[MOAB-dev] Build failed in Jenkins: moab32par #418
jenkins-ci at mcs.anl.gov
jenkins-ci at mcs.anl.gov
Sun May 11 00:12:42 CDT 2014
See <https://jenkins-ci.mcs.anl.gov/job/moab32par/418/>
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[...truncated 1051 lines...]
PASS: gmsh_test
PASS: nastran_test
FAIL: read_nc
FAIL: read_ucd_nc
FAIL: read_mpas_nc
FAIL: write_nc
FAIL: read_gcrm_nc
PASS: ideas_test
PASS: stl_test
PASS: smf_test
PASS: read_cgm_load_test
PASS: read_cgm_basic_test
PASS: read_cgm_senses_test
PASS: read_cgm_connectivity_test
PASS: read_cgm_group_test
==========================
6 of 20 tests failed
See test/io/test-suite.log
==========================
make[4]: *** [test-suite.log] Error 1
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make[3]: *** [check-TESTS] Error 2
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make[2]: *** [check-am] Error 2
make[2]: Target `check' not remade because of errors.
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Making check in dual
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make dual_test
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o dual_test dual_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o dual_test dual_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dual'>
make check-TESTS
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PASS: dual_test
=============
1 test passed
=============
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Making check in obb
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make obb_test obb_time obb_tree_tool
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o obb_test obb_test.o ../../src/libMOAB.la -lm
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o obb_time obb_time.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o obb_time obb_time.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o obb_tree_tool obb_tree_tool.o ../../src/libMOAB.la -lm
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PASS: obb_test
=============
1 test passed
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/bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o tree_searching_perf tree_searching_perf.o ../../../src/libMOAB.la -lm
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make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/perf/point_location'>
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make perf seqperf adj_time perftool tstt_perf_binding
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libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o perf perf.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L./src/mpl -L./src/openpa/src ../../itaps/imesh/.libs/libiMesh.a <https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src/.libs/libMOAB.a> /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
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libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o adj_time adj_time.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L./src/mpl -L./src/openpa/src ../../itaps/imesh/.libs/libiMesh.a <https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src/.libs/libMOAB.a> /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o perftool perftool.o ../../src/libMOAB.la ../../itaps/imesh/libiMesh.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o perftool perftool.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L./src/mpl -L./src/openpa/src ../../itaps/imesh/.libs/libiMesh.a <https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/src/.libs/libMOAB.a> /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/include -I/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -isystem /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -I../../src -I../../src/io/mhdf/include -I../../src -DIS_BUILDING_MB -I../../itaps/imesh -I../../itaps -I../../itaps -I../../itaps/imesh -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT tstt_perf_binding.o -MD -MP -MF .deps/tstt_perf_binding.Tpo -c -o tstt_perf_binding.o tstt_perf_binding.cpp
mv -f .deps/tstt_perf_binding.Tpo .deps/tstt_perf_binding.Po
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make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/perf'>
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Making check in dagmc
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
make dagmc_simple_test dagmc_rayfire_test dagmc_pointinvol_test
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
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make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
make check-TESTS
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make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
PASS: dagmc_simple_test
PASS: dagmc_rayfire_test
PASS: dagmc_pointinvol_test
==================
All 3 tests passed
==================
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/dagmc'>
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Making check in h5file
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make h5test h5legacy h5varlen h5sets_test h5regression h5partial h5portable dump_sets
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5varlen h5varlen.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5varlen h5varlen.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5sets_test h5sets_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5sets_test h5sets_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5regression h5regression.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o h5regression h5regression.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5partial h5partial.o ../../src/libMOAB.la -lm
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o h5portable h5portable.o ../../src/libMOAB.la -lm
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make[3]: `dump_sets' is up to date.
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make check-TESTS
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
FAIL: h5test
PASS: h5legacy
FAIL: h5varlen
FAIL: h5sets_test
FAIL: h5regression
FAIL: h5partial
FAIL: h5portable
==============================
6 of 7 tests failed
See test/h5file/test-suite.log
==============================
make[4]: *** [test-suite.log] Error 1
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make[3]: *** [check-TESTS] Error 2
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
make[2]: *** [check-am] Error 2
make[2]: Target `check' not remade because of errors.
