[MOAB-dev] failing configure (netcdf++ and hdf5)
Lukasz Kaczmarczyk
likask at civil.gla.ac.uk
Thu Jul 23 15:33:57 CDT 2009
Hello
I use recent version download from svn (3055). I have netcdf build
with netcdf_c++, it is problem with static linkage. I am not expert in
autoconfig and m4 but I make a patch which fix this problem, pleas see
attached:
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On 23 Jul 2009, at 20:41, Tim Tautges wrote:
> Hi Lukasz,
> I'm not sure that version is reliable (I should really take it off
> the wiki site...). However, from the output below, it appears that
> netcdf isn't built right on your machine. Note that MOAB requires
> netcdf's C++ interface, which isn't built by default with netcdf.
> However, there were also issues with our configure stuff not
> checking for netcdf properly, so it might actually be built
> correctly. You can tell by looking for -lnetcdf_c++ in the link
> line for some of the utilities in the tools/ subdirectory.
>
> Note, I'm just about to commit more changes to the parallel branch
> that make your cub_trefftz.h5m file load properly (though there's
> still something odd with other files); maybe you're not using the
> trunk because of bugs in the parallel read?
>
> - tim
>
> Lukasz Kaczmarczyk wrote:
>> Hello
>> I spotted problem with netcdf++ and hdf5 configure. My version
>> netcdf++ has to be linked with hdf5 libraries. I have temporary
>> solution, I set LDFLAGS="-L/Users/likask/MyBuild/hdf5-1.8.3_darwin/
>> lib -lhdf5_hl -lhdf5 -lz"
>> This file contains any messages produced by compilers while
>> running configure, to aid debugging if configure makes a mistake.
>> It was created by MOAB configure 3.99, which was
>> generated by GNU Autoconf 2.63. Invocation command line was
>> $ ./configure CFLAGS=-g -O0 CXXFLAGS=-g -O0 CC=mpicc CXX=mpicxx
>> F77=mpif77 FC=mpif77 --prefix=/Users/likask/MyBuild/moab-svn_darwin
>> --with-hdf5=/Users/likask/MyBuild/hdf5-1.8.3_darwin --with-netcdf=/
>> Users/likask/MyBuild/netcdf-4.0.1_darwin --with-zoltan=/Users/
>> likask/MyBuild/Zoltan_v3.1_darwin --with-parmetis=/Users/likask/
>> MyBuild/src/ParMetis-3.1.1 --with-mpi=/Users/likask/MyBuild/
>> openmpi-1.3.2_darwin --enable-mbzoltan --enable-imesh=nofortran --
>> no-create
>> ## --------- ##
>> ## Platform. ##
>> ## --------- ##
>> hostname = mackiss
>> uname -m = i386
>> uname -r = 9.7.0
>> uname -s = Darwin
>> uname -v = Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT
>> 2009; root:xnu-1228.12.14~1/RELEASE_I386
>> /usr/bin/uname -p = i386
>> /bin/uname -X = unknown
>> /bin/arch = unknown
>> /usr/bin/arch -k = unknown
>> /usr/convex/getsysinfo = unknown
>> /usr/bin/hostinfo = Mach kernel version:
>> Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009;
>> root:xnu-1228.12.14~1/RELEASE_I386
>> Kernel configured for up to 2 processors.
>> 2 processors are physically available.
>> 2 processors are logically available.
