[mpich-discuss] Questions About using g95 to install MPICH2

[謝奇哲]

Thank you, Rajeev Thakur.

Sorry! I delayed to send this e-mail, because I had some other problems.

Before, I used the command.
User at 980622-05 /cygdrive/c/cygwin/mpich2-1.4
$./configure F77=g95 FC=g95 2>&1 | tee c.txt
The configuration completed, and saved in the file(c.txt).
How do you know configure step failed? Is the default hydra process manager not
suitable for cygwin?

And then I had trying to add --with-pm=smpd option, then I got other
problem.
Now, I used the command.
User at 980622-05 /cygdrive/c/cygwin/mpich2-1.4
$./configure F77=g95 FC=g95 --with-pm=smpd 2>&1 | tee c.txt

However, I still got the error.

configure: error: SMPD requires MD5 support, and configure could not find
either md5_calc in md5.h or MD5 in openssl/md5.h
configure: error: src/pm/smpd configure failed

2012/6/13 Rajeev Thakur <thakur at mcs.anl.gov>

> Your configure step failed. Can you try configuring without the
> --with-pm=smpd option. That will use the default hydra process manager.
>
> Rajeev
>
> On Jun 13, 2012, at 1:46 AM, 謝奇哲 wrote:
>
> >
> > Hi,
> >
> > I'm a new user about MPICH2, and using WindosXP, Cygwin and g95.
> > Then I install MPICH2-1.4 to my computers.
> > Using the command
> >
> > User at 980622-05 /cygdrive/c/cygwin/mpich2-1.4
> > $./configure F77=g95 FC=g95 2>&1 | tee c.txt
> >
> > User at 980622-05 /cygdrive/c/cygwin/mpich2-1.4
> > $make 2>&1 | tee m.txt
> >
> > User at 980622-05 /cygdrive/c/cygwin/mpich2-1.4
> > $make install 2>&1 | tee mi.txt
> >
> > User at 980622-05 /cygdrive/c/cygwin/mpich2-1.4
> > $PATH=/cygdrive/cygwin/usr/local/bin:$PATH ; export PATH
> >
> > The MPICH2 installed to the default location /usr/local/
> > And then I got errors message(saved in mtest.test), when I used command
> make testing in test file.
> > But I could run the cpi in examples file.
> > Can you give me some advices to solve the problem?
> > Thank you for your help
> >
> > Best regards,
> > Chi-Che Hsieh
> >
> >
> >
> >
> <mtest.txt><c.txt><config.log><m.txt><mi.txt>_______________________________________________
> > mpich-discuss mailing list     mpich-discuss at mcs.anl.gov
> > To manage subscription options or unsubscribe:
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
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Configuring MPICH2 version 1.4 with  'F77=g95' 'FC=g95' '--with-pm=smpd'
Running on system: CYGWIN_NT-5.1 980622-05 1.7.7(0.230/5/3) 2010-08-31 09:58 i686 Cygwin
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for grep that handles long lines and -e... /usr/bin/grep
checking for fgrep... /usr/bin/grep -F
Executing mpich2prereq in /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3 with 
Executing mpich2prereq in /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis
configure: ===== configuring src/mpl =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpl/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe
checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 8192
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format... func_convert_file_noop
checking how to convert i686-pc-cygwin file names to toolchain format... func_convert_file_noop
checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
checking for dlltool... dlltool
checking how to associate runtime and link libraries... func_cygming_dll_for_implib
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
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checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for variable argument list macro functionality... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
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checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
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checking ctype.h usability... yes
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checking for inttypes.h... (cached) yes
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checking valgrind.h usability... no
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checking whether __attribute__ allowed... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
config.status: include/mplconfig.h is unchanged
configure: ===== done with src/mpl configure =====
configure: ===== configuring src/openpa =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/openpa/configure --with-atomic-primitives=auto_allow_emulation 'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe
checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 8192
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format... func_convert_file_noop
checking how to convert i686-pc-cygwin file names to toolchain format... func_convert_file_noop
checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
checking for dlltool... dlltool
checking how to associate runtime and link libraries... func_cygming_dll_for_implib
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
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checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... no
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sched_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 4
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 primitives... yes
checking for support for gcc x86 primitives for pre-Pentium 4... yes
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
configure: ===== done with src/openpa configure =====
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/pm/smpd/mpich2prereq
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/pm/smpd/setup_pm
RUNNING SETUP FOR THE SMPD PROCESS MANAGER
RUNNING SETUP FOR THE SMPD SOCK INTERFACE
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak accepted but does not work (probably creates two non-weak entries)
no
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g95 accepts -g... yes
checking whether Fortran 77 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking how to get verbose linking output from g95... -v
checking for Fortran 77 libraries of g95...  -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1 -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/lib/gcc// -L/lib// -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/lib// -lf95 -lm -lws2_32 -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32
checking whether g95 accepts the FLIBS found by autoconf... yes
checking whether gcc links with FLIBS found by autoconf... yes
checking whether Fortran 77 and C objects are compatible... yes
checking for linker for Fortran main program... Use Fortran to link programs
checking for Fortran 77 name mangling... lower 2uscore
checking for egrep... /usr/bin/grep -E
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checking for libraries to link Fortran main with C stdio routines... none
checking whether Fortran init will work with C... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether g95 accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (g95    ) works... yes
checking whether the Fortran 90 compiler (g95    ) is a cross-compiler... no
checking whether Fortran 90 compiler works with Fortran 77 compiler... yes
checking whether Fortran 77 accepts ! for comments... yes
checking for include directory flag for Fortran... -I
checking for Fortran 77 flag for library directories... -L
checking whether Fortran 77 compiler processes .F files with C preprocessor... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether g95 accepts -g... (cached) yes
checking whether the Fortran 90 compiler (g95    ) works... yes
checking whether the Fortran 90 compiler (g95    ) is a cross-compiler... no
checking for Fortran 90 module extension... mod
checking for Fortran 90 module include flag... -I
checking whether Fortran 90 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes
checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none
checking for Fortran 90 compiler vendor... gnu
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether the C++ compiler c++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 3 . 4
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... ar
checking for ranlib... ranlib
checking for killall... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking whether install breaks libraries... no
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /usr/bin/bash
checking whether /usr/bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... four
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... four
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs.  MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 4
checking size of unsigned long... 4
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 12
checking size of void *... 4
checking for ANSI C header files... (cached) yes
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checking size of wchar_t... 2
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 8
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checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... no
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checking stdbool.h usability... yes
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checking complex.h usability... no
checking complex.h presence... no
checking for complex.h... no
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 24
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking for size of Fortran type integer... 4
checking for size of Fortran type real... 4
checking for size of Fortran type double precision... 8
checking whether integer*1 is supported... yes
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checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking whether real*4 is supported... yes
checking whether real*8 is supported... yes
checking whether real*16 is supported... yes
checking for C type matching Fortran integer... int
checking for size of MPI_Status... 20
checking for values of Fortran logicals... True is 1 and False is 0
checking for BSD/POSIX style global symbol lister... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for multiple __attribute__((alias)) support... yes
checking the minimum alignment of Fortran common block of 1 integers... 4
checking the minimum alignment of Fortran common block of 5 integers... 4, too small! reset to 32
checking for Fortran 90 integer kind for 4-byte integers... 4
checking for Fortran 90 integer kind for 8-byte integers... 8
checking if real*8 is supported in Fortran 90... yes
checking size of bool... 1
checking how to run the C++ preprocessor... c++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 24
