[MOAB-dev] [Nek5000-users] Running MOAB example

Tim Tautges tautges at mcs.anl.gov
Wed Sep 11 12:30:38 CDT 2013



On 09/11/2013 12:10 PM, Iulian Grindeanu wrote:
>
>
> ------------------------------------------------------------------------------------------------------------------------
>
>     Aha, good catch.
>
>     Iulian, could you backport the imesh_freememory function?  Thanks.
>
> Hello,
> The Version 4.6 was released on February 11. The link to the tar ball is in the web page.
> http://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB
>
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6.0.tar.gz
> (so this is the official release 4.6)
>
> The current Version4.6 branch, in the git repository, already has the free memory function backported.
> That tarball is updated nightly, and you can get it from this link (on the moab wiki page too)
>
> http://ftp.mcs.anl.gov/pub/fathom/moab-4.6-nightly.tar.gz
>
> Is this what they need?
>

Ok, yes, that's what they need, thanks.

- tim

> Thanks,
> Iulian
>
>     - tim
>
>     On 09/11/2013 11:33 AM, Vijay S. Mahadevan wrote:
>      > The linker error is because of your version mismatch. You need to
>      > update your moab to the latest version. I see you are using v4.6 now.
>      > You should be able to use the dev version from
>      > https://bitbucket.org/fathomteam/moab with git or download the newer
>      > patch from https://trac.mcs.anl.gov/projects/ITAPS/wiki/MOAB.
>      >
>      > Tim, can we create a new patched version of the release for download.
>      > I spoke to Rajeev about this some time back but we need to decide what
>      > fixes to backport.
>      >
>      > Vijay
>      >
>      > On Wed, Sep 11, 2013 at 11:20 AM,  <nek5000-users at lists.mcs.anl.gov> wrote:
>      >>
>      >> Yes , I am using gnu, and whwen I add USR_LFLAGS="-lmpi_cxx -lstdc++,
>      >> I get this,
>      >> makenek - automatic build tool for Nek5000
>      >> generating makefile ...
>      >> mpif77 -c  -O2 -fdefault-real-8 -x f77-cpp-input -fcray-pointer -DMOAB
>      >> -DPTRSIZE8 -DMPI -DLONGINT8 -DUNDERSCORE -DGLOBAL_LONG_LONG
>      >> -I/home/amirreza/nek5_svn/amirreza_test/examples/moab
>      >> -I/home/amirreza/nek5_svn/trunk/nek -I./
>      >> /home/amirreza/nek5_svn/amirreza_test/examples/moab/pipe.f
>      >> -I/home/amirreza/nek5_svn/trunk/nek/3rd_party
>      >> -I/home/amirreza/Amirreza/moab-4.6.0/gcc/include  -o obj/pipe.o
>      >> mpif77 -o nek5000  obj/pipe.o obj/drive.o obj/drive1.o obj/drive2.o
>      >> obj/plan4.o obj/bdry.o obj/coef.o obj/conduct.o obj/connect1.o
>      >> obj/connect2.o obj/dssum.o obj/edgec.o obj/eigsolv.o obj/gauss.o
>      >> obj/genxyz.o obj/navier1.o obj/makeq.o obj/navier0.o obj/navier2.o
>      >> obj/navier3.o obj/navier4.o obj/prepost.o obj/speclib.o obj/map2.o
>      >> obj/turb.o obj/mvmesh.o obj/ic.o obj/ssolv.o obj/planx.o obj/math.o
>      >> obj/mxm_wrapper.o obj/hmholtz.o obj/gfdm_par.o obj/gfdm_op.o
>      >> obj/gfdm_solve.o obj/subs1.o obj/subs2.o obj/genbox.o obj/gmres.o obj/hsmg.o
>      >> obj/convect.o obj/induct.o obj/perturb.o obj/navier5.o obj/navier6.o
>      >> obj/navier7.o obj/navier8.o obj/fast3d.o obj/fasts.o obj/calcz.o obj/byte.o
>      >> obj/chelpers.o obj/byte_mpi.o obj/postpro.o obj/cvode_driver.o
>      >> obj/nek_comm.o obj/init_plugin.o obj/setprop.o obj/qthermal.o
>      >> obj/cvode_aux.o obj/makeq_aux.o obj/papi.o obj/ssygv.o obj/dsygv.o
>      >> obj/nek_in_situ.o obj/mxm_std.o obj/blas.o obj/moab.o obj/imeshutil.o
>      >> obj/imeshcutil.o obj/comm_mpi.o obj/singlmesh.o obj/jl_gs.o obj/jl_sort.o