>> Processor type: i486 (Intel 80486)
>> Processors active: 0 1
>> Primary memory available: 2.00 gigabytes
>> Default processor set: 66 tasks, 329 threads, 2 processors
>> Load average: 0.98, Mach factor: 1.30
>> /bin/machine = unknown
>> /usr/bin/oslevel = unknown
>> /bin/universe = unknown
>> PATH: /Library/Frameworks/Python.framework/Versions/Current/bin
>> PATH: /Users/likask/MyBuild/openmpi-1.3.2_darwin/bin
>> PATH: /opt/toolworks/totalview.8.6.0-3/bin
>> PATH: /opt/intel/idbe/10.1.017/bin
>> PATH: /opt/intel/fc/10.1.017/bin
>> PATH: /opt/intel/cc/10.1.015/bin
>> PATH: /Users/likask/MyBuild/src/YaFFEMS/bin
>> PATH: /Users/likask/MyBuild/bin
>> PATH: /opt/local/dx/bin
>> PATH: /opt/local/dx/bin_macos
>> PATH: /opt/local/bin
>> PATH: /opt/local/sbin
>> PATH: /usr/bin
>> PATH: /bin
>> PATH: /usr/sbin
>> PATH: /sbin
>> PATH: /usr/local/bin
>> PATH: /usr/texbin
>> PATH: /usr/X11/bin
>> ## ----------- ##
>> ## Core tests. ##
>> ## ----------- ##
>> configure:2324: checking build system type
>> configure:2342: result: i386-apple-darwin9.7.0
>> configure:2364: checking host system type
>> configure:2379: result: i386-apple-darwin9.7.0
>> configure:2401: checking target system type
>> configure:2416: result: i386-apple-darwin9.7.0
>> configure:2460: checking for a BSD-compatible install
>> configure:2528: result: /opt/local/bin/ginstall -c
>> configure:2539: checking whether build environment is sane
>> configure:2582: result: yes
>> configure:2607: checking for a thread-safe mkdir -p
>> configure:2646: result: /opt/local/bin/gmkdir -p
>> configure:2659: checking for gawk
>> configure:2675: found /opt/local/bin/gawk
>> configure:2686: result: gawk
>> configure:2697: checking whether make sets $(MAKE)
>> configure:2719: result: yes
>> configure:2906: checking for sed
>> configure:2922: found /usr/bin/sed
>> configure:2934: result: sed
>> configure:2973: checking if iMesh support is to be built
>> configure:2975: result: yes
>> configure:3004: checking for style of include used by make
>> configure:3032: result: GNU
>> configure:3258: checking for C compiler version
>> configure:3266: mpicc --version >&5
>> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
>> Copyright (C) 2005 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
>> There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>> configure:3270: $? = 0
>> configure:3277: mpicc -v >&5
>> Using built-in specs.
>> Target: i686-apple-darwin9
>> Configured with: /var/tmp/gcc/gcc-5493~1/src/configure --disable-
>> checking -enable-werror --prefix=/usr --mandir=/share/man --enable-
>> languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/
>> s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/
>> usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-
>> tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9
>> Thread model: posix
>> gcc version 4.0.1 (Apple Inc. build 5493)
>> configure:3281: $? = 0
>> configure:3288: mpicc -V >&5
>> gcc-4.0: argument to `-V' is missing
>> configure:3292: $? = 1
>> configure:3315: checking for C compiler default output file name
>> configure:3337: mpicc -g -O0 conftest.c >&5
>> configure:3341: $? = 0
>> configure:3379: result: a.out
>> configure:3398: checking whether the C compiler works
>> configure:3408: ./a.out
>> configure:3412: $? = 0
>> configure:3431: result: yes
>> configure:3438: checking whether we are cross compiling
>> configure:3440: result: no
>> configure:3443: checking for suffix of executables
>> configure:3450: mpicc -o conftest -g -O0 conftest.c >&5
>> configure:3454: $? = 0
>> configure:3480: result:
>> configure:3486: checking for suffix of object files
>> configure:3512: mpicc -c -g -O0 conftest.c >&5
>> configure:3516: $? = 0
>> configure:3541: result: o
>> configure:3545: checking whether we are using the GNU C compiler
>> configure:3574: mpicc -c -g -O0 conftest.c >&5
>> configure:3581: $? = 0
>> configure:3598: result: yes
>> configure:3607: checking whether mpicc accepts -g
>> configure:3637: mpicc -c -g conftest.c >&5
>> configure:3644: $? = 0
>> configure:3745: result: yes
>> configure:3762: checking for mpicc option to accept ISO C89
>> configure:3836: mpicc -c -g -O0 conftest.c >&5
>> configure:3843: $? = 0
>> configure:3866: result: none needed