checking if char * pointers use byte addresses... yes
checking for alignment restrictions on ... no
checking for alignment restrictions on int32_t... no
checking size of MPIR_Bsend_data_t... 56
checking for gcc __asm__ and pentium cmpxchgl instruction... yes
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
checking for gcc __asm__ and IA64 xchg4 instruction... no
checking for ANSI C header files... (cached) yes
checking stdlib.h usability... yes
checking stdlib.h presence... yes
checking for stdlib.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
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checking sys/types.h usability... yes
checking sys/types.h presence... yes
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checking string.h usability... yes
checking string.h presence... yes
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checking limits.h usability... yes
checking limits.h presence... yes
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checking errno.h usability... yes
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checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking whether strerror_r is declared... yes
checking for strerror_r... yes
checking whether strerror_r returns char *... yes
checking whether strerror_r needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for qsort... yes
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... yes
checking for clock_getres... yes
checking for gethrtime... no
checking for mach_absolute_time... no
checking for gettimeofday... yes
checking for library containing clock_gettime... none required
checking for library containing clock_getres... none required
checking whether struct timespec is defined in time.h... yes
checking for CLOCK_REALTIME defined in time.h... yes
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... no
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes
checking for thread local storage specifier... __thread
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... no
checking for sched_getaffinity... no
checking for bindprocessor... no
checking for thread_policy_set... no
configure: ===== configuring src/mpid/ch3 =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... no
checking whether we can use struct ifconf... yes
configure: ===== configuring channels/nemesis =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' '--disable-option-checking' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' --disable-option-checking
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for signal... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... yes
checking for mmap... yes
checking for munmap... yes
configure: Using a memory-mapped file for shared memory
checking whether struct hostent contains h_addr_list... yes
checking whether we can use struct ifconf... yes
checking knem_io.h usability... no
checking knem_io.h presence... no
checking for knem_io.h... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating nemesis/Makefile
config.status: creating nemesis/src/Makefile
config.status: creating nemesis/utils/Makefile
config.status: creating nemesis/utils/replacements/Makefile
config.status: creating nemesis/utils/monitor/Makefile
config.status: creating nemesis/netmod/Makefile
config.status: creating nemesis/netmod/elan/Makefile
config.status: creating nemesis/netmod/gm/Makefile
config.status: creating nemesis/netmod/mx/Makefile
config.status: creating nemesis/netmod/tcp/Makefile
config.status: creating nemesis/netmod/psm/Makefile
config.status: creating nemesis/netmod/newmad/Makefile
config.status: creating nemesis/netmod/none/Makefile
config.status: creating localdefs
config.status: creating nemesis/include/mpid_nem_net_module_defs.h
config.status: creating nemesis/src/mpid_nem_net_array.c
config.status: creating include/mpidi_ch3i_nemesis_conf.h
config.status: include/mpidi_ch3i_nemesis_conf.h is unchanged
configure: ===== done with channels/nemesis configure =====
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating channels/Makefile
config.status: creating util/ftb/Makefile
config.status: creating localdefs
config.status: creating include/mpid_thread.h
config.status: creating include/mpidi_ch3_conf.h
config.status: include/mpidi_ch3_conf.h is unchanged
config.status: executing default-1 commands
copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
configure: ===== done with src/mpid/ch3 configure =====
configure: ===== configuring src/pm/smpd/sock =====
RUNNING SETUP FOR THE SMPD SOCK INTERFACE
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pm/smpd/sock/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
RUNNING CONFIGURE FOR THE SMPD SOCK INTERFACE
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for strerror... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for ar... ar
checking for ranlib... ranlib
configure: ===== configuring poll =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pm/smpd/sock/poll/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' '--disable-option-checking' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' --disable-option-checking
RUNNING CONFIGURE FOR THE POLL IMPLEMENTATION OF SOCK
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for inline... inline
checking for poll... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking poll.h usability... yes
checking poll.h presence... yes
checking for poll.h... yes
checking for stdlib.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/poll.h usability... yes
checking sys/poll.h presence... yes
checking for sys/poll.h... yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking for unistd.h... (cached) yes
checking if struct poll is defined... yes
checking if a simple program using poll() can be compiled... yes
checking whether bit fields work in ip.h... no
Adding -D_NO_BITFIELDS to CFLAGS
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for library containing socket... none required
checking for library containing gethostbyname... none required
checking whether socklen_t is defined (in sys/socket.h if present)... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating smpdu_socki_conf.h
config.status: executing default-1 commands
configure: ===== done with poll configure =====
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating smpdu_sock_conf.h
configure: ===== done with src/pm/smpd/sock configure =====
configure: ===== configuring src/mpi/romio =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpi/romio/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
Configuring with args F77=g95 FC=g95 --with-pm=smpd --disable-option-checking
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for architecture... i686
configure: WARNING: Unknown architecture ... proceeding anyway
ROMIO home directory is /cygdrive/c/cygwin/mpich2-1.4/src/mpi/romio
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g95 accepts -g... yes
checking for memalign... yes
checking Fortran external names
Fortran externals are lower case and have two trailing underscores
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for sys/types.h... (cached) yes
checking for u_char... yes
checking for u_short... yes
checking for u_int... yes
checking for u_long... yes
checking sys/attr.h usability... no
checking sys/attr.h presence... no
checking for sys/attr.h... no
checking size of int... 4
checking size of void *... 4
checking for int large enough for pointers... yes
checking size of long long... 8
checking for extension for Fortran 90 programs... f90
checking for Fortran 90 KIND parameter for 8-byte integers...  8
checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
Overriding Array test for MPICH2
checking for weak symbol support... pragma weak
checking that weak symbols are visible to other files... no
no
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS.  See the Installation and
users manual for instructions on testing and if necessary fixing this
checking for library containing aio_write... no
checking for library containing pthread_create... none required
checking for library containing aio_write... (cached) no
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking if aio.h exists and can be compiled... no
checking if sys/aio.h exists and can be compiled... no
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking whether struct statfs properly defined... yes
checking for f_fstypename member of statfs structure... no
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stat... yes
checking for st_fstype member of stat structure... no
checking for sys/types.h... (cached) yes
checking for sys/statvfs.h... (cached) yes
checking for sys/vfs.h... (cached) yes
checking for statvfs... yes
checking for f_basetype member of statvfs structure... no
checking for unistd.h... (cached) yes
checking for large file defines... no
checking for strerror... yes
checking for doctext... false
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for lstat... yes
checking whether lstat needs a declaration... yes
checking for readlink... yes
checking whether readlink needs a declaration... no
checking for fsync... yes
checking whether fsync needs a declaration... no
checking for ftruncate... yes
checking whether ftruncate needs a declaration... no
checking for lseek64... no
checking for unistd.h... (cached) yes
checking for large file defines... none
checking spi/kernel_interface.h usability... no
checking spi/kernel_interface.h presence... no
checking for spi/kernel_interface.h... no
checking for Kernel_GetMemorySize... no
setting SYSDEP_INC to 
checking for C/C++ restrict keyword... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
setting CC to gcc
setting F77 to g95
setting TEST_CC to /cygdrive/c/cygwin/mpich2-1.4/bin/mpicc
setting TEST_F77 to /cygdrive/c/cygwin/mpich2-1.4/bin/mpif77
setting CFLAGS to    -O2  -DFORTRANDOUBLEUNDERSCORE -DHAVE_ROMIOCONF_H
setting USER_CFLAGS to 
setting USER_FFLAGS to 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi-io/Makefile
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating adio/common/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating adio/ad_nfs/Makefile
config.status: creating adio/ad_ufs/Makefile
config.status: creating adio/ad_bgl/Makefile
config.status: creating adio/ad_bglockless/Makefile
config.status: creating adio/ad_panfs/Makefile
config.status: creating adio/ad_xfs/Makefile
config.status: creating adio/ad_sfs/Makefile
config.status: creating adio/ad_pfs/Makefile
config.status: creating adio/ad_testfs/Makefile
