[mpich-discuss] mpich2-1.2.1p1 - cannot createregular file`/index.htm': Permission denied
Rajeev Thakur
thakur at mcs.anl.gov
Thu Mar 11 16:00:18 CST 2010
The nightly snapshot is a fully built tar file. Does not need autotools.
Rajeev
> -----Original Message-----
> From: mpich-discuss-bounces at mcs.anl.gov
> [mailto:mpich-discuss-bounces at mcs.anl.gov] On Behalf Of Anthony Chan
> Sent: Thursday, March 11, 2010 3:54 PM
> To: mpich-discuss at mcs.anl.gov
> Subject: Re: [mpich-discuss] mpich2-1.2.1p1 - cannot
> createregular file`/index.htm': Permission denied
>
>
> Pavan,
>
> This guy's system is pretty old, he does not seem to have the
> autotools
> needed to rebuild the configure and Makefile.in involved.
>
> A.Chan
>
> ----- "Pavan Balaji" <balaji at mcs.anl.gov> wrote:
>
> > Ah, I should have seen this earlier. My guess is that you
> are running
> > into the autotools ordering issue that we fixed in r6292
> > (http://trac.mcs.anl.gov/projects/mpich2/changeset/6292).
> >
> > Can you try out the latest nightly snapshot to see if the problem
> > still
> > exists?
> >
> >
> http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarb
> alls/nightly/trunk
> >
> > -- Pavan
> >
> > On 03/11/2010 03:34 PM, Rajeev Thakur wrote:
> > > We build MPICH2 quite routinely following the exact steps in the
> > README
> > > file, so something strange is happening in your specific case.
> > >
> > > Rajeev
> > >
> > >
> >
> --------------------------------------------------------------
> ----------
> > > *From:* mpich-discuss-bounces at mcs.anl.gov
> > > [mailto:mpich-discuss-bounces at mcs.anl.gov] *On Behalf Of
> > *Preeti
> > > *Sent:* Thursday, March 11, 2010 1:26 PM
> > > *To:* mpich-discuss at mcs.anl.gov
> > > *Subject:* Re: [mpich-discuss] mpich2-1.2.1p1 - cannot create
> > > regular file`/index.htm': Permission denied
> > >
> > > Hi
> > >
> > > Thanks for the replies, but I get following errors.
> > >
> > > 1. If I do only build in /tmp
> > > cannot create regular file `/index.htm': Permission denied
> > >
> > > 2. if I do everything in /tmp, then the following error.
> > > " Making all in mpl
> > > /bin/sh: line 17: cd: mpl: No such file or directory
> > > make[3]: *** [all-recursive] Error 1"
> > >
> > > I have sent both log files earlier.
> > > Yes, the /home/vss is network file system. I have no
> root access
> > to
> > > the system.
> > >
> > > Is there any way out of this?
> > > Please help.
> > >
> > >
> > > Thanks
> > > Preeti
> > >
> > >
> > >
> > >
> > > On Thu, Mar 11, 2010 at 11:18 PM, Rajeev Thakur
> > <thakur at mcs.anl.gov
> > > <mailto:thakur at mcs.anl.gov>> wrote:
> > >
> > > Just untar and build it again on a local disk. The install
> > directory
> > > (--prefix option to configure) can be on NFS.
> > >
> > > Rajeev
> > >
> > > > -----Original Message-----
> > > > From: mpich-discuss-bounces at mcs.anl.gov
> > > <mailto:mpich-discuss-bounces at mcs.anl.gov>
> > > > [mailto:mpich-discuss-bounces at mcs.anl.gov
> > > <mailto:mpich-discuss-bounces at mcs.anl.gov>] On Behalf Of
> > > > chan at mcs.anl.gov <mailto:chan at mcs.anl.gov>
> > > > Sent: Thursday, March 11, 2010 11:48 AM
> > > > To: mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > > Subject: Re: [mpich-discuss] mpich2-1.2.1p1 - cannot
> > create
> > > > regular file `/index.htm': Permission denied
> > > >
> > > >
> > > > Is your /home/vss a local filesystem or some type
> > > > network file system ? If /home/vss is a network
> > > > filesystem, the problem could be incorrect clock
> > > > on the filesystem. If so, could you copy
> > > > everything to a local filesystem like /tmp(assuming
> > > > it is big enough) and try again ?
