[mpich-discuss] mpich2-1.2.1p1 - cannot create regular file`/index.htm': Permission denied
Pavan Balaji
balaji at mcs.anl.gov
Thu Mar 11 15:43:34 CST 2010
Ah, I should have seen this earlier. My guess is that you are running
into the autotools ordering issue that we fixed in r6292
(http://trac.mcs.anl.gov/projects/mpich2/changeset/6292).
Can you try out the latest nightly snapshot to see if the problem still
exists?
http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/nightly/trunk
-- Pavan
On 03/11/2010 03:34 PM, Rajeev Thakur wrote:
> We build MPICH2 quite routinely following the exact steps in the README
> file, so something strange is happening in your specific case.
>
> Rajeev
>
> ------------------------------------------------------------------------
> *From:* mpich-discuss-bounces at mcs.anl.gov
> [mailto:mpich-discuss-bounces at mcs.anl.gov] *On Behalf Of *Preeti
> *Sent:* Thursday, March 11, 2010 1:26 PM
> *To:* mpich-discuss at mcs.anl.gov
> *Subject:* Re: [mpich-discuss] mpich2-1.2.1p1 - cannot create
> regular file`/index.htm': Permission denied
>
> Hi
>
> Thanks for the replies, but I get following errors.
>
> 1. If I do only build in /tmp
> cannot create regular file `/index.htm': Permission denied
>
> 2. if I do everything in /tmp, then the following error.
> " Making all in mpl
> /bin/sh: line 17: cd: mpl: No such file or directory
> make[3]: *** [all-recursive] Error 1"
>
> I have sent both log files earlier.
> Yes, the /home/vss is network file system. I have no root access to
> the system.
>
> Is there any way out of this?
> Please help.
>
>
> Thanks
> Preeti
>
>
>
>
> On Thu, Mar 11, 2010 at 11:18 PM, Rajeev Thakur <thakur at mcs.anl.gov
> <mailto:thakur at mcs.anl.gov>> wrote:
>
> Just untar and build it again on a local disk. The install directory
> (--prefix option to configure) can be on NFS.
>
> Rajeev
>
> > -----Original Message-----
> > From: mpich-discuss-bounces at mcs.anl.gov
> <mailto:mpich-discuss-bounces at mcs.anl.gov>
> > [mailto:mpich-discuss-bounces at mcs.anl.gov
> <mailto:mpich-discuss-bounces at mcs.anl.gov>] On Behalf Of
> > chan at mcs.anl.gov <mailto:chan at mcs.anl.gov>
> > Sent: Thursday, March 11, 2010 11:48 AM
> > To: mpich-discuss at mcs.anl.gov <mailto:mpich-discuss at mcs.anl.gov>
> > Subject: Re: [mpich-discuss] mpich2-1.2.1p1 - cannot create
> > regular file `/index.htm': Permission denied
> >
> >
> > Is your /home/vss a local filesystem or some type
> > network file system ? If /home/vss is a network
> > filesystem, the problem could be incorrect clock
> > on the filesystem. If so, could you copy
> > everything to a local filesystem like /tmp(assuming
> > it is big enough) and try again ?
> >
> > ----- "Preeti" <preeti at csa.iisc.ernet.in
> <mailto:preeti at csa.iisc.ernet.in>> wrote:
> >
> > > Hello
> > >
> > > I have rebuilt everything without setting the flags also
> > >
> > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > --prefix=/home/vss/preeti/bin/2-1.2.1build --enable-f90 2>&1
> | tee
> > > c.log
> > >
> > > make 2>&1 | tee m.log
> > > make install 2>&1 | tee mi.log
> > >
> > >
> > > and this time I get the following error
> > >
> > > /usr/bin/install -c -m 644 index.htm /index.htm
> > > /usr/bin/install: cannot create regular file `/index.htm':
> > Permission
> > > denied
> > > mkdir: cannot create directory `/www1': Permission denied
> > >
> > >
> > > The log files are attached.
> > > What am I missing?
> > >
> > > Appreciate your help.
> > >
> > >
> > > Thanks
> > > Preeti
> > >
> > >
> > >
> > >
> > > On Thu, Mar 11, 2010 at 4:37 PM, Preeti
> <preeti at csa.iisc.ernet.in <mailto:preeti at csa.iisc.ernet.in>>
> > > wrote:
> > >
> > > > Hello
> > > >
> > > > I have rebuilt everything from scratch and did vpath build.
> > > > I set the following
> > > >
> > > >
> > > > export F90=gfortran
> > > > export F77=gfortran
> > > > export LD_LIBRARY_PATH=/usr/lib64:/lib:/usr/lib
> > > > export LD_RUN_PATH=/usr/lib64:/lib:/usr/lib
> > > >
> > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > > --prefix=/home/vss/preeti/bin/2-1.2.1p1 --enable-f90 2>&1
> | tee
> > > c.log
> > > >
> > > > make 2>&1 | tee m.log
> > > >
> > > >
> > > > Then I get the error
> > > >
> > > > Making all in mpl
> > > > /bin/sh: line 17: cd: mpl: No such file or directory
> > > >
> > > > make[3]: *** [all-recursive] Error 1
> > > >
> > > > The files are attached.
> > > > Please help.
