[MOAB-dev] Build failed in Jenkins: moab_par #20

jenkins-ci at mcs.anl.gov jenkins-ci at mcs.anl.gov
Wed Mar 27 15:31:48 CDT 2013


See <http://jenkins-ci.mcs.anl.gov/job/moab_par/20/>

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/bin/sh ../../libtool  --tag=CXX   --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src  -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMesh_MOAB.lo -MD -MP -MF .deps/iMesh_MOAB.Tpo -c -o iMesh_MOAB.lo iMesh_MOAB.cpp
libtool: compile:  mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMesh_MOAB.lo -MD -MP -MF .deps/iMesh_MOAB.Tpo -c iMesh_MOAB.cpp -o iMesh_MOAB.o
mv -f .deps/iMesh_MOAB.Tpo .deps/iMesh_MOAB.Plo
/bin/sh ../../libtool  --tag=CXX   --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src  -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMeshP_MOAB.lo -MD -MP -MF .deps/iMeshP_MOAB.Tpo -c -o iMeshP_MOAB.lo iMeshP_MOAB.cpp
libtool: compile:  mpicxx -DHAVE_CONFIG_H -I. -I../.. -I../../src/moab -I../../src/parallel -I../../src -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64 -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -DSRCDIR=. -DMESHDIR=../../MeshFiles/unittest -I./.. -I../../src -I../../src -I../../itaps -I../../test -I../../src/parallel -I../../src/parallel/moab -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT iMeshP_MOAB.lo -MD -MP -MF .deps/iMeshP_MOAB.Tpo -c iMeshP_MOAB.cpp -o iMeshP_MOAB.o
mv -f .deps/iMeshP_MOAB.Tpo .deps/iMeshP_MOAB.Plo
/bin/sh ../../libtool  --tag=CXX   --mode=link mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/home/autotest/jenkins/cgm/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin        -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/home/autotest/jenkins/cgm/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib   -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -o libiMesh.la -rpath /home/autotest/jenkins/moab/lib iMesh_MOAB.lo iMeshP_MOAB.lo ../../src/libMOAB.la -lm
libtool: link: ar cru .libs/libiMesh.a  iMesh_MOAB.o iMeshP_MOAB.o
libtool: link: ranlib .libs/libiMesh.a
libtool: link: ( cd ".libs" && rm -f "libiMesh.la" && ln -s "../libiMesh.la" "libiMesh.la" )
make[4]: Leaving directory `<http://jenkins-ci.mcs.anl.gov/job/moab_par/ws/itaps/imesh'>
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Making all in tools
make[2]: Entering directory `<http://jenkins-ci.mcs.anl.gov/job/moab_par/ws/tools'>
Making all in .
make[3]: Entering directory `<http://jenkins-ci.mcs.anl.gov/job/moab_par/ws/tools'>
mpicxx -DHAVE_CONFIG_H -I. -I.. -I../src/moab -I../src/parallel -I../src  -I/homes/fathom/buildbot/packages/hdf5-x64-parallel/include -isystem /homes/fathom/buildbot/packages/hdf5-x64-parallel/include  -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -DHAVE_VSNPRINTF -D_FILE_OFFSET_BITS=64   -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL -DNETCDF_FILE -DCGM -I../src -I../src -I../src/parallel -I../itaps -I../itaps/imesh -I../src/parallel -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -DHAVE_UNORDERED_SET=tr1/unordered_set  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -MT convert.o -MD -MP -MF .deps/convert.Tpo -c -o convert.o convert.cpp
mv -f .deps/convert.Tpo .deps/convert.Po
/bin/sh ../libtool  --tag=CXX   --mode=link mpicxx  -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align  -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -R/home/autotest/jenkins/cgm/lib  -R/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin        -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/home/autotest/jenkins/cgm/lib  -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib   -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -o mbconvert convert.o ../src/libMOAB.la ../itaps/imesh/libiMesh.la -lm
libtool: link: mpicxx -Wall -pipe -pedantic -Wno-long-long -Wextra -Wcast-align -Wpointer-arith -Wformat -Wformat-security -Wshadow -Wunused-parameter -O2 -DNDEBUG -o mbconvert convert.o  -L/homes/fathom/buildbot/packages/hdf5-x64-parallel/lib -L/home/autotest/jenkins/cgm/lib -L/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin ../src/.libs/libMOAB.a ../itaps/imesh/.libs/libiMesh.a <http://jenkins-ci.mcs.anl.gov/job/moab_par/ws/src/.libs/libMOAB.a> -lnetcdf /homes/jvporter/lib/libhdf5.a -lz /home/autotest/jenkins/cgm/lib/libcgm.a -lcubiti19 /usr/lib/libcr.so -lm -Wl,-rpath -Wl,/home/autotest/jenkins/cgm/lib -Wl,-rpath -Wl,/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin
/usr/bin/ld: /home/autotest/jenkins/cgm/lib/libcgm.a(InitCGMA.o): undefined reference to symbol 'GeometryModifyTool::instance(GeometryModifyEngine*)'
/usr/bin/ld: note: 'GeometryModifyTool::instance(GeometryModifyEngine*)' is defined in DSO /homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubit_geom.so so try adding it to the linker command line
/homes/fathom/3rdparty/cubit/Cubit64/Cubit-13.1/bin/libcubit_geom.so: could not read symbols: Invalid operation
collect2: ld returned 1 exit status
make[3]: *** [mbconvert] Error 1
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make[2]: *** [all-recursive] Error 1
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make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `<http://jenkins-ci.mcs.anl.gov/job/moab_par/ws/'>
make: *** [all] Error 2
Build step 'Execute shell' marked build as failure


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