[MOAB-dev] [Nek5000-users] MOAB partitioning

[Vijay S. Mahadevan]

If you are still interested in a patched tarball, its available at

ftp://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2p1.tar.gz

Let me know if this fixes your issues. Thanks.

Vijay

On Thu, Nov 5, 2015 at 2:27 PM, Vijay S. Mahadevan <vijay.m at gmail.com> wrote:
> Ah I see. I recently merge a PR to fix precisely this issue.
>
> https://bitbucket.org/fathomteam/moab/pull-requests/157/fix-metis-partitioner-for-serial-builds/diff
>
> I can backport the fix to moab-4.8.2 if you prefer that. Or you could
> directly use MOAB master from Bitbucket
> (https://bitbucket.org/fathomteam/moab/overview).
>
> Vijay
>
> On Thu, Nov 5, 2015 at 2:00 PM, Popov, Emilian L. <popove at ornl.gov> wrote:
>> Apparently I've sent you the config log instead of make log. Here it is, complains form 'mpi.h'
>>
>> Thanks,
>> -emilian
>>
>> -----Original Message-----
>> From: Vijay S. Mahadevan [mailto:vijay.m at gmail.com]
>> Sent: Thursday, November 05, 2015 12:49 PM
>> To: Popov, Emilian L.
>> Cc: moab-dev at mcs.anl.gov
>> Subject: Re: [MOAB-dev] [Nek5000-users] MOAB partitioning
>>
>> Emilian, I don't see what is the problem anymore. MOAB successfully configured according to your logs and mbpart will be built with Metis support. >From your output:
>>
>> METIS_INC_FLAGS='-I/home/owp/METIS/metis-5.1.0/include'
>> METIS_LIBS='-L/home/owp/METIS/metis-5.1.0 -lmetis'
>> #define HAVE_METIS 1
>>
>> So I don't see any issues here. Send us the error output from make ?
>>
>> Vijay
>>
>> On Thu, Nov 5, 2015 at 11:39 AM, Popov, Emilian L. <popove at ornl.gov> wrote:
>>> Hello Vijay,
>>>
>>>
>>>
>>> Is there any resolution on the below.
>>>
>>>
>>>
>>> Thanks,
>>>
>>> -emilian
>>>
>>>
>>>
>>> From: nek5000-users-bounces at lists.mcs.anl.gov
>>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>>> nek5000-users at lists.mcs.anl.gov
>>> Sent: Tuesday, October 27, 2015 2:59 PM
>>> To: nek5000-users at lists.mcs.anl.gov; moab-dev at mcs.anl.gov
>>>
>>> Subject: Re: [Nek5000-users] MOAB partitioning
>>>
>>>
>>>
>>> Emilian,
>>>
>>>
>>>
>>> Let's fix the MOAB related issues first on the MOAB mailing list.
>>> Please send us your config.log file so that we can provide pointers to
>>> fix the configuration problems. Once this is done, we can revisit NEK-MOAB.
>>>
>>>
>>>
>>> Vijay
>>>
>>> On Monday, October 26, 2015, <nek5000-users at lists.mcs.anl.gov> wrote:
>>>
>>> Vijay,
>>>
>>> I downloaded moab-4.8.2 and configured and then ran ‘make’, but am
>>> getting errors from missing ‘mpi.h’ and metis.h, perhaps the
>>> configuration is not OK?
>>>
>>>
>>>
>>>
>>>
>>> Thanks,
>>>
>>> -emilian
>>>
>>>
>>>
>>> From: nek5000-users-bounces at lists.mcs.anl.gov
>>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>>> nek5000-users at lists.mcs.anl.gov
>>> Sent: Friday, October 23, 2015 12:24 PM
>>> To: nek5000-users at lists.mcs.anl.gov
>>> Subject: Re: [Nek5000-users] MOAB partitioning
>>>
>>>
>>>
>>> What version of MOAB are you using ? It should be available with the
>>> last MOAB 4.8.2 release [1] I think. Let us know if you have problems.
>>>
>>>
>>>
>>> Vijay
>>>
>>>
>>>
>>> [1] http://ftp.mcs.anl.gov/pub/fathom/moab-4.8.2.tar.gz
>>>
>>>
>>> On Friday, October 23, 2015, <nek5000-users at lists.mcs.anl.gov> wrote:
>>>
>>> Thanks Vijay, however the option ‘—with-metis’ does not seem to exist,
>>> please advice.
>>>
>>>
>>>
>>>
>>>
>>> -emilian
>>>
>>>
>>>
>>> From: nek5000-users-bounces at lists.mcs.anl.gov
>>> [mailto:nek5000-users-bounces at lists.mcs.anl.gov] On Behalf Of
>>> nek5000-users at lists.mcs.anl.gov
>>> Sent: Friday, October 23, 2015 11:35 AM
>>> To: nek5000-users at lists.mcs.anl.gov
>>> Subject: Re: [Nek5000-users] MOAB partitioning
>>>
>>>
>>>
>>> Emilian,
>>>
>>>
>>>
>>> If you want the partitioner tools, you need to configure MOAB with
>>> either metis (--with-metis=DIR) or with zoltan and optionally
>>> parmetis. Let us know if you have questions. The metis installation
>>> route is extremely straightforward and you should not encounter any issues.
>>>
>>>
>>>
>>> Vijay
>>>
>>> On Friday, October 23, 2015, <nek5000-users at lists.mcs.anl.gov> wrote:
>>>
>>> Dear Nek/Moab users,
>>>
>>>
>>>
>>> I built Moab, but in the bin folder the ‘mbpart’ code is missing and I
>>> need it to partition an .h5m mesh file for Nek.
>>>
>>>
>>>
>>> Any suggestions?
>>>
>>>
>>>
>>> Thanks,
>>>
>>> -emilian
>>>
>>>
>>