> > > >
> > > > ----- "Preeti" <preeti at csa.iisc.ernet.in
> > > <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > >
> > > > > Hello
> > > > >
> > > > > I have rebuilt everything without setting the flags
> > also
> > > > >
> > > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > > > --prefix=/home/vss/preeti/bin/2-1.2.1build
> --enable-f90
> > 2>&1
> > > | tee
> > > > > c.log
> > > > >
> > > > > make 2>&1 | tee m.log
> > > > > make install 2>&1 | tee mi.log
> > > > >
> > > > >
> > > > > and this time I get the following error
> > > > >
> > > > > /usr/bin/install -c -m 644 index.htm /index.htm
> > > > > /usr/bin/install: cannot create regular file
> > `/index.htm':
> > > > Permission
> > > > > denied
> > > > > mkdir: cannot create directory `/www1': Permission
> > denied
> > > > >
> > > > >
> > > > > The log files are attached.
> > > > > What am I missing?
> > > > >
> > > > > Appreciate your help.
> > > > >
> > > > >
> > > > > Thanks
> > > > > Preeti
> > > > >
> > > > >
> > > > >
> > > > >
> > > > > On Thu, Mar 11, 2010 at 4:37 PM, Preeti
> > > <preeti at csa.iisc.ernet.in
> > <mailto:preeti at csa.iisc.ernet.in>>
> > > > > wrote:
> > > > >
> > > > > > Hello
> > > > > >
> > > > > > I have rebuilt everything from scratch and did vpath
> > build.
> > > > > > I set the following
> > > > > >
> > > > > >
> > > > > > export F90=gfortran
> > > > > > export F77=gfortran
> > > > > > export LD_LIBRARY_PATH=/usr/lib64:/lib:/usr/lib
> > > > > > export LD_RUN_PATH=/usr/lib64:/lib:/usr/lib
> > > > > >
> > > > > > /home/vss/preeti/bin/mpich2-1.2.1p1/configure
> > > > > > --prefix=/home/vss/preeti/bin/2-1.2.1p1 --enable-f90
> > 2>&1
> > > | tee
> > > > > c.log
> > > > > >
> > > > > > make 2>&1 | tee m.log
> > > > > >
> > > > > >
> > > > > > Then I get the error
> > > > > >
> > > > > > Making all in mpl
> > > > > > /bin/sh: line 17: cd: mpl: No such file or directory
> > > > > >
> > > > > > make[3]: *** [all-recursive] Error 1
> > > > > >
> > > > > > The files are attached.
> > > > > > Please help.
> > > > > >
> > > > > >
> > > > > > Thanks
> > > > > > Preeti
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > >
> > > > > > On Thu, Mar 11, 2010 at 1:53 AM, <chan at mcs.anl.gov
> > > <mailto:chan at mcs.anl.gov>> wrote:
> > > > > >
> > > > > >>
> > > > > >> I don't think setting F77 and F90 causes
> the problem
> > that
> > > > > >> you are seeing. The directories or subpackges that
> > have
> > > > > >> problems use a different build system than the
> > majority of
> > > > > >> mpich2 base, so it could be that there is bugs in
> > the
> > > > build system
> > > > > >> in those subpackage.
> > > > > >>
> > > > > >> Since you didn't do "make distclean" before you
> > > reconfigure, so
> > > > > >> the m.log(.old) do not tell me much. Can
> you rebuild
> > > everything
> > > > > >> from scratch ? i.e. untar the mpich2 tarball in a
> > different
> > > > > location.
> > > > > >> Instead of doing an inpath build (i.e. cd
> > mpich2-1.2.1p1/ ;
> > > > > >> ./configure....),
> > > > > >> could you do a VPATH build as documented in the
> > README
> > > > (search for
> > > > > the
> > > > > >> word VPATH)? Send us the configure and
> make outputs
> > again
> > > > > >> (be sure to add 2>&1 in creating the output files).
> > > > > >>
> > > > > >> A.Chan
> > > > > >>
> > > > > >>
> > > > > >> ----- "Preeti" <preeti at csa.iisc.ernet.in
> > > <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > > > >>
> > > > > >> > Hello
> > > > > >> >
> > > > > >> > Thank you for the quick response.
> > > > > >> >
> > > > > >> > I forgot to mention that I had set two flags
> > earlier.
> > > > > >> > export F90=gfortran
> > > > > >> > export F77=gfortran
> > > > > >> >
> > > > > >> > The earlier problem is gone when I
> compiled without
> > setting
> > > > > these. I
> > > > > >> > am
> > > > > >> > attaching all log files, the earlier ones and the
> > new ones.