>> configure:3886: checking dependency style of mpicc
>> configure:3977: result: gcc3
>> configure:3997: checking for known C compilers
>> configure:4822: result: GNU
>> configure:4830: checking for known compiler/OS combinations
>> configure:4891: result: GNU:i386
>> configure:4900: checking how to run the C preprocessor
>> configure:4940: mpicc -E conftest.c
>> configure:4947: $? = 0
>> configure:4978: mpicc -E conftest.c
>> conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
>> configure:4985: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | /* end confdefs.h. */
>> | #include <ac_nonexistent.h>
>> configure:5018: result: mpicc -E
>> configure:5047: mpicc -E conftest.c
>> configure:5054: $? = 0
>> configure:5085: mpicc -E conftest.c
>> conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
>> configure:5092: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | /* end confdefs.h. */
>> | #include <ac_nonexistent.h>
>> configure:5244: checking for C++ compiler version
>> configure:5252: mpicxx --version >&5
>> i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
>> Copyright (C) 2005 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
>> There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>> configure:5256: $? = 0
>> configure:5263: mpicxx -v >&5
>> Using built-in specs.
>> Target: i686-apple-darwin9
>> Configured with: /var/tmp/gcc/gcc-5493~1/src/configure --disable-
>> checking -enable-werror --prefix=/usr --mandir=/share/man --enable-
>> languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/
>> s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/
>> usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-
>> tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9
>> Thread model: posix
>> gcc version 4.0.1 (Apple Inc. build 5493)
>> configure:5267: $? = 0
>> configure:5274: mpicxx -V >&5
>> g++-4.0: argument to `-V' is missing
>> configure:5278: $? = 1
>> configure:5281: checking whether we are using the GNU C++ compiler
>> configure:5310: mpicxx -c -g -O0 conftest.cpp >&5
>> configure:5317: $? = 0
>> configure:5334: result: yes
>> configure:5343: checking whether mpicxx accepts -g
>> configure:5373: mpicxx -c -g conftest.cpp >&5
>> configure:5380: $? = 0
>> configure:5481: result: yes
>> configure:5506: checking dependency style of mpicxx
>> configure:5597: result: gcc3
>> configure:5617: checking how to run the C++ preprocessor
>> configure:5653: mpicxx -E conftest.cpp
>> configure:5660: $? = 0
>> configure:5691: mpicxx -E conftest.cpp
>> conftest.cpp:10:28: error: ac_nonexistent.h: No such file or
>> directory
>> configure:5698: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | /* end confdefs.h. */
>> | #include <ac_nonexistent.h>
>> configure:5731: result: mpicxx -E
>> configure:5760: mpicxx -E conftest.cpp
>> configure:5767: $? = 0
>> configure:5798: mpicxx -E conftest.cpp
>> conftest.cpp:10:28: error: ac_nonexistent.h: No such file or
>> directory
>> configure:5805: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | /* end confdefs.h. */
>> | #include <ac_nonexistent.h>
>> configure:5848: checking for known c++ compilers
>> configure:6639: result: GNU
>> configure:6647: checking for known compiler/OS combinations
>> configure:6709: result: GNU:i386
>> configure:7374: checking whether ln -s works
>> configure:7378: result: yes
>> configure:7385: checking whether make sets $(MAKE)
>> configure:7407: result: yes
>> configure:7472: checking for a sed that does not truncate output
>> configure:7538: result: sed
>> configure:7556: checking for grep that handles long lines and -e
>> configure:7616: result: /usr/bin/grep
>> configure:7621: checking for egrep
>> configure:7685: result: /usr/bin/grep -E
>> configure:7690: checking for fgrep
>> configure:7754: result: /usr/bin/grep -F
>> configure:7789: checking for ld used by mpicc
>> configure:7856: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
>> configure:7865: checking if the linker (/usr/libexec/gcc/i686-apple-
>> darwin9/4.0.1/ld) is GNU ld
>> configure:7880: result: no
>> configure:7892: checking for BSD- or MS-compatible name lister (nm)
>> configure:7941: result: /usr/bin/nm -p
>> configure:8059: checking the name lister (/usr/bin/nm -p) interface
>> configure:8066: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:8069: /usr/bin/nm -p "conftest.o"
