[mpich-discuss] a question about MPICH2 on SGI under local account

[Anthony Chan]

You should use MPI compiler wrapper (mpicc, mpif90...) to compile/link
your app.  If not, you need to link with all MPICH2 supported libraries
by hand, e.g. -lpthread.   Add -show to the MPI wrapper to see what the
supported libraries are.

A.Chan
----- "Rui Mei" <meir02ster at gmail.com> wrote:

> Hi, all,
> 
> I sent a post on problems with installation of MPICH on SGI under my
> local
> account one month ago. Thanks to your help, it is fixed now. I am able
> to
> install it with those commands:
> 
> ./configure --prefix=/u/home/rum06003/mpi --with-device=ch3:sock 2>&1
> | tee
> c.txt
> 
> make 2>&1 | tee m.txt
> 
> make install 2>&1 | tee mi.txt.
> 
> Now the problem is that when I run our research model, it fails in
> the
> configure process and part of the error message is as follows, related
> to
> MPI. But there was no error message during MPI installation. Thanks
> if
> someone can offer some advice on this issue.
> 
> Rui
> 
> .intr.o -L/opt/i/netcdf/lib -lnetcdf -static-intel
> -L/u/home/rum06003/mpi2/lib -lmpich
> /u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x13a2): In
> function
> `MPIR_Get_contextid':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x13f2): In
> function
> `MPIR_Get_contextid':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x2ad2): In
> function
> `MPIR_Get_intercomm_contextid':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(commutil.o)(.text+0x2b22): In
> function
> `MPIR_Get_intercomm_contextid':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4182): In
> function
> `MPIR_Err_return_comm':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x41d2): In
> function
> `MPIR_Err_return_comm':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x43d2): In
> function
> `MPIR_Err_return_win':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4422): In
> function
> `MPIR_Err_return_win':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x47d2): In
> function
> `MPIR_Nest_decr_export':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4832): In
> function
> `MPIR_Nest_decr_export':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x48e2): In
> function
> `MPIR_Nest_incr_export':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(errutil.o)(.text+0x4942): In
> function
> `MPIR_Nest_incr_export':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x522): In
> function
> `MPIR_Init_thread':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x562): In
> function
> `MPIR_Init_thread':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x6c2): In
> function
> `MPIR_Thread_CS_Finalize':
> : undefined reference to `pthread_key_delete'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x6f2): In
> function
> `MPIR_Thread_CS_Finalize':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x752): In
> function
> `MPIR_Thread_CS_Finalize':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x762): In
> function
> `MPIR_Thread_CS_Finalize':
> : undefined reference to `pthread_key_delete'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x7b2): In
> function
> `MPIR_Thread_CS_Finalize':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0x802): In
> function
> `MPIR_Thread_CS_Init':
> : undefined reference to `pthread_key_create'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xb42): In
> function
> `PMPI_Init_thread':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xb92): In
> function
> `PMPI_Init_thread':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xc62): In
> function
> `PMPI_Init_thread':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xcb2): In
> function
> `PMPI_Init_thread':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xcf2): In
> function
> `PMPI_Init_thread':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(initthread.o)(.text+0xd42): In
> function
> `PMPI_Init_thread':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x2a2): In
> function
> `PMPI_Recv':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x372): In
> function
> `PMPI_Recv':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x3c2): In
> function
> `PMPI_Recv':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(recv.o)(.text+0x402): In
> function
> `PMPI_Recv':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x292): In
> function
> `PMPI_Send':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x362): In
> function
> `PMPI_Send':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x3b2): In
> function
> `PMPI_Send':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(send.o)(.text+0x3f2): In
> function
> `PMPI_Send':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(mpid_type_debug.o)(.text+0x17f2):
> In
> function `MPIDI_Datatype_printf':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(mpid_type_debug.o)(.text+0x1842):
> In
> function `MPIDI_Datatype_printf':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x2b22):
> In function `MPIDI_CH3_ReqHandler_AccumRespDerivedDTComplete':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x2b72):
> In function `MPIDI_CH3_ReqHandler_AccumRespDerivedDTComplete':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x3402):
> In function `MPIDI_CH3_ReqHandler_PutAccumRespComplete':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_handle_recv_req.o)(.text+0x3452):
> In function `MPIDI_CH3_ReqHandler_PutAccumRespComplete':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0x2a62):
> In
> function `MPIDI_CH3_PktHandler_Accumulate':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0x2ab2):
> In
> function `MPIDI_CH3_PktHandler_Accumulate':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0xc542):
> In
> function `MPIDI_Win_complete':
> : undefined reference to `pthread_getspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0xc592):
> In
> function `MPIDI_Win_complete':
> : undefined reference to `pthread_setspecific'
> /u/home/rum06003/mpi2/lib/libmpich.a(ch3u_rma_sync.o)(.text+0xd732):
> In
> function `MPIDI_Win_post':
> : undefined reference to `pthread_getspecific'
> etc .................
> 
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