config.status: creating adio/ad_pvfs/Makefile
config.status: creating adio/ad_pvfs2/Makefile
config.status: creating adio/ad_gridftp/Makefile
config.status: creating adio/ad_lustre/Makefile
config.status: creating adio/ad_zoidfs/Makefile
config.status: creating mpi-io/fortran/Makefile
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating mpi-io/glue/mpich2/Makefile
config.status: creating mpi-io/glue/mpich1/Makefile
config.status: creating mpi-io/glue/default/Makefile
config.status: creating common/dataloop/Makefile
config.status: creating adio/include/romioconf.h
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: ===== configuring src/pmi/smpd =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pmi/smpd/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
RUNNING CONFIGURE FOR THE SMPD PMI
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for unistd.h... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking mach-o/dyld.h usability... no
checking mach-o/dyld.h presence... no
checking for mach-o/dyld.h... no
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for dlopen... yes
checking for NSLinkModule... no
checking for library containing dlopen... none required
smpd_sock_name = poll
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating pmiconf.h
configure: ===== done with src/pmi/smpd configure =====
configure: ===== configuring src/pm/smpd =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pm/smpd/configure  'F77=g95' 'FC=g95' '--with-pm=smpd' --disable-option-checking
RUNNING CONFIGURE FOR THE SMPD PM
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for sys/types.h... (cached) yes
checking sys/wait.h usability... yes
checking sys/wait.h presence... yes
checking for sys/wait.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/stat.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking math.h usability... yes
checking math.h presence... yes
checking for math.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking termios.h usability... yes
checking termios.h presence... yes
checking for termios.h... yes
checking for string.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking md5.h usability... no
checking md5.h presence... no
checking for md5.h... no
checking openssl/md5.h usability... no
checking openssl/md5.h presence... no
checking for openssl/md5.h... no
checking for sigaction... yes
checking for usleep... yes
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for setenv... yes
checking for md5_calc... no
checking for library containing uuid_generate... -luuid
checking for poll stdin capability... yes
checking for library containing MD5... no
checking for MD5... no
checking for library containing md5_calc... no
checking for md5_calc function... no
configure: error: SMPD requires MD5 support, and configure could not find either md5_calc in md5.h or MD5 in openssl/md5.h
configure: error: src/pm/smpd configure failed
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Configuring MPICH2 version 1.4 with  'F77=g95' 'FC=g95'
Running on system: CYGWIN_NT-5.1 980622-05 1.7.7(0.230/5/3) 2010-08-31 09:58 i686 Cygwin
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for grep that handles long lines and -e... /usr/bin/grep
checking for fgrep... /usr/bin/grep -F
Executing mpich2prereq in /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3 with 
Executing mpich2prereq in /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis
configure: ===== configuring src/mpl =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpl/configure  'F77=g95' 'FC=g95' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe
checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 8192
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format... func_convert_file_noop
checking how to convert i686-pc-cygwin file names to toolchain format... func_convert_file_noop
checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
checking for dlltool... dlltool
checking how to associate runtime and link libraries... func_cygming_dll_for_implib
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for variable argument list macro functionality... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
checking for memcheck.h... no
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking helgrind.h usability... no
checking helgrind.h presence... no
checking for helgrind.h... no
checking valgrind/helgrind.h usability... no
checking valgrind/helgrind.h presence... no
checking for valgrind/helgrind.h... no
checking drd.h usability... no
checking drd.h presence... no
checking for drd.h... no
checking valgrind/drd.h usability... no
checking valgrind/drd.h presence... no
checking for valgrind/drd.h... no
checking whether the valgrind headers are broken or too old... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncmp... yes
checking whether strncmp needs a declaration... no
checking for putenv... yes
checking whether putenv needs a declaration... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
config.status: include/mplconfig.h is unchanged
configure: ===== done with src/mpl configure =====
configure: ===== configuring src/openpa =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/openpa/configure --with-atomic-primitives=auto_allow_emulation 'F77=g95' 'FC=g95' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking how to print strings... printf
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe
checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 8192
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format... func_convert_file_noop
checking how to convert i686-pc-cygwin file names to toolchain format... func_convert_file_noop
checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
checking for dlltool... dlltool
checking how to associate runtime and link libraries... func_cygming_dll_for_implib
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... no
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sched_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 4
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 primitives... yes
checking for support for gcc x86 primitives for pre-Pentium 4... yes
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
configure: ===== done with src/openpa configure =====
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/pm/hydra/mpich2prereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak accepted but does not work (probably creates two non-weak entries)
no
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g95 accepts -g... yes
checking whether Fortran 77 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking how to get verbose linking output from g95... -v
checking for Fortran 77 libraries of g95...  -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1 -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/lib/gcc// -L/lib// -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/lib// -lf95 -lm -lws2_32 -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32
checking whether g95 accepts the FLIBS found by autoconf... yes
checking whether gcc links with FLIBS found by autoconf... yes
checking whether Fortran 77 and C objects are compatible... yes
checking for linker for Fortran main program... Use Fortran to link programs
checking for Fortran 77 name mangling... lower 2uscore
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for libraries to link Fortran main with C stdio routines... none
checking whether Fortran init will work with C... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether g95 accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (g95    ) works... yes
checking whether the Fortran 90 compiler (g95    ) is a cross-compiler... no
checking whether Fortran 90 compiler works with Fortran 77 compiler... yes
checking whether Fortran 77 accepts ! for comments... yes
checking for include directory flag for Fortran... -I
checking for Fortran 77 flag for library directories... -L
checking whether Fortran 77 compiler processes .F files with C preprocessor... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether g95 accepts -g... (cached) yes
checking whether the Fortran 90 compiler (g95    ) works... yes
checking whether the Fortran 90 compiler (g95    ) is a cross-compiler... no
checking for Fortran 90 module extension... mod
checking for Fortran 90 module include flag... -I
checking whether Fortran 90 compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes
checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none
checking for Fortran 90 compiler vendor... gnu
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking whether the C++ compiler c++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 3 . 4
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... ar
checking for ranlib... ranlib
checking for killall... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking whether install breaks libraries... no
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /usr/bin/bash
checking whether /usr/bin/bash supports arrays... yes
checking for doctext... false
checking for location of doctext style files... unavailable
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
Using gcc to determine dependencies
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... four
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... four
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs.  MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 4
checking size of unsigned long... 4
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 12
checking size of void *... 4
checking for ANSI C header files... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 2
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 8
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... no
checking sys/bitypes.h presence... no
checking for sys/bitypes.h... no
checking inttypes.h usability... yes
checking inttypes.h presence... yes
checking for inttypes.h... yes
checking stdint.h usability... yes
checking stdint.h presence... yes
checking for stdint.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking complex.h usability... no
checking complex.h presence... no
checking for complex.h... no
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 24
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking for size of Fortran type integer... 4
checking for size of Fortran type real... 4
checking for size of Fortran type double precision... 8
checking whether integer*1 is supported... yes
checking whether integer*2 is supported... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking whether real*4 is supported... yes