>> configure:8072: output
>> 0000016c D _some_variable
>> configure:8079: result: BSD nm
>> configure:8083: checking the maximum length of command line arguments
>> configure:8203: result: 196608
>> configure:8220: checking whether the shell understands some XSI
>> constructs
>> configure:8230: result: yes
>> configure:8234: checking whether the shell understands "+="
>> configure:8240: result: yes
>> configure:8275: checking for /usr/libexec/gcc/i686-apple-
>> darwin9/4.0.1/ld option to reload object files
>> configure:8282: result: -r
>> configure:8351: checking for objdump
>> configure:8381: result: no
>> configure:8410: checking how to recognize dependent libraries
>> configure:8606: result: pass_all
>> configure:8666: checking for ar
>> configure:8682: found /usr/bin/ar
>> configure:8693: result: ar
>> configure:8771: checking for strip
>> configure:8787: found /usr/bin/strip
>> configure:8798: result: strip
>> configure:8870: checking for ranlib
>> configure:8886: found /usr/bin/ranlib
>> configure:8897: result: ranlib
>> configure:8987: checking command to parse /usr/bin/nm -p output
>> from mpicc object
>> configure:9105: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:9108: $? = 0
>> configure:9112: /usr/bin/nm -p conftest.o \| sed -n -e 's/^.*[ ]
>> \([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/
>> \1 \2 \2/p' \> conftest.nm
>> configure:9115: $? = 0
>> cannot find nm_test_var in conftest.nm
>> configure:9105: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:9108: $? = 0
>> configure:9112: /usr/bin/nm -p conftest.o \| sed -n -e 's/^.*[ ]
>> \([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)
>> $/\1 _\2 \2/p' \> conftest.nm
>> configure:9115: $? = 0
>> configure:9169: mpicc -o conftest -g -O0 -Wall -pipe conftest.c
>> conftstm.o >&5
>> configure:9172: $? = 0
>> configure:9210: result: ok
>> configure:9503: checking for dsymutil
>> configure:9519: found /usr/bin/dsymutil
>> configure:9530: result: dsymutil
>> configure:9595: checking for nmedit
>> configure:9611: found /usr/bin/nmedit
>> configure:9622: result: nmedit
>> configure:9687: checking for lipo
>> configure:9703: found /usr/bin/lipo
>> configure:9714: result: lipo
>> configure:9779: checking for otool
>> configure:9795: found /usr/bin/otool
>> configure:9806: result: otool
>> configure:9871: checking for otool64
>> configure:9901: result: no
>> configure:9946: checking for -single_module linker flag
>> mpicc -g -O0 -Wall -pipe -o libconftest.dylib -dynamiclib -Wl,-
>> single_module conftest.c
>> configure:9973: result: yes
>> configure:9975: checking for -exported_symbols_list linker flag
>> configure:10005: mpicc -o conftest -g -O0 -Wall -pipe -Wl,-
>> exported_symbols_list,conftest.sym conftest.c -lm >&5
>> configure:10012: $? = 0
>> configure:10034: result: yes
>> configure:10072: checking for ANSI C header files
>> configure:10102: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10109: $? = 0
>> configure:10208: mpicc -o conftest -g -O0 -Wall -pipe conftest.c -
>> lm >&5
>> configure:10212: $? = 0
>> configure:10218: ./conftest
>> configure:10222: $? = 0
>> configure:10240: result: yes
>> configure:10264: checking for sys/types.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for sys/stat.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for stdlib.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for string.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for memory.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for strings.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for inttypes.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for stdint.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10264: checking for unistd.h
>> configure:10285: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10292: $? = 0
>> configure:10309: result: yes
>> configure:10327: checking for dlfcn.h
>> configure:10348: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:10355: $? = 0
>> configure:10372: result: yes
>> configure:10499: checking for C++ compiler version
>> configure:10507: mpicxx --version >&5
>> i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
>> Copyright (C) 2005 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.