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/h5file'>
Making check in parallel
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make pcomm_unit parallel_unit_tests uber_parallel_test scdtest pcomm_serial par_spatial_locator_test scdpart read_nc_par ucdtrvpart mpastrvpart gcrm_par parallel_hdf5_test mhdf_parallel parallel_write_test mbparallelcomm_test partcheck structured3 parmerge
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o scdpart scdpart.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o scdpart scdpart.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o read_nc_par read_nc.o ../../src/libMOAB.la -lm
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o ucdtrvpart ucdtrvpart.o ../../src/libMOAB.la -lm
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/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o mpastrvpart mpastrvpart.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mpastrvpart mpastrvpart.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o gcrm_par gcrm_par.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o gcrm_par gcrm_par.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parallel_hdf5_test parallel_hdf5_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o parallel_hdf5_test parallel_hdf5_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CC --mode=link mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o mhdf_parallel mhdf_parallel.o ../../src/libMOAB.la -lhdf5 -lm
libtool: link: mpicc -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mhdf_parallel mhdf_parallel.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -lz -lm -pthread -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parallel_write_test parallel_write_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o parallel_write_test parallel_write_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o mbparallelcomm_test mbparallelcomm_test.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mbparallelcomm_test mbparallelcomm_test.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o partcheck partcheck.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o partcheck partcheck.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o structured3 structured3.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o structured3 structured3.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o parmerge parmerge.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o parmerge parmerge.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make check-TESTS
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make[4]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
FAIL: pcomm_unit
FAIL: parallel_unit_tests
FAIL: uber_parallel_test
FAIL: scdtest
FAIL: pcomm_serial
FAIL: par_spatial_locator_test
FAIL: scdpart
FAIL: read_nc_par
FAIL: ucdtrvpart
FAIL: mpastrvpart
FAIL: gcrm_par
FAIL: parallel_hdf5_test
FAIL: mhdf_parallel
FAIL: parallel_write_test
================================
14 of 14 tests failed
See test/parallel/test-suite.log
================================
make[4]: *** [test-suite.log] Error 1
make[4]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make[3]: *** [check-TESTS] Error 2
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
make[2]: *** [check-am] Error 2
make[2]: Target `check' not remade because of errors.
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/parallel'>
Making check in oldinc
make[2]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
make test_oldinc
make[3]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
/bin/sh ../../libtool --tag=CXX --mode=link mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/homes/fathom/lib32/jenkins/cgm/lib -R/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -lnetcdf -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -o test_oldinc test_oldinc.o ../../src/libMOAB.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o test_oldinc test_oldinc.o -L/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -L/homes/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib -L/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -L/homes/fathom/lib32/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin ../../src/.libs/libMOAB.a /home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib/libhdf5.so -L/home/fathom/3rdparty/lib32/zlib-1.2.4/gcc/lib /homes/fathom/lib32/jenkins/cgm/lib/libcgm.a -L./src/mpl -L./src/openpa/src /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpichcxx.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpich.so -lrt /homes/fathom/lib32/mpich2-1.5_gcc/lib/libopa.so /homes/fathom/lib32/mpich2-1.5_gcc/lib/libmpl.so -lcubiti19 /homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib/libnetcdf.so -lz /usr/lib/i386-linux-gnu/libcurl.so /usr/lib/openmpi/lib/libmpi_cxx.so /usr/lib/openmpi/lib/libmpi.so /usr/lib/openmpi/lib/libopen-rte.so /usr/lib/openmpi/lib/libopen-pal.so -lm -pthread -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/home/fathom/3rdparty/lib32/hdf5-1.8.8-par-gcc/lib -Wl,-rpath -Wl,/homes/fathom/lib32/mpich2-1.5_gcc/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/lib32/netcdf-4.1.3_gcc/lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,-rpath -Wl,/homes/fathom/lib32/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit32/Cubit-12.2/bin
make[3]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
make[2]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test/oldinc'>
make[1]: *** [check-recursive] Error 1
make[1]: Target `check' not remade because of errors.
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/test'>
Making check in doc
make[1]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/doc'>
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/doc'>
make[1]: Entering directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/'>
make[1]: Leaving directory `<https://jenkins-ci.mcs.anl.gov/job/moab32par/ws/'>
make: *** [check-recursive] Error 1
make: Target `check' not remade because of errors.
Build step 'Execute shell' marked build as failure
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