[mpich-discuss] mpich2-1.2.1p1 - cannot create regular file`/index.htm': Permission denied
Anthony Chan
chan at mcs.anl.gov
Thu Mar 11 15:53:36 CST 2010
Pavan,
This guy's system is pretty old, he does not seem to have the autotools
needed to rebuild the configure and Makefile.in involved.
A.Chan
----- "Pavan Balaji" <balaji at mcs.anl.gov> wrote:
> Ah, I should have seen this earlier. My guess is that you are running
> into the autotools ordering issue that we fixed in r6292
> (http://trac.mcs.anl.gov/projects/mpich2/changeset/6292).
>
> Can you try out the latest nightly snapshot to see if the problem
> still
> exists?
>
> http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/nightly/trunk
>
> -- Pavan
>
> On 03/11/2010 03:34 PM, Rajeev Thakur wrote:
> > We build MPICH2 quite routinely following the exact steps in the
> README
> > file, so something strange is happening in your specific case.
> >
> > Rajeev
> >
> >
> ------------------------------------------------------------------------
> > *From:* mpich-discuss-bounces at mcs.anl.gov
> > [mailto:mpich-discuss-bounces at mcs.anl.gov] *On Behalf Of
> *Preeti
> > *Sent:* Thursday, March 11, 2010 1:26 PM
> > *To:* mpich-discuss at mcs.anl.gov
> > *Subject:* Re: [mpich-discuss] mpich2-1.2.1p1 - cannot create
> > regular file`/index.htm': Permission denied
> >
> > Hi
> >
> > Thanks for the replies, but I get following errors.
> >
> > 1. If I do only build in /tmp
> > cannot create regular file `/index.htm': Permission denied
> >
> > 2. if I do everything in /tmp, then the following error.
> > " Making all in mpl
> > /bin/sh: line 17: cd: mpl: No such file or directory
> > make[3]: *** [all-recursive] Error 1"
> >
> > I have sent both log files earlier.
> > Yes, the /home/vss is network file system. I have no root access
> to
> > the system.
> >
> > Is there any way out of this?
> > Please help.
> >
> >
> > Thanks
> > Preeti
> >
> >
> >
> >
> > On Thu, Mar 11, 2010 at 11:18 PM, Rajeev Thakur
> <thakur at mcs.anl.gov
> > <mailto:thakur at mcs.anl.gov>> wrote:
> >
> > Just untar and build it again on a local disk. The install
> directory
> > (--prefix option to configure) can be on NFS.
> >
> > Rajeev
> >
> > > -----Original Message-----
> > > From: mpich-discuss-bounces at mcs.anl.gov
> > <mailto:mpich-discuss-bounces at mcs.anl.gov>
> > > [mailto:mpich-discuss-bounces at mcs.anl.gov
> > <mailto:mpich-discuss-bounces at mcs.anl.gov>] On Behalf Of
> > > chan at mcs.anl.gov <mailto:chan at mcs.anl.gov>
> > > Sent: Thursday, March 11, 2010 11:48 AM
> > > To: mpich-discuss at mcs.anl.gov
> <mailto:mpich-discuss at mcs.anl.gov>
> > > Subject: Re: [mpich-discuss] mpich2-1.2.1p1 - cannot
> create
> > > regular file `/index.htm': Permission denied
> > >
> > >
> > > Is your /home/vss a local filesystem or some type
> > > network file system ? If /home/vss is a network
> > > filesystem, the problem could be incorrect clock
> > > on the filesystem. If so, could you copy
> > > everything to a local filesystem like /tmp(assuming
> > > it is big enough) and try again ?
> > >
> > > ----- "Preeti" <preeti at csa.iisc.ernet.in
> > <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > >
> > > > Hello
> > > >
> > > > I have rebuilt everything without setting the flags
> also
> > > >
> > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > > --prefix=/home/vss/preeti/bin/2-1.2.1build --enable-f90
> 2>&1
> > | tee
> > > > c.log
> > > >
> > > > make 2>&1 | tee m.log
> > > > make install 2>&1 | tee mi.log
> > > >
> > > >
> > > > and this time I get the following error
> > > >
> > > > /usr/bin/install -c -m 644 index.htm /index.htm
> > > > /usr/bin/install: cannot create regular file
> `/index.htm':
> > > Permission
> > > > denied
> > > > mkdir: cannot create directory `/www1': Permission
> denied
> > > >
> > > >
> > > > The log files are attached.
> > > > What am I missing?
> > > >
> > > > Appreciate your help.
> > > >
> > > >
> > > > Thanks
> > > > Preeti
> > > >
> > > >
> > > >
> > > >
> > > > On Thu, Mar 11, 2010 at 4:37 PM, Preeti
> > <preeti at csa.iisc.ernet.in
> <mailto:preeti at csa.iisc.ernet.in>>
> > > > wrote:
> > > >
> > > > > Hello
> > > > >
> > > > > I have rebuilt everything from scratch and did vpath
> build.