>      >> obj/jl_sarray_transfer.o obj/jl_sarray_sort.o obj/jl_gs_local.o
>      >> obj/jl_crystal.o obj/jl_comm.o obj/jl_tensor.o obj/jl_fail.o
>      >> obj/jl_fcrystal.o obj/jl_findpts.o obj/jl_findpts_local.o obj/jl_obbox.o
>      >> obj/jl_poly.o obj/jl_lob_bnd.o obj/jl_findpts_el_3.o obj/jl_findpts_el_2.o
>      >> obj/jl_sparse_cholesky.o obj/jl_xxt.o obj/jl_fcrs.o
>      >> -L/home/amirreza/Amirreza/netcdf-4.1.3/gcc/lib
>      >> -L/home/amirreza/Amirreza/zlib-1.2.5/gcc/lib
>      >> -L/home/amirreza/Amirreza/szip-2.1/gcc/lib
>      >> -L/home/amirreza/Amirreza/hdf5-1.8.11/lib
>      >> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib
>      >> -L/home/amirreza/Amirreza/moab-4.6.0/gcc/lib -liMesh -lMOAB -lnetcdf  -lhdf5
>      >> -lsz   -lm  -lmpi_cxx -lstdc++
>      >> obj/moab.o: In function `nekmoab_intbc_':
>      >> moab.f:(.text+0xe9d): undefined reference to `imesh_freememory_'
>      >> moab.f:(.text+0xece): undefined reference to `imesh_freememory_'
>      >> moab.f:(.text+0xee4): undefined reference to `imesh_freememory_'
>      >> moab.f:(.text+0xf05): undefined reference to `imesh_freememory_'
>      >> obj/moab.o: In function `nekmoab_bc_':
>      >> moab.f:(.text+0x1306): undefined reference to `imesh_freememory_'
>      >>
>      >> collect2: ld returned 1 exit status
>      >> make: *** [nek5000] Error 1
>      >>
>      >> Thanks,
>      >> Ami
>      >>
>      >>
>      >> On Wed, Sep 11, 2013 at 12:05 PM, <nek5000-users at lists.mcs.anl.gov> wrote:
>      >>>
>      >>> It depends which compiler you're using.  Are you using gnu?
>      >>>
>      >>> Please send complete compile output.
>      >>>
>      >>> - tim
>      >>>
>      >>>
>      >>> On 09/11/2013 10:11 AM, nek5000-users at lists.mcs.anl.gov wrote:
>      >>>>
>      >>>> Thanks for your answer, to make sure I have added libraries to makenek
>      >>>> ''USR_LFLAGS="-lmpi_cxx -lstdc++" which I'm
>      >>>> getting same error,so you mean I need to add appropriate fortran library
>      >>>> to USR_LFLAGS?
>      >>>>
>      >>>> Thanks,
>      >>>> Ami
>      >>>>
>      >>>>
>      >>>> On Wed, Sep 11, 2013 at 10:47 AM, <nek5000-users at lists.mcs.anl.gov
>      >>>> <mailto:nek5000-users at lists.mcs.anl.gov>> wrote:
>      >>>>
>      >>>>      Hi Ami,
>      >>>>         That's the C++ runtime.  You have two options:
>      >>>>      1. Link with the C++ compiler; in this case, you'll have to
>      >>>> explicitly add the fortran runtime libraries to the link
>      >>>>      statement, which is most easily done by adding it to USR_LFLAGS in
>      >>>> makenek.  Compiler documents often tell you which
>      >>>>      libraries implement the fortran runtime, usually in a section about
>      >>>> inter-language linking.
>      >>>>
>      >>>>      2. Add the C++ std libs to USR_LFLAGS.  The trunk/nek/makenek file
>      >>>> has a few examples of this method for
>      >>>>      gnu/intel/pgi.  Sometimes, like on BG/x, it can be difficult to
>      >>>> figure out what all comprises the C++ runtime, which
>      >>>>      is why I list 1. above.
>      >>>>
>      >>>>      - tim
>      >>>>
>      >>>>
>      >>>>      On 09/11/2013 09:31 AM, nek5000-users at lists.mcs.anl.__gov
>      >>>> <mailto:nek5000-users at lists.mcs.anl.gov> wrote:
>      >>>>
>      >>>>          Hello Neks,
>      >>>>
>      >>>>          I am trying to run MOAB example with nek5000, but all the time
>      >>>> which I am running, it gives me set of undefined
>      >>>>          reference error. I put an error with last part of my ./makenek
>      >>>> pipe log below.
