFLAGS=-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
>>>>> -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables MPICH2LIB_CXXFLAGS=-O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables MPICH2LIB_FCFLAGS=-O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables MPICH2LIB_FFLAGS=-O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables
>>>>> MPICH2 CC: gcc -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables -O2
>>>>> MPICH2 CXX: c++ -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables -O2
>>>>> MPICH2 F77: gfortran -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables -O2
>>>>> MPICH2 FC: gfortran -m32 -O2 -fPIC -O2 -g -pipe -Wall
>>>>> -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
>>>>> --param=ssp-buffer-size=4 -m32 -march=i686 -mtune=atom
>>>>> -fasynchronous-unwind-tables -O2
>>>>>
>>>>>
>>>>> On Fri, Sep 14, 2012 at 7:31 PM, Jed Brown <jedbrown at mcs.anl.gov>wrote:
>>>>>
>>>>>> On Fri, Sep 14, 2012 at 6:23 PM, John Chludzinski <
>>>>>> john.chludzinski at gmail.com> wrote:
>>>>>>
>>>>>>> Why is this installation of MPICH2 ("compiler wrapper") trying to
>>>>>>> statically link against "mpichf90" and "mpich" ? Versus dynamically link
>>>>>>> against the shared object files in the lib directory.
>>>>>>>
>>>>>>
>>>>>> It's not trying to "statically link", it's just trying to link. The
>>>>>> correct path is not being specified, but we'd have to see output of
>>>>>> mpich2version to say for sure. It's a waste of time to speculate.
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> How do I get the compiler wrapper to recognize this ?
>>>>>>>
>>>>>>> I assume I need to define: LD_LIBRARY_PATH=/usr/lib/mpich2/lib/ ?
>>>>>>>
>>>>>>
>>>>>> This problem comes sooner.
>>>>>>
>>>>>> _______________________________________________
>>>>>> mpich-discuss mailing list mpich-discuss at mcs.anl.gov
>>>>>> To manage subscription options or unsubscribe:
>>>>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>>>>
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> mpich-discuss mailing list mpich-discuss at mcs.anl.gov
>>>>> To manage subscription options or unsubscribe:
>>>>> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> mpich-discuss mailing list mpich-discuss at mcs.anl.gov
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>>>>
>>>>
>>>
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>>>
>>>
>>
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>>
>>
>
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