> > > > > >> >
> > > > > >> > Now I am facing another error which is from "make
> > > install 2>& |
> > > > > tee
> > > > > >> > mi.log"
> > > > > >> >
> > > > > >> > /usr/bin/install: cannot create regular file
> > `/index.htm':
> > > > > Permission
> > > > > >> > denied
> > > > > >> >
> > > > > >> > Probably some variable is not set. I
> tried setting
> > > docdir too.
> > > > > >> > mi.log is also attached.
> > > > > >> >
> > > > > >> > Please help.
> > > > > >> >
> > > > > >> >
> > > > > >> > Thanks
> > > > > >> > Preeti
> > > > > >> >
> > > > > >> >
> > > > > >> >
> > > > > >> > On Wed, Mar 10, 2010 at 9:33 PM,
> <chan at mcs.anl.gov
> > > <mailto:chan at mcs.anl.gov>> wrote:
> > > > > >> >
> > > > > >> > >
> > > > > >> > > It is unclear what went wrong based on what
> > you've
> > > > provided so
> > > > > far.
> > > > > >> > > Can you send us the configure and make outputs
> > as
> > > stated in
> > > > > the
> > > > > >> > > README (be sure to include the stderr in the
> > output
> > > file) ?
> > > > > >> > >
> > > > > >> > > ----- "Preeti" <preeti at csa.iisc.ernet.in
> > > <mailto:preeti at csa.iisc.ernet.in>> wrote:
> > > > > >> > >
> > > > > >> > > > Hello
> > > > > >> > > >
> > > > > >> > > > I am trying to install mpich2-1.2.1p1 on a
> > 64-bit Linux
> > > > > system.
> > > > > >> > > >
> > > > > >> > > > Configuration was successful.
> > > > > >> > > > ./configure --prefix=$HOME/local/mpich2-1.2.1
> > > > --enable-f90 |
> > > > > tee
> > > > > >> > > > c.log
> > > > > >> > >
> > > > > >> > > BTW, you didn't include stderr in
> c.log. Depends
> > on
> > > > the shell
> > > > > you
> > > > > >> > > use, you need to either add "&" or "2>&1". See
> > > README for
> > > > > >> > details..
> > > > > >> > >
> > > > > >> > > A.Chan
> > > > > >> > >
> > > > > >> > > _______________________________________________
> > > > > >> > > mpich-discuss mailing list
> > > > > >> > > mpich-discuss at mcs.anl.gov
> > > <mailto:mpich-discuss at mcs.anl.gov>
> > > > > >> > >
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > > > >> > >
> > > > > >> > > --
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> > > > > >> > > believed to be clean.
> > > > > >> > >
> > > > > >> > >
> > > > > >> >
> > > > > >> > _______________________________________________
> > > > > >> > mpich-discuss mailing list
> > > > > >> > mpich-discuss at mcs.anl.gov
> > > <mailto:mpich-discuss at mcs.anl.gov>
> > > > > >> >
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > > > >> _______________________________________________
> > > > > >> mpich-discuss mailing list
> > > > > >> mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > > > >>
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > > > >>
> > > > > >> --
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> > > > > >> believed to be clean.
> > > > > >>
> > > > > >>
> > > > > >
> > > > >
> > > > > _______________________________________________
> > > > > mpich-discuss mailing list
> > > > > mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > > >
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > > _______________________________________________
> > > > mpich-discuss mailing list
> > > > mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > > >
> > >
> > > _______________________________________________
> > > mpich-discuss mailing list
> > > mpich-discuss at mcs.anl.gov
> > <mailto:mpich-discuss at mcs.anl.gov>
> > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> > >
> > > --
> > > This message has been scanned for viruses and
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> > >
> > >
> > >
> > >
> >
> --------------------------------------------------------------
> ----------
> > >
> > > _______________________________________________
> > > mpich-discuss mailing list
> > > mpich-discuss at mcs.anl.gov
> > > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> >
> > --
> > Pavan Balaji
> > http://www.mcs.anl.gov/~balaji
> > _______________________________________________
> > mpich-discuss mailing list
> > mpich-discuss at mcs.anl.gov
> > https://lists.mcs.anl.gov/mailman/listinfo/mpich-discuss
> _______________________________________________
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>
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