>      >>>>          What is wrong with my work?
>      >>>>
>      >>>>          IODebugTrack.cpp:(.text+0xb74)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xb7f)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(unsigned long)'
>      >>>>          IODebugTrack.cpp:(.text+0xb8c)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xb97)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(unsigned long)'
>      >>>>          IODebugTrack.cpp:(.text+0xbd3)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xbde)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(unsigned long)'
>      >>>>          IODebugTrack.cpp:(.text+0xbeb)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xbf6)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(unsigned long)'
>      >>>>          IODebugTrack.cpp:(.text+0xc03)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xc0e)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(unsigned long)'
>      >>>>          IODebugTrack.cpp:(.text+0xc1b)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xc26)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(unsigned long)'
>      >>>>          IODebugTrack.cpp:(.text+0xc33)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          IODebugTrack.cpp:(.text+0xc38)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>
>      >>>>          std::endl<char, std::char_traits<char> >(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&)'
>      >>>>          IODebugTrack.cpp:(.text+0xc40)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(std::basic___ostream<char, std::char_traits<char>
>      >>>>> & (*)(std::basic_ostream<char,
>      >>>>          std::char_traits<char> >&))'
>      >>>>          IODebugTrack.cpp:(.text+0xc50)__: undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>           >::flush()'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>          `moab::IODebugTrack::all___reduce()':
>      >>>>          IODebugTrack.cpp:(.text+0xd08)__: undefined reference to
>      >>>> `MPI_Comm_size'
>      >>>>          IODebugTrack.cpp:(.text+0xdfe)__: undefined reference to
>      >>>> `MPI_Gather'
>      >>>>          IODebugTrack.cpp:(.text+__0x1080): undefined reference to
>      >>>> `MPI_Gatherv'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>          `__static_initialization_and___destruction_0(int, int)':
>      >>>>          IODebugTrack.cpp:(.text+__0x1221): undefined reference to
>      >>>> `std::ios_base::Init::Init()'
>      >>>>          IODebugTrack.cpp:(.text+__0x1226): undefined reference to
>      >>>> `std::ios_base::Init::~Init()'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>          `std::list<moab::IODebugTrack:__:DRange,
>      >>>>          std::allocator<moab::__IODebugTrack::DRange>
>      >>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
>      >>>>          moab::IODebugTrack::DRange const&)':
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text.___ZNSt4listIN4moab12IODebugTrack__6DRangeESaIS2_EE9_M___insertESt14_List_iteratorIS2___ERKS2_[std::list<moab::__IODebugTrack::DRange,
>      >>>>          std::allocator<moab::__IODebugTrack::DRange>
>      >>>>> ::_M_insert(std::_List___iterator<moab::IODebugTrack::__DRange>,
>      >>>>
>      >>>>          moab::IODebugTrack::DRange const&)]+0x3a): undefined reference to
>      >>>>
>      >>>> `std::__detail::_List_node___base::_M_hook(std::__detail::___List_node_base*)'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>
>      >>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
>      >>>>            >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
>      >>>> unsigned long)':
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE10deallocateEPS5_m[__gnu___cxx::new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
>      >>>>            >::deallocate(std::_List_node<__moab::IODebugTrack::DRange>*,
>      >>>> unsigned long)]+0x1c): undefined reference to
>      >>>>          `operator
>      >>>>          delete(void*)'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>
>      >>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__allocate(unsigned
>      >>>> long, void const*)':
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
>      >>>>
>      >>>>          long, void const*)]+0x2c): undefined reference to
>      >>>> `std::__throw_bad_alloc()'
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE8allocateEmPKv[__gnu___cxx::new_allocator<moab::__IODebugTrack::DRange>::__allocate(unsigned
>      >>>>
>      >>>>          long, void const*)]+0x45): undefined reference to `operator
>      >>>> new(unsigned long)'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>
>      >>>> `__gnu_cxx::new_allocator<__moab::IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
>      >>>> unsigned
>      >>>>          long)':
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new___allocatorIN4moab12IODebugTrack__6DRangeEE10deallocateEPS3_m[____gnu_cxx::new_allocator<moab::__IODebugTrack::DRange>::__deallocate(moab::IODebugTrack:__:DRange*,
