[MOAB-dev] [Nek5000-users] MOAB partitioning

[Vijay S. Mahadevan]

Ah I see. I recently merge a PR to fix precisely this issue.

https://bitbucket.org/fathomteam/moab/pull-requests/157/fix-metis-partitioner-for-serial-builds/diff

I can backport the fix to moab-4.8.2 if you prefer that. Or you could
directly use MOAB master from Bitbucket
(https://bitbucket.org/fathomteam/moab/overview).

Vijay

On Thu, Nov 5, 2015 at 2:00 PM, Popov, Emilian L. <popove at ornl.gov> wrote:
> Apparently I've sent you the config log instead of make log. Here it is, complains form 'mpi.h'
>
> Thanks,
> -emilian
>
> -----Original Message-----
> From: Vijay S. Mahadevan [mailto:vijay.m at gmail.com]
> Sent: Thursday, November 05, 2015 12:49 PM
> To: Popov, Emilian L.
> Cc: moab-dev at mcs.anl.gov
> Subject: Re: [MOAB-dev] [Nek5000-users] MOAB partitioning
>
> Emilian, I don't see what is the problem anymore. MOAB successfully configured according to your logs and mbpart will be built with Metis support. From your output:
>
> METIS_INC_FLAGS='-I/home/owp/METIS/metis-5.1.0/include'
> METIS_LIBS='-L/home/owp/METIS/metis-5.1.0 -lmetis'
> #define HAVE_METIS 1
>
> So I don't see any issues here. Send us the error output from make ?
>
> Vijay
>
> On Thu, Nov 5, 2015 at 11:39 AM, Popov, Emilian L. <popove at ornl.gov> wrote:
>> Hello Vijay,
>>
>>
>>
>> Is there any resolution on the below.
>>
>>
>>
>> Thanks,
>>
>> -emilian
>>
>>
>>
>> From: nek5000-users-bounces at lists.mcs.anl.gov
>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>> nek5000-users at lists.mcs.anl.gov
>> Sent: Tuesday, October 27, 2015 2:59 PM
>> To: nek5000-users at lists.mcs.anl.gov; moab-dev at mcs.anl.gov
>>
>> Subject: Re: [Nek5000-users] MOAB partitioning
>>
>>
>>
>> Emilian,
>>
>>
>>
>> Let's fix the MOAB related issues first on the MOAB mailing list.
>> Please send us your config.log file so that we can provide pointers to
>> fix the configuration problems. Once this is done, we can revisit NEK-MOAB.
>>
>>
>>
>> Vijay
>>
>> On Monday, October 26, 2015, <nek5000-users at lists.mcs.anl.gov> wrote:
>>
>> Vijay,
>>
>> I downloaded moab-4.8.2 and configured and then ran ‘make’, but am
>> getting errors from missing ‘mpi.h’ and metis.h, perhaps the
>> configuration is not OK?
>>
>>
>>
>>
>>
>> Thanks,
>>
>> -emilian
>>
>>
>>
>> From: nek5000-users-bounces at lists.mcs.anl.gov
>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>> nek5000-users at lists.mcs.anl.gov
>> Sent: Friday, October 23, 2015 12:24 PM
>> To: nek5000-users at lists.mcs.anl.gov
>> Subject: Re: [Nek5000-users] MOAB partitioning
>>
>>
>>
>> What version of MOAB are you using ? It should be available with the
>> last MOAB 4.8.2 release [1] I think. Let us know if you have problems.
>>
>>
>>
>> Vijay
>>
>>
>>
>> [1] http://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2.tar.gz
>>
>>
>> On Friday, October 23, 2015, <nek5000-users at lists.mcs.anl.gov> wrote:
>>
>> Thanks Vijay, however the option ‘—with-metis’ does not seem to exist,
>> please advice.
>>
>>
>>
>>
>>
>> -emilian
>>
>>
>>
>> From: nek5000-users-bounces at lists.mcs.anl.gov
>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>> nek5000-users at lists.mcs.anl.gov
>> Sent: Friday, October 23, 2015 11:35 AM
>> To: nek5000-users at lists.mcs.anl.gov
>> Subject: Re: [Nek5000-users] MOAB partitioning
>>
>>
>>
>> Emilian,
>>
>>
>>
>> If you want the partitioner tools, you need to configure MOAB with
>> either metis (--with-metis=DIR) or with zoltan and optionally
>> parmetis. Let us know if you have questions. The metis installation
>> route is extremely straightforward and you should not encounter any issues.
>>
>>
>>
>> Vijay
>>
>> On Friday, October 23, 2015, <nek5000-users at lists.mcs.anl.gov> wrote:
>>
>> Dear Nek/Moab users,
>>
>>
>>
>> I built Moab, but in the bin folder the ‘mbpart’ code is missing and I
>> need it to partition an .h5m mesh file for Nek.
>>
>>
>>
>> Any suggestions?
>>
>>
>>
>> Thanks,
>>
>> -emilian
>>
>>
>