>> There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
>> PURPOSE.
>> configure:10511: $? = 0
>> configure:10518: mpicxx -v >&5
>> Using built-in specs.
>> Target: i686-apple-darwin9
>> Configured with: /var/tmp/gcc/gcc-5493~1/src/configure --disable-
>> checking -enable-werror --prefix=/usr --mandir=/share/man --enable-
>> languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/
>> s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/
>> usr/lib --build=i686-apple-darwin9 --with-arch=apple --with-
>> tune=generic --host=i686-apple-darwin9 --target=i686-apple-darwin9
>> Thread model: posix
>> gcc version 4.0.1 (Apple Inc. build 5493)
>> configure:10522: $? = 0
>> configure:10529: mpicxx -V >&5
>> g++-4.0: argument to `-V' is missing
>> configure:10533: $? = 1
>> configure:10536: checking whether we are using the GNU C++ compiler
>> configure:10589: result: yes
>> configure:10598: checking whether mpicxx accepts -g
>> configure:10736: result: yes
>> configure:10761: checking dependency style of mpicxx
>> configure:10852: result: gcc3
>> configure:10875: checking how to run the C++ preprocessor
>> configure:10989: result: mpicxx -E
>> configure:11018: mpicxx -E conftest.cpp
>> configure:11025: $? = 0
>> configure:11056: mpicxx -E conftest.cpp
>> conftest.cpp:21:28: error: ac_nonexistent.h: No such file or
>> directory
>> configure:11063: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | /* end confdefs.h. */
>> | #include <ac_nonexistent.h>
>> configure:11211: checking for Fortran 77 compiler version
>> configure:11219: mpif77 --version >&5
>> GNU Fortran (GCC) 4.3.0 20070810 (experimental)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>> configure:11223: $? = 0
>> configure:11230: mpif77 -v >&5
>> Using built-in specs.
>> Target: i386-apple-darwin8.10.1
>> Configured with: ../gcc-4.3-20070810/configure --enable-
>> threads=posix --enable-languages=fortran
>> Thread model: posix
>> gcc version 4.3.0 20070810 (experimental)
>> configure:11234: $? = 0
>> configure:11241: mpif77 -V >&5
>> gfortran: '-V' option must have argument
>> configure:11245: $? = 1
>> configure:11253: checking whether we are using the GNU Fortran 77
>> compiler
>> configure:11272: mpif77 -c conftest.F >&5
>> configure:11279: $? = 0
>> configure:11296: result: yes
>> configure:11302: checking whether mpif77 accepts -g
>> configure:11319: mpif77 -c -g conftest.f >&5
>> configure:11326: $? = 0
>> configure:11342: result: yes
>> configure:11485: checking for Fortran compiler version
>> configure:11493: mpif77 --version >&5
>> GNU Fortran (GCC) 4.3.0 20070810 (experimental)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>> configure:11497: $? = 0
>> configure:11504: mpif77 -v >&5
>> Using built-in specs.