>      >>>>
>      >>>>          unsigned long)]+0x1c): undefined reference to `operator
>      >>>> delete(void*)'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o): In
>      >>>> function
>      >>>>
>      >>>> `__gnu_cxx::new_allocator<std:__:_List_node<moab::__IODebugTrack::DRange>
>      >>>>> ::allocate(unsigned long, void const*)':
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
>      >>>>
>      >>>>            >::allocate(unsigned long, void const*)]+0x2c): undefined
>      >>>> reference to `std::__throw_bad_alloc()'
>      >>>>
>      >>>>
>     IODebugTrack.cpp:(.text._ZN9____gnu_cxx13new_allocatorISt10___List___nodeIN4moab12IODebugTrack6DRan__geEEE8allocateEmPKv[__gnu_cxx:__:new_allocator<std::_List___node<moab::IODebugTrack::__DRange>
>      >>>>
>      >>>>            >::allocate(unsigned long, void const*)]+0x46): undefined
>      >>>> reference to `operator new(unsigned long)'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__IODebugTrack.o):(.eh_frame+__0x24b):
>      >>>> undefined reference to
>      >>>>          `__gxx_personality_v0'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
>      >>>> function
>      >>>>          `moab::operator<<(std::basic___ostream<char,
>      >>>> std::char_traits<char> >&, moab::OrientedBox const&)':
>      >>>>
>      >>>>          OrientedBox.cpp:(.text+0x97): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>          std::operator<<
>      >>>>          <std::char_traits<char> >(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&, char const*)'
>      >>>>          OrientedBox.cpp:(.text+0xaf): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>          std::operator<<
>      >>>>          <std::char_traits<char> >(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&, char const*)'
>      >>>>          OrientedBox.cpp:(.text+0xbc): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>           >::operator<<(double)'
>      >>>>          OrientedBox.cpp:(.text+0xc9): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>          std::operator<<
>      >>>>          <std::char_traits<char> >(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&, char const*)'
>      >>>>          OrientedBox.cpp:(.text+0xe1): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>          std::operator<<
>      >>>>          <std::char_traits<char> >(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&, char const*)'
>      >>>>          OrientedBox.cpp:(.text+0xee): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>           >::operator<<(double)'
>      >>>>          OrientedBox.cpp:(.text+0xfb): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>          std::operator<<
>      >>>>          <std::char_traits<char> >(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&, char const*)'
>      >>>>          OrientedBox.cpp:(.text+0x113): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char> >&
>      >>>>          std::operator<< <std::char_traits<char>
>      >>>>> (std::basic_ostream<char, std::char_traits<char> >&, char const*)'
>      >>>>          OrientedBox.cpp:(.text+0x120): undefined reference to
>      >>>> `std::basic_ostream<char, std::char_traits<char>
>      >>>>            >::operator<<(double)'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
>      >>>> function
>      >>>>          `__static_initialization_and___destruction_0(int, int)':
>      >>>>          OrientedBox.cpp:(.text+0x3aaf)__: undefined reference to
>      >>>> `std::ios_base::Init::Init()'
>      >>>>          OrientedBox.cpp:(.text+0x3ab4)__: undefined reference to
>      >>>> `std::ios_base::Init::~Init()'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o): In
>      >>>> function `moab::ErrorCode
>      >>>>          moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
>      >>>> const&, double*, moab::CartVect*)':
>      >>>>
>      >>>>
>     OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>      >>>>          moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
>      >>>> const&, double*, moab::CartVect*)]+0xb7f):
>      >>>>
>      >>>>          undefined
>      >>>>          reference to `std::cerr'
>      >>>>
>      >>>>
>     OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>      >>>>          moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
>      >>>> const&, double*, moab::CartVect*)]+0xb84):
>      >>>>
>      >>>>          undefined
>      >>>>          reference to `std::basic_ostream<char, std::char_traits<char> >&
>      >>>> std::operator<< <std::char_traits<char>
>      >>>>            >(std::basic_ostream<char, std::char_traits<char> >&, char
>      >>>> const*)'
>      >>>>
>      >>>>
>     OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>      >>>>          moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
>      >>>> const&, double*, moab::CartVect*)]+0xb89):
>      >>>>
>      >>>>          undefined
