[mpich-discuss] building 32 bit shmem on 64 bit linux system

[Daniel Fetchinson]

Yes, this is what I check all the time, 'which mpicc' and 'which
mpirun' point to the same directory. So I'm really clueless :(

I'll look into mpich2 but I'm afraid that the mpich1 -> mpich2
transition will introduce its own problems, but hopefully not.

Cheers,
Daniel



> The usual cause of this is a mismatched mpicc and mpirun. If "which mpicc"
> and "which mpirun" return the correct ones, then I don't know what is
> happening here.
>
> Also, if there is no particular reason you need to use MPICH-1, we recommend
> switching to MPICH2. It is more robust and it is where all our development
> effort is going.
>
> Rajeev


>> > It must be the mpirun then. Make sure you use the mpirun
>> from the same
>> > build. Give the full path if necessary.
>> >
>> > Rajeev
>>
>> Thanks, but there is only one installation of mpi on the machine and
>> that installation is the one I keep compiling. So even if it wanted to
>> execute the wrong mpicc/mpirun/etc it couldn't because there is only 1
>> copy at any given time.
>>
>> Nevertheless I recompiled now mpi as well as my program and still I
>> get the same error:
>>
>> 0 - MPI_INIT : MPIRUN chose the wrong device ch_shmem; program needs
>> device ch_p4
>> /home/fetchinson/mpich32shmem/bin/mpirun.ch_shmem: line 91: 21976
>> Segmentation fault      /home/fetchinson/test "testinput"
>>
>> Any ideas?
>> Daniel
>>
>>
>>
>> >> > Did you recompile the program? Make sure you use the mpicc
>> >> from this
>> >> > build and not some other mpicc from another directory. Give
>> >> the full
>> >> > path if necessary.
>> >> >
>> >> > Rajeev
>> >>
>> >> Yes, I did recompile the program using mpicc from the newly
>> >> built mpi library. Actually, there is only one mpicc on the
>> >> whole machine.
>> >>
>> >> Cheers,
>> >> Daniel
>> >>
>> >>
>> >>
>> >> >> Actually, I spoke a bit too soon. Configure, make, make
>> >> install all
>> >> >> work but the code still doesn't run, saying:
>> >> >>
>> >> >> 0 - MPI_INIT : MPIRUN chose the wrong device ch_shmem;
>> >> program needs
>> >> >> device ch_p4
>> >> >> /home/fetchinson/mpi32shmem/bin/mpirun.ch_shmem: line 91: 17761
>> >> >> Segmentation fault      /home/fetchinson/test "testinput"
>> >> >>
>> >> >> The exact same code runs on another machine where someone else
>> >> >> installed a 32-bit shmem mpich1 library, I'm trying to do
>> >> the same on
>> >> >> a different machine now. It's an intel quad core so I
>> suppose the
>> >> >> shmem device should work. The configure options I used for
>> >> compiling
>> >> >> are
>> >> >>
>> >> >> export CC='gcc -m32'
>> >> >> export F77='g77 -m32'
>> >> >> ./configure  --with-device=ch_shmem
>> >> >>
>> >> >> Do I need to specify the --with-arch option? Going through
>> >> the list
>> >> >> of available --with-arch options I'm not sure what I need for an
>> >> >> Intel(R)
>> >> >> Core(TM)2 Quad CPU Q6600 @ 2.40GHz.
>> >> >>
>> >> >> What am I doing wrong?
>> >> >>
>> >> >> Cheers,
>> >> >> Daniel
>> >> >>
>> >> >>
>> >> >>
>> >> >> > Thanks Anthony, that worked!
>> >> >> >
>> >> >> > Concerning MPICH2: I'm not in a position to change the
>> >> >> communication
>> >> >> > routines in the code  I use so this would only be an option
>> >> >> if MPICH2
>> >> >> > is fully backward compatible with MPICH1. Is this the case?
>> >> >> Can I just
>> >> >> > start using MPICH2 without changing anything in the code if
>> >> >> it works
>> >> >> > with MPICH1?
>> >> >> >