checking whether real*8 is supported... yes
checking whether real*16 is supported... yes
checking for C type matching Fortran integer... int
checking for size of MPI_Status... 20
checking for values of Fortran logicals... True is 1 and False is 0
checking for BSD/POSIX style global symbol lister... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for multiple __attribute__((alias)) support... yes
checking the minimum alignment of Fortran common block of 1 integers... 4
checking the minimum alignment of Fortran common block of 5 integers... 4, too small! reset to 32
checking for Fortran 90 integer kind for 4-byte integers... 4
checking for Fortran 90 integer kind for 8-byte integers... 8
checking if real*8 is supported in Fortran 90... yes
checking size of bool... 1
checking how to run the C++ preprocessor... c++ -E
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 24
checking if char * pointers use byte addresses... yes
checking for alignment restrictions on ... no
checking for alignment restrictions on int32_t... no
checking size of MPIR_Bsend_data_t... 56
checking for gcc __asm__ and pentium cmpxchgl instruction... yes
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
checking for gcc __asm__ and IA64 xchg4 instruction... no
checking for ANSI C header files... (cached) yes
checking stdlib.h usability... yes
checking stdlib.h presence... yes
checking for stdlib.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/types.h usability... yes
checking sys/types.h presence... yes
checking for sys/types.h... yes
checking string.h usability... yes
checking string.h presence... yes
checking for string.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking unistd.h usability... yes
checking unistd.h presence... yes
checking for unistd.h... yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking whether strerror_r is declared... yes
checking for strerror_r... yes
checking whether strerror_r returns char *... yes
checking whether strerror_r needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for qsort... yes
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... yes
checking for clock_getres... yes
checking for gethrtime... no
checking for mach_absolute_time... no
checking for gettimeofday... yes
checking for library containing clock_gettime... none required
checking for library containing clock_getres... none required
checking whether struct timespec is defined in time.h... yes
checking for CLOCK_REALTIME defined in time.h... yes
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/setup_device
RUNNING SETUP_DEVICE FOR THE CH3 DEVICE
sourcing /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/setup_channel
RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... no
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes
checking for thread local storage specifier... __thread
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking for getpid... yes
checking for sched_setaffinity... no
checking for sched_getaffinity... no
checking for bindprocessor... no
checking for thread_policy_set... no
configure: ===== configuring src/mpid/ch3 =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/configure  'F77=g95' 'FC=g95' --disable-option-checking
RUNNING CONFIGURE FOR CH3 DEVICE
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking uuid/uuid.h usability... yes
checking uuid/uuid.h presence... yes
checking for uuid/uuid.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... no
checking whether we can use struct ifconf... yes
configure: ===== configuring channels/nemesis =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/configure  'F77=g95' 'FC=g95' '--disable-option-checking' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' --disable-option-checking
RUNNING CONFIGURE FOR THE NEMESIS CHANNEL
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for pid_t... yes
checking for net/if.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for unistd.h... (cached) yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for signal... yes
checking for mkstemp... yes
checking for rand... yes
checking for srand... yes
checking for OpenPA atomic primitive availability... yes
checking for mmap... yes
checking for munmap... yes
configure: Using a memory-mapped file for shared memory
checking whether struct hostent contains h_addr_list... yes
checking whether we can use struct ifconf... yes
checking knem_io.h usability... no
checking knem_io.h presence... no
checking for knem_io.h... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating nemesis/Makefile
config.status: creating nemesis/src/Makefile
config.status: creating nemesis/utils/Makefile
config.status: creating nemesis/utils/replacements/Makefile
config.status: creating nemesis/utils/monitor/Makefile
config.status: creating nemesis/netmod/Makefile
config.status: creating nemesis/netmod/elan/Makefile
config.status: creating nemesis/netmod/gm/Makefile
config.status: creating nemesis/netmod/mx/Makefile
config.status: creating nemesis/netmod/tcp/Makefile
config.status: creating nemesis/netmod/psm/Makefile
config.status: creating nemesis/netmod/newmad/Makefile
config.status: creating nemesis/netmod/none/Makefile
config.status: creating localdefs
config.status: creating nemesis/include/mpid_nem_net_module_defs.h
config.status: creating nemesis/src/mpid_nem_net_array.c
config.status: creating include/mpidi_ch3i_nemesis_conf.h
config.status: include/mpidi_ch3i_nemesis_conf.h is unchanged
configure: ===== done with channels/nemesis configure =====
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating util/Makefile
config.status: creating channels/Makefile
config.status: creating util/ftb/Makefile
config.status: creating localdefs
config.status: creating include/mpid_thread.h
config.status: creating include/mpidi_ch3_conf.h
config.status: include/mpidi_ch3_conf.h is unchanged
config.status: executing default-1 commands
copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c
configure: ===== done with src/mpid/ch3 configure =====
configure: ===== configuring src/mpi/romio =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpi/romio/configure  'F77=g95' 'FC=g95' --disable-option-checking
Configuring with args F77=g95 FC=g95 --disable-option-checking
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for architecture... i686
configure: WARNING: Unknown architecture ... proceeding anyway
ROMIO home directory is /cygdrive/c/cygwin/mpich2-1.4/src/mpi/romio
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g95 accepts -g... yes
checking for memalign... yes
checking Fortran external names
Fortran externals are lower case and have two trailing underscores
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for sys/types.h... (cached) yes
checking for u_char... yes
checking for u_short... yes
checking for u_int... yes
checking for u_long... yes
checking sys/attr.h usability... no
checking sys/attr.h presence... no
checking for sys/attr.h... no
checking size of int... 4
checking size of void *... 4
checking for int large enough for pointers... yes
checking size of long long... 8
checking for extension for Fortran 90 programs... f90
checking for Fortran 90 KIND parameter for 8-byte integers...  8
checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes
Overriding Array test for MPICH2
checking for weak symbol support... pragma weak
checking that weak symbols are visible to other files... no
no
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS.  See the Installation and
users manual for instructions on testing and if necessary fixing this
checking for library containing aio_write... no
checking for library containing pthread_create... none required
checking for library containing aio_write... (cached) no
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking if aio.h exists and can be compiled... no
checking if sys/aio.h exists and can be compiled... no
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking whether struct statfs properly defined... yes
checking for f_fstypename member of statfs structure... no
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stat... yes
checking for st_fstype member of stat structure... no
checking for sys/types.h... (cached) yes
checking for sys/statvfs.h... (cached) yes
checking for sys/vfs.h... (cached) yes
checking for statvfs... yes
checking for f_basetype member of statvfs structure... no
checking for unistd.h... (cached) yes
checking for large file defines... no
checking for strerror... yes
checking for doctext... false
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for lstat... yes
checking whether lstat needs a declaration... yes
checking for readlink... yes
checking whether readlink needs a declaration... no
checking for fsync... yes
checking whether fsync needs a declaration... no
checking for ftruncate... yes
checking whether ftruncate needs a declaration... no
checking for lseek64... no
checking for unistd.h... (cached) yes
checking for large file defines... none
checking spi/kernel_interface.h usability... no
checking spi/kernel_interface.h presence... no
checking for spi/kernel_interface.h... no
checking for Kernel_GetMemorySize... no
setting SYSDEP_INC to 
checking for C/C++ restrict keyword... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
setting CC to gcc
setting F77 to g95
setting TEST_CC to /cygdrive/c/cygwin/mpich2-1.4/bin/mpicc
setting TEST_F77 to /cygdrive/c/cygwin/mpich2-1.4/bin/mpif77
setting CFLAGS to    -O2  -DFORTRANDOUBLEUNDERSCORE -DHAVE_ROMIOCONF_H
setting USER_CFLAGS to 
setting USER_FFLAGS to 
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi-io/Makefile
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating adio/common/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating adio/ad_nfs/Makefile
config.status: creating adio/ad_ufs/Makefile
config.status: creating adio/ad_bgl/Makefile
config.status: creating adio/ad_bglockless/Makefile
config.status: creating adio/ad_panfs/Makefile
config.status: creating adio/ad_xfs/Makefile
config.status: creating adio/ad_sfs/Makefile
config.status: creating adio/ad_pfs/Makefile
config.status: creating adio/ad_testfs/Makefile
config.status: creating adio/ad_pvfs/Makefile
config.status: creating adio/ad_pvfs2/Makefile
config.status: creating adio/ad_gridftp/Makefile
config.status: creating adio/ad_lustre/Makefile
config.status: creating adio/ad_zoidfs/Makefile
config.status: creating mpi-io/fortran/Makefile
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating mpi-io/glue/mpich2/Makefile