>      >>>>          reference to `std::basic_ostream<char, std::char_traits<char> >&
>      >>>> std::endl<char, std::char_traits<char>
>      >>>>            >(std::basic_ostream<char, std::char_traits<char> >&)'
>      >>>>
>      >>>>
>     OrientedBox.cpp:(.text.___ZN4moab11EigenDecompINS___7Matrix3ENS_8CartVectEEENS___9ErrorCodeERKT_PdPT0_[moab::__ErrorCode
>      >>>>          moab::EigenDecomp<moab::__Matrix3, moab::CartVect>(moab::Matrix3
>      >>>> const&, double*, moab::CartVect*)]+0xb91):
>      >>>>          undefined
>      >>>>          reference to `std::basic_ostream<char, std::char_traits<char>
>      >>>>> ::operator<<(std::basic___ostream<char,
>      >>>>
>      >>>>          std::char_traits<char> >& (*)(std::basic_ostream<char,
>      >>>> std::char_traits<char> >&))'
>      >>>>
>      >>>> /home/amirreza/Amirreza/moab-__4.6.0/gcc/lib/libMOAB.a(__OrientedBox.o):(.eh_frame+__0x22f):
>      >>>> undefined reference to
>      >>>>
>      >>>>          `__gxx_personality_v0'
>      >>>>          collect2: ld returned 1 exit status
>      >>>>          make: *** [nek5000] Error 1
>      >>>>
>      >>>>          Thanks,
>      >>>>          Ami
>      >>>>
>      >>>>
>      >>>>          _________________________________________________
>      >>>>          Nek5000-users mailing list
>      >>>>          Nek5000-users at lists.mcs.anl.__gov
>      >>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
>      >>>>          https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
>      >>>>          <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>      >>>>
>      >>>>
>      >>>>      --
>      >>>>      ==============================__==============================__====
>      >>>>
>      >>>>      "You will keep in perfect peace him whose mind is
>      >>>>         steadfast, because he trusts in you."               Isaiah 26:3
>      >>>>
>      >>>>                    Tim Tautges            Argonne National Laboratory
>      >>>>                (tautges at mcs.anl.gov <mailto:tautges at mcs.anl.gov>)
>      >>>> (telecommuting from UW-Madison)
>      >>>>        phone (gvoice): (608) 354-1459 <tel:%28608%29%20354-1459>      1500
>      >>>> Engineering Dr.
>      >>>>                   fax: (608) 263-4499 <tel:%28608%29%20263-4499>
>      >>>> Madison, WI 53706
>      >>>>
>      >>>>      _________________________________________________
>      >>>>      Nek5000-users mailing list
>      >>>>      Nek5000-users at lists.mcs.anl.__gov
>      >>>> <mailto:Nek5000-users at lists.mcs.anl.gov>
>      >>>>      https://lists.mcs.anl.gov/__mailman/listinfo/nek5000-users
>      >>>> <https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users>
>      >>>>
>      >>>>
>      >>>>
>      >>>>
>      >>>>
>      >>>> _______________________________________________
>      >>>> Nek5000-users mailing list
>      >>>> Nek5000-users at lists.mcs.anl.gov
>      >>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>      >>>>
>      >>>
>      >>> --
>      >>> ================================================================
>      >>> "You will keep in perfect peace him whose mind is
>      >>>    steadfast, because he trusts in you."               Isaiah 26:3
>      >>>
>      >>>               Tim Tautges            Argonne National Laboratory
>      >>>           (tautges at mcs.anl.gov)      (telecommuting from UW-Madison)
>      >>>   phone (gvoice): (608) 354-1459      1500 Engineering Dr.
>      >>>              fax: (608) 263-4499      Madison, WI 53706
>      >>>
>      >>> _______________________________________________
>      >>> Nek5000-users mailing list
>      >>> Nek5000-users at lists.mcs.anl.gov
>      >>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>      >>
>      >>
>      >>
>      >> _______________________________________________
>      >> Nek5000-users mailing list
>      >> Nek5000-users at lists.mcs.anl.gov
>      >> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>      >>
>      >
>
>     --
>     ================================================================
>     "You will keep in perfect peace him whose mind is
>         steadfast, because he trusts in you."               Isaiah 26:3
>
>                    Tim Tautges            Argonne National Laboratory
>                (tautges at mcs.anl.gov)      (telecommuting from UW-Madison)
>        phone (gvoice): (608) 354-1459      1500 Engineering Dr.
>                   fax: (608) 263-4499      Madison, WI 53706
>
>

-- 
================================================================
"You will keep in perfect peace him whose mind is
   steadfast, because he trusts in you."               Isaiah 26:3

              Tim Tautges            Argonne National Laboratory
          (tautges at mcs.anl.gov)      (telecommuting from UW-Madison)
  phone (gvoice): (608) 354-1459      1500 Engineering Dr.
             fax: (608) 263-4499      Madison, WI 53706



More information about the moab-dev mailing list