>> Target: i386-apple-darwin8.10.1
>> Configured with: ../gcc-4.3-20070810/configure --enable-
>> threads=posix --enable-languages=fortran
>> Thread model: posix
>> gcc version 4.3.0 20070810 (experimental)
>> configure:11508: $? = 0
>> configure:11515: mpif77 -V >&5
>> gfortran: '-V' option must have argument
>> configure:11519: $? = 1
>> configure:11527: checking whether we are using the GNU Fortran
>> compiler
>> configure:11546: mpif77 -c -O2 -DNDEBUG conftest.F >&5
>> configure:11553: $? = 0
>> configure:11570: result: yes
>> configure:11576: checking whether mpif77 accepts -g
>> configure:11593: mpif77 -c -g conftest.f >&5
>> configure:11600: $? = 0
>> configure:11616: result: yes
>> configure:11789: checking for objdir
>> configure:11804: result: .libs
>> configure:12100: checking if mpicc supports -fno-rtti -fno-exceptions
>> configure:12118: mpicc -c -g -O0 -Wall -pipe -fno-rtti -fno-
>> exceptions conftest.c >&5
>> cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC+
>> + but not for C
>> configure:12122: $? = 0
>> configure:12135: result: no
>> configure:12155: checking for mpicc option to produce PIC
>> configure:12427: result: -fno-common -DPIC
>> configure:12439: checking if mpicc PIC flag -fno-common -DPIC works
>> configure:12457: mpicc -c -g -O0 -Wall -pipe -fno-common -DPIC -
>> DPIC conftest.c >&5
>> configure:12461: $? = 0
>> configure:12474: result: yes
>> configure:12498: checking if mpicc static flag -static works
>> configure:12526: result: no
>> configure:12541: checking if mpicc supports -c -o file.o
>> configure:12562: mpicc -c -g -O0 -Wall -pipe -o out/conftest2.o
>> conftest.c >&5
>> configure:12566: $? = 0
>> configure:12588: result: yes
>> configure:12596: checking if mpicc supports -c -o file.o
>> configure:12643: result: yes
>> configure:12676: checking whether the mpicc linker (/usr/libexec/
>> gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
>> configure:13750: result: yes
>> configure:13989: checking dynamic linker characteristics
>> configure:14672: result: darwin9.7.0 dyld
>> configure:14774: checking how to hardcode library paths into programs
>> configure:14799: result: immediate
>> configure:15632: checking whether stripping libraries is possible
>> configure:15646: result: yes
>> configure:15672: checking if libtool supports shared libraries
>> configure:15674: result: yes
>> configure:15677: checking whether to build shared libraries
>> configure:15698: result: no
>> configure:15701: checking whether to build static libraries
>> configure:15705: result: yes
>> configure:15855: checking for ld used by mpicxx
>> configure:15922: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
>> configure:15931: checking if the linker (/usr/libexec/gcc/i686-
>> apple-darwin9/4.0.1/ld) is GNU ld
>> configure:15946: result: no
>> configure:16001: checking whether the mpicxx linker (/usr/libexec/
>> gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
>> configure:16976: result: yes
>> configure:17004: mpicxx -c -g -O0 -Wall -pipe conftest.cpp >&5
>> configure:17007: $? = 0
>> configure:17189: checking for mpicxx option to produce PIC
>> configure:17506: result: -fno-common -DPIC
>> configure:17515: checking if mpicxx PIC flag -fno-common -DPIC works
>> configure:17533: mpicxx -c -g -O0 -Wall -pipe -fno-common -DPIC -
>> DPIC conftest.cpp >&5
>> configure:17537: $? = 0
>> configure:17550: result: yes
>> configure:17571: checking if mpicxx static flag -static works
>> configure:17599: result: no
>> configure:17611: checking if mpicxx supports -c -o file.o
>> configure:17632: mpicxx -c -g -O0 -Wall -pipe -o out/conftest2.o
>> conftest.cpp >&5
>> configure:17636: $? = 0
>> configure:17658: result: yes
>> configure:17663: checking if mpicxx supports -c -o file.o
>> configure:17710: result: yes
>> configure:17740: checking whether the mpicxx linker (/usr/libexec/
>> gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
>> configure:17766: result: yes
>> configure:17903: checking dynamic linker characteristics
>> configure:18534: result: darwin9.7.0 dyld