config.status: creating mpi-io/glue/mpich1/Makefile
config.status: creating mpi-io/glue/default/Makefile
config.status: creating common/dataloop/Makefile
config.status: creating adio/include/romioconf.h
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: ===== configuring src/pmi/simple =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pmi/simple/configure  'F77=g95' 'FC=g95' --disable-option-checking
RUNNING CONFIGURE FOR THE SIMPLE PMI
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for strings.h... (cached) yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncasecmp... yes
checking for sys/types.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/socket.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for library containing socket... none required
checking for library containing gethostbyname... none required
checking for socket... yes
checking for setsockopt... yes
checking for gethostbyname... yes
checking whether socklen_t is defined (in sys/socket.h if present)... yes
checking whether struct hostent contains h_addr_list... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating pmiconf.h
config.status: pmiconf.h is unchanged
configure: ===== done with src/pmi/simple configure =====
configure: ===== configuring src/pm/hydra =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pm/hydra/configure  'F77=g95' 'FC=g95' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for grep that handles long lines and -e... /usr/bin/grep
checking for fgrep... /usr/bin/grep -F
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of unsigned long... 4
checking for size_t... yes
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe
checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 8192
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format... func_convert_file_noop
checking how to convert i686-pc-cygwin file names to toolchain format... func_convert_file_noop
checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
checking for dlltool... dlltool
checking how to associate runtime and link libraries... func_cygming_dll_for_implib
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes
checking whether -lc should be explicitly linked in... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for variable argument list macro functionality... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking for doxygen... no
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checking stdarg.h usability... yes
checking stdarg.h presence... yes
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checking for sys/types.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
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checking sched.h usability... yes
checking sched.h presence... yes
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checking for sys/stat.h... (cached) yes
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checking sys/param.h presence... yes
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checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
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checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
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checking sys/un.h usability... yes
checking sys/un.h presence... yes
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checking netdb.h usability... yes
checking netdb.h presence... yes
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checking sys/time.h usability... yes
checking sys/time.h presence... yes
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checking time.h usability... yes
checking time.h presence... yes
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checking ifaddrs.h usability... yes
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checking arpa/inet.h usability... yes
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checking errno.h usability... yes
checking errno.h presence... yes
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checking poll.h usability... yes
checking poll.h presence... yes
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checking fcntl.h usability... yes
checking fcntl.h presence... yes
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checking for netdb.h... (cached) yes
checking winsock2.h usability... no
checking winsock2.h presence... yes
configure: WARNING: winsock2.h: present but cannot be compiled
configure: WARNING: winsock2.h:     check for missing prerequisite headers?
configure: WARNING: winsock2.h: see the Autoconf documentation
configure: WARNING: winsock2.h:     section "Present But Cannot Be Compiled"
configure: WARNING: winsock2.h: proceeding with the compiler's result
checking for winsock2.h... no
checking windows.h usability... yes
checking windows.h presence... yes
checking for windows.h... yes
checking for socket in -lsocket... no
checking for gethostbyname in -lnsl... no
checking for gettimeofday... yes
checking for time... yes
checking for strdup... yes
checking for sigaction... yes
checking for signal... yes
checking for usleep... yes
checking for alloca... no
checking for unsetenv... yes
checking for strerror... yes
checking for strsignal... yes
checking for stat... yes
checking for getifaddrs... yes
checking for fcntl... yes
checking for alarm... yes
checking for isatty... yes
checking for inet_ntop... yes
checking for environ in unistd.h... yes
checking bootstrap server... ssh,rsh,fork,slurm,ll,lsf,sge,pbs,none,persist
checking process manager... pmiserv
checking user interface... mpich
checking desired process binding libraries... hwloc,plpa
configure: ===== configuring tools/bind/hwloc/hwloc =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pm/hydra/tools/bind/hwloc/hwloc/configure --enable-embedded-mode 'F77=g95' 'FC=g95' '--disable-option-checking' 'CC=gcc' 'CFLAGS=   -O2 ' 'LDFLAGS=' 'LDFLAGS= ' 'LIBS=' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' --disable-option-checking

###
### Configuring hwloc distribution tarball
### Startup tests
###
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking target system type... i686-pc-cygwin
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking for hwloc version... 1.2rc3-1
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes

###
### Configuring hwloc core
###
checking hwloc building mode... embedded
configure: hwloc builddir: /cygdrive/c/cygwin/mpich2-1.4/src/pm/hydra/tools/bind/hwloc/hwloc
configure: hwloc srcdir: /cygdrive/c/cygwin/mpich2-1.4/src/pm/hydra/tools/bind/hwloc/hwloc
checking if want hwloc maintainer support... disabled (embedded mode)
checking for hwloc directory prefix... (none)
checking for hwloc symbol prefix... hwloc_
checking size of void *... 4
checking which OS support to include... Windows
checking which CPU support to include... x86_32
checking size of unsigned long... 4
checking size of unsigned int... 4
checking for __attribute__... yes
checking for __attribute__(aligned)... yes
checking for __attribute__(always_inline)... yes
checking for __attribute__(cold)... yes
checking for __attribute__(const)... yes
checking for __attribute__(deprecated)... yes
checking for __attribute__(format)... no
checking for __attribute__(hot)... yes
checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(nonnull)... no
checking for __attribute__(noreturn)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... no
checking for __attribute__(unused)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking whether to enable visibility... no (disabled)
checking for inline compatibility keyword... __inline__
checking for strncasecmp... yes
checking whether function strncasecmp is declared... yes
checking for strftime... yes
checking for setlocale... yes
checking for stdint.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking for KAFFINITY... no
checking for PROCESSOR_CACHE_TYPE... no
checking for CACHE_DESCRIPTOR... no
checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
checking for RelationProcessorPackage... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
checking for GROUP_AFFINITY... no
checking for PROCESSOR_RELATIONSHIP... no
checking for NUMA_NODE_RELATIONSHIP... no
checking for CACHE_RELATIONSHIP... no
checking for PROCESSOR_GROUP_INFO... no
checking for GROUP_RELATIONSHIP... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
checking for PSAPI_WORKING_SET_EX_BLOCK... no
checking for PSAPI_WORKING_SET_EX_INFORMATION... no
checking for main in -lgdi32... yes
checking windows.h usability... yes
checking windows.h presence... yes
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checking sys/lgrp_user.h usability... no
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checking for sys/lgrp_user.h... no
checking kstat.h usability... no
checking kstat.h presence... no
checking for kstat.h... no
checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
checking whether _SC_NPROC_ONLN is declared... no
checking whether _SC_NPROC_CONF is declared... no
checking whether _SC_LARGE_PAGESIZE is declared... no
checking mach/mach_host.h usability... no
checking mach/mach_host.h presence... no
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checking mach/mach_init.h usability... no
checking mach/mach_init.h presence... no
checking for mach/mach_init.h... no
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/sysctl.h... no
checking for sysctl... no
checking for sysctlbyname... no
checking whether function sched_setaffinity is declared... no
checking for working CPU_SET... no
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checking for working _syscall3... no
checking for KERRIGHED... no
checking for lib... no
checking for bash... /usr/bin/sh
checking for ffs... yes
checking whether function ffs is declared... yes
checking for ffsl... no
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checking for openat... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for getpagesize... yes
checking for memalign... yes
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checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
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checking for uname... yes
checking numaif.h usability... no
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checking pthread_np.h usability... no
checking pthread_np.h presence... no
checking for pthread_np.h... no
checking whether pthread_setaffinity_np is declared... no
checking whether pthread_getaffinity_np is declared... no
checking for sched_setaffinity... no
checking for sys/cpuset.h... no
checking for library containing pthread_getthrds_np... no
