[MOAB-dev] pytaps: can't import iBase and iMesh
Huayi Wei
huayiwei1984 at gmail.com
Tue Jun 10 07:47:56 CDT 2014
Hi, Paul,
My MOAB's version is bd52ba12517416f4b6d2162696a41583b73d52ed, and
PyTAPS 's version is 257bf8f93f29e0b1a2269ee94672db19480c9c5c ( the
master branch).
Best
Huayi
On 2014?06?10? 20:23, Paul Wilson wrote:
> Hi all,
>
> Maybe I missed this piece of the thread, but I wonder if this could be
> a poorly/un-documented version mismatch problem?
>
> Which version of MOAB and PyTAPS are you using?
>
> Paul
>
>
> On 06/09/2014 10:39 PM, Huayi Wei wrote:
>>
>> when I launch python, and import iBase and iMesh, the output like this:
>>
>> |why at why-XPS-15-9530:~$ python
>> Python 2.7.6 (default, Mar 22 2014, 22:59:56)
>> [GCC 4.8.2] on linux2
>> Type "help", "copyright", "credits" or "license" for more information.
>> >>> from itaps import iBase, iMesh
>> Traceback (most recent call last):
>> File "<stdin>", line 1, in <module>
>> ImportError: /usr/local/lib/python2.7/dist-packages/PyTAPS-1.4-py2.7-linux-x86_64.egg/itaps/iMesh.so: undefined symbol: imesh_getentities_
>> >>>
>> |
>>
>> Huayi
>>
>> On 2014å¹´06æoe^10æ---¥ 11:35, Huayi Wei wrote:
>>
>>> I put it into /etc/bash.bashrc, like following:
>>>
>>> export
>>> LD_LIBRARY_PATH=/home/why/software/itaps/parallel-shared/lib:$LD_LIBRARY_PATH
>>>
>>> Huayi
>>>
>>> On 2014å¹´06æoe^10æ---¥ 11:25, Anthony Scopatz wrote:
>>>> Did you export it or just put in in the env?
>>>>
>>>>
>>>> On Mon, Jun 9, 2014 at 10:24 PM, Huayi Wei <huayiwei1984 at gmail.com
>>>> <mailto:huayiwei1984 at gmail.com>> wrote:
>>>>
>>>> I put it in env, here is my setting:
>>>>
>>>> |env | grep 'LD'
>>>> LD_LIRARY_PATH=/home/why/software/itaps/parallel-shared/lib
>>>> |
>>>>
>>>> But the problem is still there.
>>>>
>>>> Best
>>>>
>>>> Huayi
>>>>
>>>> On 2014å¹´06æoe^10æ---¥ 10:54, Huayi Wei wrote:
>>>>
>>>>> Hi, Anthony,
>>>>> Thanks for your reply. Now I rebuild cgm/moab/lasso with
>>>>> âEUR"enable-shared option, but I still have the same problem.
>>>>> Here is the content of my |setup.cfg| in pytaps dir:
>>>>>
>>>>> |[global]
>>>>> iMesh-path = /home/why/software/itaps/parallel-shared
>>>>> iGeom-path = /home/why/software/itaps/parallel-shared
>>>>> iRel-path = /home/why/software/itaps/parallel-shared
>>>>> [egg_info]
>>>>> tag_build =
>>>>> tag_date = 0
>>>>> tag_svn_revision = 0
>>>>> [build_ext]
>>>>> include-dirs = /home/why/software/itaps/parallel-shared/include
>>>>> |
>>>>>
>>>>> The following is the output of the command |sudo python
>>>>> setup.py install|
>>>>>
>>>>> |[sudo] password for why:
>>>>> running install
>>>>> running bdist_egg
>>>>> running egg_info
>>>>> writing requirements to PyTAPS.egg-info/requires.txt
>>>>> writing PyTAPS.egg-info/PKG-INFO
>>>>> writing top-level names to PyTAPS.egg-info/top_level.txt
>>>>> writing dependency_links to PyTAPS.egg-info/dependency_links.txt
>>>>> reading manifest file 'PyTAPS.egg-info/SOURCES.txt'
>>>>> writing manifest file 'PyTAPS.egg-info/SOURCES.txt'
>>>>> installing library code to build/bdist.linux-x86_64/egg
>>>>> running install_lib
>>>>> running build_py
>>>>> running build_ext
>>>>> Checking for usability of iRel...
>>>>> cc -I/home/why/software/itaps/parallel-shared/include -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -c iRel.c -o iRel.o
>>>>> Checking for usability of iMesh...