> > > > > I set the following
> > > > >
> > > > >
> > > > > export F90=gfortran
> > > > > export F77=gfortran
> > > > > export LD_LIBRARY_PATH=/usr/lib64:/lib:/usr/lib
> > > > > export LD_RUN_PATH=/usr/lib64:/lib:/usr/lib
> > > > >
> > > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > > > --prefix=/home/vss/preeti/bin/2-1.2.1p1 --enable-f90
> 2>&1
> > | tee
> > > > c.log
> > > > >
> > > > > make 2>&1 | tee m.log
> > > > >
> > > > >
> > > > > Then I get the error
> > > > >
> > > > > Making all in mpl
> > > > > /bin/sh: line 17: cd: mpl: No such file or directory
> > > > >
> > > > > make[3]: *** [all-recursive] Error 1
> > > > >
> > > > > The files are attached.
> > > > > Please help.
> > > > >
> > > > >
> > > > > Thanks
> > > > > Preeti
> > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > On Thu, Mar 11, 2010 at 1:53 AM, <chan at mcs.anl.gov
> > <mailto:chan at mcs.anl.gov>> wrote:
> > > > >
> > > > >>
> > > > >> I don't think setting F77 and F90 causes the problem
> that
> > > > >> you are seeing. The directories or subpackges that
> have
> > > > >> problems use a different build system than the
> majority of
> > > > >> mpich2 base, so it could be that there is bugs in
> the
> > > build system
> > > > >> in those subpackage.
> > > > >>
> > > > >> Since you didn't do "make distclean" before you
> > reconfigure, so
> > > > >> the m.log(.old) do not tell me much. Can you rebuild
> > everything
> > > > >> from scratch ? i.e. untar the mpich2 tarball in a
> different
> > > > location.
> > > > >> Instead of doing an inpath build (i.e. cd
> mpich2-1.2.1p1/ ;
> > > > >> ./configure....),
> > > > >> could you do a VPATH build as documented in the
> README
> > > (search for
> > > > the
> > > > >> word VPATH)? Send us the configure and make outputs
> again
> > > > >> (be sure to add 2>&1 in creating the output files).
> > > > >>
> > > > >> A.Chan
> > > > >>
> > > > >>
> > > > >> ----- "Preeti" <preeti at csa.iisc.ernet.in
> > <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > > >>
> > > > >> > Hello
> > > > >> >
> > > > >> > Thank you for the quick response.
> > > > >> >
> > > > >> > I forgot to mention that I had set two flags
> earlier.
> > > > >> > export F90=gfortran
> > > > >> > export F77=gfortran
> > > > >> >
> > > > >> > The earlier problem is gone when I compiled without
> setting
> > > > these. I
> > > > >> > am
> > > > >> > attaching all log files, the earlier ones and the
> new ones.
> > > > >> >
> > > > >> > Now I am facing another error which is from "make
> > install 2>& |
> > > > tee
> > > > >> > mi.log"
> > > > >> >
> > > > >> > /usr/bin/install: cannot create regular file
> `/index.htm':
> > > > Permission
> > > > >> > denied
> > > > >> >
> > > > >> > Probably some variable is not set. I tried setting
> > docdir too.
> > > > >> > mi.log is also attached.
> > > > >> >
> > > > >> > Please help.
> > > > >> >
> > > > >> >
> > > > >> > Thanks
> > > > >> > Preeti
> > > > >> >
> > > > >> >
> > > > >> >
> > > > >> > On Wed, Mar 10, 2010 at 9:33 PM, <chan at mcs.anl.gov
> > <mailto:chan at mcs.anl.gov>> wrote:
> > > > >> >
> > > > >> > >
> > > > >> > > It is unclear what went wrong based on what
> you've
> > > provided so
> > > > far.
> > > > >> > > Can you send us the configure and make outputs
> as
> > stated in
> > > > the
> > > > >> > > README (be sure to include the stderr in the
> output
> > file) ?
> > > > >> > >
> > > > >> > > ----- "Preeti" <preeti at csa.iisc.ernet.in
> > <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > > >> > >
> > > > >> > > > Hello
> > > > >> > > >
> > > > >> > > > I am trying to install mpich2-1.2.1p1 on a
> 64-bit Linux
> > > > system.
> > > > >> > > >
> > > > >> > > > Configuration was successful.
> > > > >> > > > ./configure --prefix=$HOME/local/mpich2-1.2.1
> > > --enable-f90 |
> > > > tee
> > > > >> > > > c.log
> > > > >> > >
> > > > >> > > BTW, you didn't include stderr in c.log. Depends
> on
> > > the shell
> > > > you
> > > > >> > > use, you need to either add "&" or "2>&1". See
> > README for
> > > > >> > details..
> > > > >> > >
> > > > >> > > A.Chan
> > > > >> > >
> > > > >> > > _______________________________________________
> > > > >> > > mpich-discuss mailing list
> > > > >> > > mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > > >> > >
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > > >> > >
> > > > >> > > --
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> > > > >> > >
> > > > >> > >
> > > > >> >
> > > > >> > _______________________________________________
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> > > > >> > mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > > >> >
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > > >> _______________________________________________
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> > > > >>
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> > > >
> > > > _______________________________________________
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> <mailto:mpich-discuss at mcs.anl.gov>
> > > >
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > _______________________________________________
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> <mailto:mpich-discuss at mcs.anl.gov>
> > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > >
> >
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> <mailto:mpich-discuss at mcs.anl.gov>
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> >
> ------------------------------------------------------------------------
> >
> > _______________________________________________
> > mpich-discuss mailing list
> > mpich-discuss at mcs.anl.gov
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
> --
> Pavan Balaji
> http://www.mcs.anl.gov/~balaji
> _______________________________________________
> mpich-discuss mailing list
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