checking for XML... no
checking for cpuid... yes
checking for X... libraries , headers 
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/i686-pc-cygwin/bin/ld.exe
checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 8192
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format... func_convert_file_noop
checking how to convert i686-pc-cygwin file names to toolchain format... func_convert_file_noop
checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
checking for dlltool... dlltool
checking how to associate runtime and link libraries... func_cygming_dll_for_implib
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for as... as
checking for dlltool... (cached) dlltool
checking for objdump... (cached) objdump
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries... yes
checking whether -lc should be explicitly linked in... yes
checking dynamic linker characteristics... Win32 ld.exe
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating src/Makefile
config.status: creating include/private/autogen/config.h
config.status: include/private/autogen/config.h is unchanged
config.status: creating include/hwloc/autogen/config.h
config.status: include/hwloc/autogen/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with tools/bind/hwloc/hwloc configure =====
configure: ===== configuring tools/bind/plpa/plpa =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/pm/hydra/tools/bind/plpa/plpa/configure --enable-included-mode 'F77=g95' 'FC=g95' '--disable-option-checking' 'CC=gcc' 'CFLAGS=   -O2 ' 'LDFLAGS=' 'LDFLAGS= ' 'LIBS=' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' --disable-option-checking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for PLPA version... 1.3.2
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether gcc and cc understand -c and -o together... yes
checking whether to enable "picky" compiler mode... no (default)
checking for flex... no
checking for lex... no
checking for bison... no
checking for byacc... no
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for syscall... no
configure: error: Cannot continue
configure: ===== done with tools/bind/plpa/plpa configure =====
checking available process binding libraries... 
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking checkpointing library... none
checking demux engine... poll,select,port
checking for poll... yes
checking for select... yes
checking debugging support... none
checking error checking... yes
checking warnings... no
checking profiling... yes
checking libftb.h usability... no
checking libftb.h presence... no
checking for libftb.h... no
checking for FTB_Connect in -lftb... no
checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... no
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with src/pm/hydra configure =====
configure: ===== configuring src/mpe2 =====
configure: executing: /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/configure  'F77=g95' 'FC=g95' --disable-option-checking
Configuring MPE Profiling System with  'F77=g95' 'FC=g95' '--disable-option-checking' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
This MPE build is part of the MPICH2 build
checking for leftover Makefiles in subpackages ...  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" cleaned 
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether MPI_CC has been set ... /cygdrive/c/cygwin/mpich2-1.4/bin/mpicc 
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g95 accepts -g... yes
checking whether MPI_F77 has been set ... /cygdrive/c/cygwin/mpich2-1.4/bin/mpif77 
checking how to get verbose linking output from g95... -v
checking for Fortran 77 libraries of g95...  -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1 -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/lib/gcc// -L/lib// -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/lib// -lpthread -lf95 -lm -lws2_32 -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32
checking whether g95 accepts the FLIBS found by autoconf... yes
checking whether C can link with  -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1 -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/lib/gcc// -L/lib// -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/lib// -lpthread -lf95 -lm -lws2_32 -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32... yes
checking for linker for Fortran main programs... Use Fortran to link programs
checking whether Fortran 77 and C objects are compatible... yes
checking for Fortran 77 name mangling... lower doubleunderscore
checking what libraries are needed to link Fortran programs with C routines that use stdio... none
checking for Fortran 77 flag for library directories... -L
checking for include directory flag for Fortran... -I
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ranlib... ranlib
checking whether install breaks libraries... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/mpetestlink
config.status: creating sbin/mpetestexec
config.status: creating sbin/mpetestexeclog
config.status: creating sbin/mpeinstall
config.status: creating sbin/mpecheckinstall
config.status: WARNING:  'sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting
config.status: creating sbin/mpecheckbuild
config.status: creating etc/mpe_help.conf
config.status: creating etc/mpe_f77env.conf
config.status: creating mpe_conf.h
config.status: executing default-1 commands
=== configuring in src/misc (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/misc)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Miscellaneous Library with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/misc
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for dbx... no
checking for gdb... no
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sysinfo... no
checking for uname... yes
checking for gethostbyname... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/systeminfo.h usability... no
checking sys/systeminfo.h presence... no
checking for sys/systeminfo.h... no
checking for sys/types.h... (cached) yes
checking for sighandler_t... yes
checking for kill... yes
checking whether kill needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/dbxerr.c
config.status: creating mpe_misc_conf.h
=== configuring in src/callstack (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/callstack)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE CallStack Library with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/callstack
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking execinfo.h usability... no
checking execinfo.h presence... no
checking for execinfo.h... no
checking ucontext.h usability... no
checking ucontext.h presence... no
checking for ucontext.h... no
checking for fdopen... yes
checking whether fdopen needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/mpe_callstack.h
config.status: creating etc/mpe_callstack_ldflags.conf
config.status: creating bin/bt2line
config.status: creating mpe_callstack_conf.h
config.status: executing default-1 commands
=== configuring in src/logging (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/logging)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Logging Library and Tools with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/logging
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking sys/bitypes.h usability... no
checking sys/bitypes.h presence... no
checking for sys/bitypes.h... no
checking for sys/stat.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for header that defines C99 integer types, intXX_t ... <stdint.h> 
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines the PRIdXX macros ... yes
checking if <stdint.h> can be behind system headers ... yes
checking size of void *... 4
checking for address-sized integer ... CLOG_int32_t
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for srand48... yes
checking whether srand48 needs a declaration... no
checking for lrand48... yes
checking whether lrand48 needs a declaration... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for O_LARGEFILE for open() ... no
checking for O_BINARY for open() ... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_mutex_lock in -lpthread... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/clog_inttypes.h
config.status: creating include/mpi_null.h
config.status: creating include/mpe_log_thread.h
config.status: creating etc/mpe_log.conf
config.status: creating etc/mpe_nolog.conf
config.status: creating etc/mpe_log_postlib.conf
config.status: creating mpe_logging_conf.h
=== configuring in src/wrappers (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/wrappers)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Wrapper Libraries For MPI with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/wrappers
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdarg is correct... yes
checking if compiler accepts prototypes ... yes
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for safe PMPI invocations ... no
checking for the value of MPI_STATUS_SIZE ... 5
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_f77env.conf
config.status: creating etc/mpe_mpilog.conf
config.status: creating etc/mpe_mpitrace.conf
config.status: creating mpe_wrappers_conf.h
=== configuring in src/graphics (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/graphics)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE X Graphics Library with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/graphics
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for X... libraries , headers 
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void *... 4
checking for long pointer... no
checking for system... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating contrib/life/Makefile
config.status: creating contrib/mandel/Makefile
config.status: creating contrib/mastermind/Makefile
config.status: creating contrib/test/Makefile
config.status: creating etc/mpe_mpianim.conf
config.status: creating etc/mpe_graphics.conf
config.status: creating mpe_graphics_conf.h
=== configuring in src/collchk (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/collchk)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
Configuring MPE Collective and Datatype Checking Library with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/collchk
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_mpicheck.conf
config.status: creating mpe_collchk_conf.h
=== configuring in src/slog2sdk (/cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/slog2sdk)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' --cache-file=/dev/null --srcdir=.