>>>>> cc -I/home/why/software/itaps/parallel-shared/include -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -c iMesh.c -o iMesh.o
>>>>> Checking for usability of iGeom...
>>>>> cc -I/home/why/software/itaps/parallel-shared/include -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -c iGeom.c -o iGeom.o
>>>>> Checking for usability of iMesh...
>>>>> cc -I/home/why/software/itaps/parallel-shared/include -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -c iMesh.c -o iMesh.o
>>>>> creating build/bdist.linux-x86_64/egg
>>>>> creating build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/iRel.so -> build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/iMesh.so -> build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/iMeshExtensions.so -> build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/iGeom.so -> build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/helpers.py -> build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/iBase.so -> build/bdist.linux-x86_64/egg/itaps
>>>>> copying build/lib.linux-x86_64-2.7/itaps/__init__.py -> build/bdist.linux-x86_64/egg/itaps
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/helpers.py to helpers.pyc
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/__init__.py to __init__.pyc
>>>>> creating stub loader for itaps/iBase.so
>>>>> creating stub loader for itaps/iRel.so
>>>>> creating stub loader for itaps/iMesh.so
>>>>> creating stub loader for itaps/iGeom.so
>>>>> creating stub loader for itaps/iMeshExtensions.so
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/iBase.py to iBase.pyc
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/iRel.py to iRel.pyc
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/iMesh.py to iMesh.pyc
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/iGeom.py to iGeom.pyc
>>>>> byte-compiling build/bdist.linux-x86_64/egg/itaps/iMeshExtensions.py to iMeshExtensions.pyc
>>>>> creating build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> installing scripts to build/bdist.linux-x86_64/egg/EGG-INFO/scripts
>>>>> running install_scripts
>>>>> running build_scripts
>>>>> creating build/bdist.linux-x86_64/egg/EGG-INFO/scripts
>>>>> copying build/scripts-2.7/tagviewer -> build/bdist.linux-x86_64/egg/EGG-INFO/scripts
>>>>> changing mode of build/bdist.linux-x86_64/egg/EGG-INFO/scripts/tagviewer to 755
>>>>> copying PyTAPS.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> copying PyTAPS.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> copying PyTAPS.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> copying PyTAPS.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> copying PyTAPS.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> copying PyTAPS.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
>>>>> writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
>>>>> creating 'dist/PyTAPS-1.4-py2.7-linux-x86_64.egg' and adding 'build/bdist.linux-x86_64/egg' to it
>>>>> removing 'build/bdist.linux-x86_64/egg' (and everything under it)
>>>>> Processing PyTAPS-1.4-py2.7-linux-x86_64.egg
>>>>> removing '/usr/local/lib/python2.7/dist-packages/PyTAPS-1.4-py2.7-linux-x86_64.egg' (and everything under it)
>>>>> creating /usr/local/lib/python2.7/dist-packages/PyTAPS-1.4-py2.7-linux-x86_64.egg
>>>>> Extracting PyTAPS-1.4-py2.7-linux-x86_64.egg to /usr/local/lib/python2.7/dist-packages
>>>>> PyTAPS 1.4 is already the active version in easy-install.pth
>>>>> Installing tagviewer script to /usr/local/bin
>>>>>
>>>>> Installed /usr/local/lib/python2.7/dist-packages/PyTAPS-1.4-py2.7-linux-x86_64.egg
>>>>> Processing dependencies for PyTAPS==1.4
>>>>> Searching for numpy==1.8.1
>>>>> Best match: numpy 1.8.1
>>>>> numpy 1.8.1 is already the active version in easy-install.pth
>>>>>
>>>>> Using /usr/lib/python2.7/dist-packages
>>>>> Finished processing dependencies for PyTAPS==1.4
>>>>> |
>>>>>
>>>>> In the output, I donâEUR^(TM)t see any information about
>>>>> linking iMesh.so with MOAB / iGeom.so with CGM / iRel.so with
>>>>> Lasso.
>>>>> Best
>>>>> Huayi
>>>>>
>>>>> âEUR<
>>>> âEUR<
>>>>
>>>>
>>>
>> âEUR<
>
> --
> -- ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ --
> Paul Wilson ~ UW-Madison ~ 608-263-0807 ~ cal:http://bit.ly/pphw-cal
> Professor, Engineering Physics. ~http://cnerg.engr.wisc.edu
> Faculty Director, Advanced Computing Infrastructure
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