[mpich-discuss] a question about MPICH2 on SGI under local account

[Rui Mei]

Hi, all,

I sent a post on problems with installation of MPICH on SGI under my local
account one month ago. Thanks to your help, it is fixed now. I am able to
install it with those commands:

./configure --prefix=/u/home/rum06003/mpi --with-device=ch3:sock 2>&1 | tee
c.txt

make 2>&1 | tee m.txt

make install 2>&1 | tee mi.txt.

Now the problem is that when I run our research model, it fails in the
configure process and part of the error message is as follows, related to
MPI. But there was no error message during MPI installation. Thanks if
someone can offer some advice on this issue.

Rui

.intr.o -L/opt/i/netcdf/lib -lnetcdf -static-intel
-L/u/home/rum06003/mpi2/lib -lmpich
/u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x13a2): In function
`MPIR_Get_contextid':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x13f2): In function
`MPIR_Get_contextid':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x2ad2): In function
`MPIR_Get_intercomm_contextid':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x2b22): In function
`MPIR_Get_intercomm_contextid':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4182): In function
`MPIR_Err_return_comm':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x41d2): In function
`MPIR_Err_return_comm':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x43d2): In function
`MPIR_Err_return_win':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4422): In function
`MPIR_Err_return_win':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x47d2): In function
`MPIR_Nest_decr_export':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4832): In function
`MPIR_Nest_decr_export':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x48e2): In function
`MPIR_Nest_incr_export':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4942): In function
`MPIR_Nest_incr_export':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x522): In function
`MPIR_Init_thread':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x562): In function
`MPIR_Init_thread':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x6c2): In function
`MPIR_Thread_CS_Finalize':
: undefined reference to `pthread_key_delete'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x6f2): In function
`MPIR_Thread_CS_Finalize':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x752): In function
`MPIR_Thread_CS_Finalize':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x762): In function
`MPIR_Thread_CS_Finalize':
: undefined reference to `pthread_key_delete'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x7b2): In function
`MPIR_Thread_CS_Finalize':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x802): In function
`MPIR_Thread_CS_Init':
: undefined reference to `pthread_key_create'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xb42): In function
`PMPI_Init_thread':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xb92): In function
`PMPI_Init_thread':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xc62): In function
`PMPI_Init_thread':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xcb2): In function
`PMPI_Init_thread':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xcf2): In function
`PMPI_Init_thread':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xd42): In function
`PMPI_Init_thread':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x2a2): In function
`PMPI_Recv':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x372): In function
`PMPI_Recv':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x3c2): In function
`PMPI_Recv':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x402): In function
`PMPI_Recv':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x292): In function
`PMPI_Send':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x362): In function
`PMPI_Send':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x3b2): In function
`PMPI_Send':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x3f2): In function
`PMPI_Send':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(mpid_type_debug.o)(.text+0x17f2): In
function `MPIDI_Datatype_printf':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(mpid_type_debug.o)(.text+0x1842): In
function `MPIDI_Datatype_printf':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x2b22):
In function `MPIDI_CH3_ReqHandler_AccumRespDerivedDTComplete':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x2b72):
In function `MPIDI_CH3_ReqHandler_AccumRespDerivedDTComplete':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x3402):
In function `MPIDI_CH3_ReqHandler_PutAccumRespComplete':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x3452):
In function `MPIDI_CH3_ReqHandler_PutAccumRespComplete':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0x2a62): In
function `MPIDI_CH3_PktHandler_Accumulate':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0x2ab2): In
function `MPIDI_CH3_PktHandler_Accumulate':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0xc542): In
function `MPIDI_Win_complete':
: undefined reference to `pthread_getspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0xc592): In
function `MPIDI_Win_complete':
: undefined reference to `pthread_setspecific'
/u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0xd732): In
function `MPIDI_Win_post':
: undefined reference to `pthread_getspecific'
etc .................
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