checking for current directory name... /cygdrive/c/cygwin/mpich2-1.4/src/mpe2/src/slog2sdk
Configuring SLOG2SDK with  '--disable-option-checking' '--prefix=/usr/local' 'F77=g95' 'FC=g95' 'MPI_CC=/cygdrive/c/cygwin/mpich2-1.4/bin/mpicc' 'MPI_F77=/cygdrive/c/cygwin/mpich2-1.4/bin/mpif77' 'CC=gcc' 'CFLAGS=   -O2' 'LDFLAGS= ' 'LIBS=-lpthread  ' 'CPPFLAGS= -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpl/include -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/openpa/src -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/datatype -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/common/locks -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/include -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers -I/cygdrive/c/cygwin/mpich2-1.4/src/util/wrappers' 'FFLAGS=  -O2' '--cache-file=/dev/null' '--srcdir=.'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking if CLASSPATH is set... no, good to go
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for java in user's PATH... found /cygdrive/c/WINDOWS/java
checking if /cygdrive/c/WINDOWS/java runs simple java class... no
checking for java in user's PATH... not found
configure: WARNING:  No Java Virtual Machine can be found anywhere! 
MPE2:  "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" have been configured
configure: ===== done with src/mpe2 configure =====
checking size of OPA_ptr_t... 4
checking the sizeof MPI_Offset... 8
checking whether the Fortran Offset type works with Fortran 77... yes
checking whether the Fortran Offset type works with Fortran 90... yes
Running Configure for Fortran 90 Type routines
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for fgrep... /usr/bin/grep -F
checking for an ANSI C-conforming const... yes
checking whether we are using the GNU Fortran compiler... yes
checking whether g95 accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking for the precision and range of reals...  6 , 37
checking for the precision and range of double precision...  15 , 307
checking for the range of integer...  9
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g95 accepts -g... yes
checking how to get verbose linking output from g95... -v
checking for Fortran 77 libraries of g95...  -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1 -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/lib/gcc// -L/lib// -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/lib// -lpthread -lf95 -lm -lws2_32 -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32
checking for linker for Fortran main program... Use Fortran to link programs
checking for Fortran 77 name mangling... lower 2uscore
checking for available integer kinds...  2 , 1, 4 , 2, 9 , 4, 18 , 8,
checking for available integer ranges...  {  2 , 1 , 1 }, {  4 , 2 , 2 }, {  9 , 4 , 4 }, {  18 , 8 , 8 },
configure: creating ./config.status
config.status: creating mpif90model.h
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/mpich2info.h
config.status: creating mpich2-doxygen
config.status: creating src/include/mpichtimer.h
config.status: creating src/binding/Makefile
config.status: creating src/binding/cxx/Makefile
config.status: creating src/binding/cxx/mpicxx.h
config.status: creating src/binding/f77/Makefile
config.status: creating src/binding/f77/mpif.h
config.status: creating src/binding/f77/setbotf.f
config.status: creating src/binding/f77/setbot.c
config.status: creating src/binding/f90/Makefile
config.status: creating src/binding/f90/mpi_sizeofs.f90
config.status: creating src/binding/f90/mpi_base.f90
config.status: creating src/packaging/Makefile
config.status: creating src/packaging/pkgconfig/mpich2-c.pc
config.status: creating src/packaging/pkgconfig/mpich2-cxx.pc
config.status: creating src/packaging/pkgconfig/mpich2-f77.pc
config.status: creating src/packaging/pkgconfig/mpich2-f90.pc
config.status: creating src/packaging/pkgconfig/Makefile
config.status: creating src/packaging/envmods/mpich2.module
config.status: WARNING:  'src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting
config.status: creating src/packaging/envmods/Makefile
config.status: creating src/env/mpixxx_opts.conf
config.status: creating src/env/mpicc
config.status: creating src/env/mpicc.conf
config.status: creating src/env/mpicc.bash
config.status: creating src/env/mpicxx
config.status: creating src/env/mpicxx.conf
config.status: creating src/env/mpicxx.bash
config.status: creating src/env/mpif77
config.status: creating src/env/mpif77.conf
config.status: creating src/env/mpif77.bash
config.status: creating src/env/mpif90
config.status: creating src/env/mpif90.conf
config.status: creating src/env/mpif90.bash
config.status: creating src/env/Makefile
config.status: creating src/util/createshlib
config.status: creating src/mpi/Makefile
config.status: creating src/mpi/attr/Makefile
config.status: creating src/mpi/coll/Makefile
config.status: creating src/mpi/comm/Makefile
config.status: creating src/mpi/datatype/Makefile
config.status: creating src/mpi/debugger/Makefile
config.status: creating src/mpi/errhan/Makefile
config.status: creating src/mpi/group/Makefile
config.status: creating src/mpi/init/Makefile
config.status: creating src/mpi/misc/Makefile
config.status: creating src/mpi/pt2pt/Makefile
config.status: creating src/mpi/rma/Makefile
config.status: creating src/mpi/spawn/Makefile
config.status: creating src/mpi/timer/Makefile
config.status: creating src/mpi/topo/Makefile
config.status: creating src/mpix/Makefile
config.status: creating src/mpix/comm/Makefile
config.status: creating src/mpid/Makefile
config.status: creating src/mpid/common/Makefile
config.status: creating src/mpid/common/datatype/Makefile
config.status: creating src/mpid/common/datatype/dataloop/Makefile
config.status: creating src/pm/Makefile
config.status: creating src/pmi/Makefile
config.status: creating src/pmi/simple/Makefile
config.status: creating src/nameserv/Makefile
config.status: creating src/nameserv/file/Makefile
config.status: creating src/nameserv/mpd/Makefile
config.status: creating src/nameserv/pmi/Makefile
config.status: creating src/nameserv/test/Makefile
config.status: creating src/util/Makefile
config.status: creating src/util/info/Makefile
config.status: creating src/util/instrm/Makefile
config.status: creating src/util/thread/Makefile
config.status: creating src/util/mem/Makefile
config.status: creating src/util/msgs/Makefile
config.status: creating src/util/param/Makefile
config.status: creating src/util/dbg/Makefile
config.status: creating src/util/dbg/getfuncstack
config.status: creating src/util/osserv/Makefile
config.status: creating src/util/procmap/Makefile
config.status: creating src/util/other/Makefile
config.status: creating src/include/mpi.h
config.status: creating test/Makefile
config.status: creating test/util/Makefile
config.status: creating test/basic/Makefile
config.status: creating test/commands/Makefile
config.status: creating test/commands/cmdtests
config.status: creating test/mpid/Makefile
config.status: creating test/mpid/ch3/Makefile
config.status: creating test/util/timer/Makefile
config.status: creating examples/Makefile
config.status: creating examples/f77/Makefile
config.status: creating examples/f90/Makefile
config.status: creating examples/cxx/Makefile
config.status: creating src/util/logging/Makefile
config.status: creating src/util/logging/common/Makefile
config.status: creating doc/Makefile
config.status: creating doc/mansrc/Makefile