>> >> >> > Cheers,
>> >> >> > Daniel
>> >> >> >
>> >> >> >
>> >> >> >> Since you are using MPICH-1, you can try setting CC,
>> F77 and F90
>> >> >> >>
>> >> >> >> CC="gcc -m32"
>> >> >> >> F77="g77 -m32"
>> >> >> >> ....
>> >> >> >>
>> >> >> >> BTW, can you use MPICH2 instead ?  We have shifted all our
>> >> >> >> development effort to MPICH2 which is more robust than
>> >> >> MPICH-1.  If
>> >> >> >> you are using MPICH2, setting CFLAGS and FFLAGS should
>> >> >> work, and you
>> >> >> >> can use nemesis which shared memory for intranode
>> communication.
>> >> >> >>
>> >> >> >> A.Chan
>> >> >> >>
>> >> >> >> ----- "Daniel Fetchinson" <fetchinson at googlemail.com> wrote:
>> >> >> >>
>> >> >> >>> Hi folks,
>> >> >> >>>
>> >> >> >>> I'd like to build the 32-bit shmem mpi library because
>> >> >> the code I'll
>> >> >> >>> use with mpi only works in 32-bit because of some
>> >> 32-bit specific
>> >> >> >>> assembly code. The machine is a 64-bit machine with a
>> >> >> 64-bit linux
>> >> >> >>> distribution (suse).
>> >> >> >>>
>> >> >> >>> I tried configuring mpich-1.2.7p1 in a number of ways:
>> >> >> >>>
>> >> >> >>> ./configure --with-device=ch_shmem ./configure
>> >> --with-arch=LINUX
>> >> >> >>> --with-device=ch_shmem ./configure
>> >> >> >>> --with-arch=LINUX32 --with-device=ch_shmem ./configure
>> >> >> >>> --with-arch=i386 --with-device=ch_shmem
>> >> >> >>>
>> >> >> >>> with and without setting the following environment
>> >> variables (in
>> >> >> >>> bash):
>> >> >> >>>
>> >> >> >>> export CFLAGS=-m32
>> >> >> >>> export FFLAGS=-m32
>> >> >> >>>
>> >> >> >>> Configuring went all right but none of the above
>> >> >> combinations worked
>> >> >> >>> with 'make' unfortunately :( The error in 'make' is
>> >> the following:
>> >> >> >>>
>> >> >> >>> /home/fetchinson/mpich-1.2.7p1/bin/mpicc  -o overtake
>> >> overtake.o
>> >> >> >>> test.o
>> >> >> >>>
>> >> >> /usr/lib64/gcc/x86_64-suse-linux/4.2.1/../../../../x86_64-suse
>> >> >> -linux/bin/ld:
>> >> >> >>> skipping incompatible
>> >> >> /home/fetchinson/mpich-1.2.7p1/lib/libmpich.a
>> >> >> >>> when searching for -lmpich
>> >> >> >>>
>> >> >> /usr/lib64/gcc/x86_64-suse-linux/4.2.1/../../../../x86_64-suse
>> >> >> -linux/bin/ld:
>> >> >> >>> cannot find -lmpich
>> >> >> >>> collect2: ld returned 1 exit status
>> >> >> >>> make[4]: *** [overtake] Error 1
>> >> >> >>> make[3]: [linktest1] Error 2 (ignored) Could not link
>> >> a C program
>> >> >> >>> with MPI libraries
>> >> >> >>> make[3]: *** [linktest1] Error 1
>> >> >> >>> make[2]: *** [linktest] Error 2
>> >> >> >>> make[1]: *** [mpi-lib-test] Error 2
>> >> >> >>> make: *** [mpi] Error 2
>> >> >> >>>
>> >> >> >>> Which makes me believe that I was not able to convince the
>> >> >> >>> compiler/linker/etc that I really want everything in 32-bit.
>> >> >> >>>
>> >> >> >>> What would be the correct way of compiling the whole mpi
>> >> >> library to
>> >> >> >>> 32-bit?
>> >> >> >>>
>> >> >> >>> Cheers,
>> >> >> >>> Daniel
>> >> >> >>
>> >> >> >>
>> >> >> >
>> >> >> >
>> >> >> > --
>> >> >> > Psss, psss, put it down! - http://www.cafepress.com/putitdown
>> >> >> >
>> >> >>
>> >> >>
>> >> >> --
>> >> >> Psss, psss, put it down! - http://www.cafepress.com/putitdown
>> >> >>
>> >> >>
>> >> >
>> >> >
>> >>
>> >>
>> >> --
>> >> Psss, psss, put it down! - http://www.cafepress.com/putitdown
>> >>
>> >>
>> >
>> >
>>
>>
>> --
>> Psss, psss, put it down! - http://www.cafepress.com/putitdown
>>
>>
>
>


-- 
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