> > > >
> > > >
> > > > Thanks
> > > > Preeti
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > On Thu, Mar 11, 2010 at 1:53 AM, <chan at mcs.anl.gov
> <mailto:chan at mcs.anl.gov>> wrote:
> > > >
> > > >>
> > > >> I don't think setting F77 and F90 causes the problem that
> > > >> you are seeing. The directories or subpackges that have
> > > >> problems use a different build system than the majority of
> > > >> mpich2 base, so it could be that there is bugs in the
> > build system
> > > >> in those subpackage.
> > > >>
> > > >> Since you didn't do "make distclean" before you
> reconfigure, so
> > > >> the m.log(.old) do not tell me much. Can you rebuild
> everything
> > > >> from scratch ? i.e. untar the mpich2 tarball in a different
> > > location.
> > > >> Instead of doing an inpath build (i.e. cd mpich2-1.2.1p1/ ;
> > > >> ./configure....),
> > > >> could you do a VPATH build as documented in the README
> > (search for
> > > the
> > > >> word VPATH)? Send us the configure and make outputs again
> > > >> (be sure to add 2>&1 in creating the output files).
> > > >>
> > > >> A.Chan
> > > >>
> > > >>
> > > >> ----- "Preeti" <preeti at csa.iisc.ernet.in
> <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > >>
> > > >> > Hello
> > > >> >
> > > >> > Thank you for the quick response.
> > > >> >
> > > >> > I forgot to mention that I had set two flags earlier.
> > > >> > export F90=gfortran
> > > >> > export F77=gfortran
> > > >> >
> > > >> > The earlier problem is gone when I compiled without setting
> > > these. I
> > > >> > am
> > > >> > attaching all log files, the earlier ones and the new ones.
> > > >> >
> > > >> > Now I am facing another error which is from "make
> install 2>& |
> > > tee
> > > >> > mi.log"
> > > >> >
> > > >> > /usr/bin/install: cannot create regular file `/index.htm':
> > > Permission
> > > >> > denied
> > > >> >
> > > >> > Probably some variable is not set. I tried setting
> docdir too.
> > > >> > mi.log is also attached.
> > > >> >
> > > >> > Please help.
> > > >> >
> > > >> >
> > > >> > Thanks
> > > >> > Preeti
> > > >> >
> > > >> >
> > > >> >
> > > >> > On Wed, Mar 10, 2010 at 9:33 PM, <chan at mcs.anl.gov
> <mailto:chan at mcs.anl.gov>> wrote:
> > > >> >
> > > >> > >
> > > >> > > It is unclear what went wrong based on what you've
> > provided so
> > > far.
> > > >> > > Can you send us the configure and make outputs as
> stated in
> > > the
> > > >> > > README (be sure to include the stderr in the output
> file) ?
> > > >> > >
> > > >> > > ----- "Preeti" <preeti at csa.iisc.ernet.in
> <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > >> > >
> > > >> > > > Hello
> > > >> > > >
> > > >> > > > I am trying to install mpich2-1.2.1p1 on a 64-bit Linux
> > > system.
> > > >> > > >
> > > >> > > > Configuration was successful.
> > > >> > > > ./configure --prefix=$HOME/local/mpich2-1.2.1
> > --enable-f90 |
> > > tee
> > > >> > > > c.log
> > > >> > >
> > > >> > > BTW, you didn't include stderr in c.log. Depends on
> > the shell
> > > you
> > > >> > > use, you need to either add "&" or "2>&1". See
> README for
> > > >> > details..
> > > >> > >
> > > >> > > A.Chan
> > > >> > >
> > > >> > > _______________________________________________
> > > >> > > mpich-discuss mailing list
> > > >> > > mpich-discuss at mcs.anl.gov
> <mailto:mpich-discuss at mcs.anl.gov>
> > > >> > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > >> > >
> > > >> > > --
> > > >> > > This message has been scanned for viruses and
> > > >> > > dangerous content by MailScanner, and is
> > > >> > > believed to be clean.
> > > >> > >
> > > >> > >
> > > >> >
> > > >> > _______________________________________________
> > > >> > mpich-discuss mailing list
> > > >> > mpich-discuss at mcs.anl.gov
> <mailto:mpich-discuss at mcs.anl.gov>
> > > >> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > >> _______________________________________________
> > > >> mpich-discuss mailing list
> > > >> mpich-discuss at mcs.anl.gov <mailto:mpich-discuss at mcs.anl.gov>
> > > >> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > >>
> > > >> --
> > > >> This message has been scanned for viruses and
> > > >> dangerous content by MailScanner, and is
> > > >> believed to be clean.
> > > >>
> > > >>
> > > >
> > >
> > > _______________________________________________
> > > mpich-discuss mailing list
> > > mpich-discuss at mcs.anl.gov <mailto:mpich-discuss at mcs.anl.gov>
> > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > _______________________________________________
> > mpich-discuss mailing list
> > mpich-discuss at mcs.anl.gov <mailto:mpich-discuss at mcs.anl.gov>
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >
>
> _______________________________________________
> mpich-discuss mailing list
> mpich-discuss at mcs.anl.gov <mailto:mpich-discuss at mcs.anl.gov>
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
>
> --
> This message has been scanned for viruses and
> dangerous content by MailScanner, and is
> believed to be clean.
>
>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> mpich-discuss mailing list
> mpich-discuss at mcs.anl.gov
> https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
--
Pavan Balaji
http://www.mcs.anl.gov/~balaji
More information about the mpich-discuss
mailing list