config.status: creating doc/mansrc/createhtmlindex
config.status: creating doc/refman/Makefile
config.status: creating doc/installguide/Makefile
config.status: creating doc/userguide/Makefile
config.status: creating doc/logging/Makefile
config.status: creating doc/design/Makefile
config.status: creating doc/smpd/Makefile
config.status: creating doc/windev/Makefile
config.status: creating src/include/mpichconf.h
config.status: src/include/mpichconf.h is unchanged
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
config.status: executing default-5 commands
config.status: executing default-6 commands
config.status: executing default-7 commands
config.status: executing default-8 commands
config.status: executing default-9 commands
config.status: executing default-10 commands
config.status: executing default-11 commands
config.status: executing default-12 commands
=== configuring in test/mpi (/cygdrive/c/cygwin/mpich2-1.4/test/mpi)
configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local'  'F77=g95' 'FC=g95' --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR MPI TESTS
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking whether the C compiler works... yes
checking for C compiler default output file name... a.exe
checking for suffix of executables... .exe
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /cygdrive/c/cygwin/mpich2-1.4/bin/mpicc accepts -g... yes
checking for /cygdrive/c/cygwin/mpich2-1.4/bin/mpicc option to accept ISO C89... none needed
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for grep that handles long lines and -e... /usr/bin/grep
checking for fgrep... /usr/bin/grep -F
checking how to run the C preprocessor... /cygdrive/c/cygwin/mpich2-1.4/bin/mpicc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for library containing pthread_create... none required
checking for library containing pthread_barrier_init... no
checking for pthread_create... yes
checking for pthread_yield... no
checking for pthread_barrier_init... no
checking for pthread_barrier_wait... no
checking whether struct hostent contains h_addr_list... yes
checking for major version of MPI... 2
checking for minor version of MPI... 2
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether /cygdrive/c/cygwin/mpich2-1.4/bin/mpif77 accepts -g... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking how to get verbose linking output from /cygdrive/c/cygwin/mpich2-1.4/bin/mpif77... -v
checking for Fortran 77 libraries of /cygdrive/c/cygwin/mpich2-1.4/bin/mpif77...  -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1 -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/ -L/usr/lib/gcc// -L/lib// -L/usr/local/bin/../lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/local/lib/gcc-lib/i686-pc-cygwin/4.1.1/// -L/usr/lib// -lf95 -lm -lws2_32 -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32
checking for Fortran 77 name mangling... lower 2uscore
checking for Fortran libraries needed for getarg... none needed
checking whether Fortran 77 supports Cray-style pointer... no
checking whether we are using the GNU Fortran compiler... yes
checking whether /cygdrive/c/cygwin/mpich2-1.4/bin/mpif90 accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (/cygdrive/c/cygwin/mpich2-1.4/bin/mpif90  -nativelinking  ) works... yes
checking whether the Fortran 90 compiler (/cygdrive/c/cygwin/mpich2-1.4/bin/mpif90  -nativelinking  ) is a cross-compiler... no
checking for Fortran flag needed to accept free-form source... none
checking whether Fortran 90 supports Cray-style pointer... no
checking whether we are using the GNU C++ compiler... yes
checking whether /cygdrive/c/cygwin/mpich2-1.4/bin/mpicxx accepts -g... yes
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... no
checking whether MPI_2COMPLEX is available... no
checking size of void *... 4
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of short... 2
checking for C integer type of address size... int
checking for perl... /usr/bin/perl
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating Makefile
config.status: creating basic/Makefile
config.status: creating attr/Makefile
config.status: creating util/Makefile
config.status: creating coll/Makefile
config.status: creating comm/Makefile
config.status: creating datatype/Makefile
config.status: creating errhan/Makefile
config.status: creating group/Makefile
config.status: creating info/Makefile
config.status: creating init/Makefile
config.status: creating pt2pt/Makefile
config.status: creating rma/Makefile
config.status: creating spawn/Makefile
config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
config.status: creating f77/datatype/typeaints.h
config.status: creating f77/util/Makefile
config.status: creating f77/coll/Makefile
config.status: creating f77/comm/Makefile
config.status: creating f77/topo/Makefile
config.status: creating f77/init/Makefile
config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
config.status: creating f77/info/Makefile
config.status: creating f77/spawn/Makefile
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
config.status: creating f90/datatype/Makefile
config.status: creating f90/f90types/Makefile
config.status: creating f90/util/Makefile
config.status: creating f90/coll/Makefile
config.status: creating f90/comm/Makefile
config.status: creating f90/topo/Makefile
config.status: creating f90/init/Makefile
config.status: creating f90/pt2pt/Makefile
config.status: creating f90/rma/Makefile
config.status: creating f90/info/Makefile
config.status: creating f90/spawn/Makefile
config.status: creating f90/timer/Makefile
config.status: creating f90/ext/Makefile
config.status: creating f90/ext/testlist
config.status: creating f90/io/Makefile
config.status: creating f90/misc/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
config.status: creating cxx/comm/Makefile
config.status: creating cxx/coll/Makefile
config.status: creating cxx/errhan/Makefile
config.status: creating cxx/info/Makefile
config.status: creating cxx/datatype/Makefile
config.status: creating cxx/io/Makefile
config.status: creating cxx/init/Makefile
config.status: creating cxx/rma/Makefile
config.status: creating cxx/spawn/Makefile
config.status: creating threads/Makefile
config.status: creating threads/pt2pt/Makefile
config.status: creating threads/util/Makefile
config.status: creating threads/comm/Makefile
config.status: creating threads/init/Makefile
config.status: creating threads/spawn/Makefile
config.status: creating errors/Makefile
config.status: creating errors/attr/Makefile
config.status: creating errors/basic/Makefile
config.status: creating errors/coll/Makefile
config.status: creating errors/comm/Makefile
config.status: creating errors/faults/Makefile
config.status: creating errors/group/Makefile
config.status: creating errors/pt2pt/Makefile
config.status: creating errors/rma/Makefile
config.status: creating errors/spawn/Makefile
config.status: creating errors/topo/Makefile
config.status: creating errors/io/Makefile
config.status: creating errors/cxx/Makefile
config.status: creating errors/cxx/errhan/Makefile
config.status: creating errors/cxx/io/Makefile
config.status: creating errors/f77/Makefile
config.status: creating errors/f90/Makefile
config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating include/mpitestconf.h
config.status: include/mpitestconf.h is unchanged
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
Configuration completed.
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