>> configure:18585: checking how to hardcode library paths into programs
>> configure:18610: result: immediate
>> configure:18751: checking if libtool supports shared libraries
>> configure:18753: result: yes
>> configure:18756: checking whether to build shared libraries
>> configure:18776: result: no
>> configure:18779: checking whether to build static libraries
>> configure:18783: result: yes
>> configure:18797: checking for mpif77 option to produce PIC
>> configure:19069: result: -fno-common
>> configure:19078: checking if mpif77 PIC flag -fno-common works
>> configure:19096: mpif77 -c -g -O2 -fno-common conftest.f >&5
>> configure:19100: $? = 0
>> configure:19113: result: yes
>> configure:19134: checking if mpif77 static flag -static works
>> configure:19162: result: no
>> configure:19174: checking if mpif77 supports -c -o file.o
>> configure:19195: mpif77 -c -g -O2 -o out/conftest2.o conftest.f >&5
>> configure:19199: $? = 0
>> configure:19221: result: yes
>> configure:19226: checking if mpif77 supports -c -o file.o
>> configure:19273: result: yes
>> configure:19303: checking whether the mpif77 linker (/usr/libexec/
>> gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
>> configure:20357: result: yes
>> configure:20494: checking dynamic linker characteristics
>> configure:21115: result: darwin9.7.0 dyld
>> configure:21166: checking how to hardcode library paths into programs
>> configure:21191: result: immediate
>> configure:21327: checking if libtool supports shared libraries
>> configure:21329: result: yes
>> configure:21332: checking whether to build shared libraries
>> configure:21352: result: no
>> configure:21355: checking whether to build static libraries
>> configure:21359: result: yes
>> configure:21385: mpif77 -c -O2 -DNDEBUG conftest.f >&5
>> configure:21388: $? = 0
>> configure:21498: checking for mpif77 option to produce PIC
>> configure:21770: result: -fno-common
>> configure:21779: checking if mpif77 PIC flag -fno-common works
>> configure:21797: mpif77 -c -O2 -DNDEBUG -fno-common conftest.f >&5
>> configure:21801: $? = 0
>> configure:21814: result: yes
>> configure:21835: checking if mpif77 static flag -static works
>> configure:21863: result: no
>> configure:21875: checking if mpif77 supports -c -o file.o
>> configure:21896: mpif77 -c -O2 -DNDEBUG -o out/conftest2.o
>> conftest.f >&5
>> configure:21900: $? = 0
>> configure:21922: result: yes
>> configure:21927: checking if mpif77 supports -c -o file.o
>> configure:21974: result: yes
>> configure:22004: checking whether the mpif77 linker (/usr/libexec/
>> gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
>> configure:23058: result: yes
>> configure:23195: checking dynamic linker characteristics
>> configure:23816: result: darwin9.7.0 dyld
>> configure:23867: checking how to hardcode library paths into programs
>> configure:23892: result: immediate
>> configure:23942: checking for gunzip
>> configure:23958: found /usr/bin/gunzip
>> configure:23969: result: gunzip -c
>> configure:23979: checking for gzip
>> configure:24006: result: gunzip -c
>> configure:24016: checking for zcat
>> configure:24043: result: gunzip -c
>> configure:24066: checking if C++ compiler supports template class
>> specialization
>> configure:24100: mpicxx -c -g -O0 -Wall -pipe conftest.cpp >&5
>> configure:24107: $? = 0
>> configure:24128: result: yes
>> configure:24138: checking if C++ compiler supports template
>> function specialization
>> configure:24173: mpicxx -c -g -O0 -Wall -pipe conftest.cpp >&5
>> configure:24180: $? = 0
>> configure:24201: result: yes
>> configure:25142: checking for inttypes.h
>> configure:25147: result: yes
>> configure:25278: checking for stdint.h
>> configure:25283: result: yes
>> configure:25414: checking for sys/types.h
>> configure:25419: result: yes
>> configure:25559: checking stddef.h usability
>> configure:25576: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:25583: $? = 0
>> configure:25597: result: yes
>> configure:25601: checking stddef.h presence
>> configure:25616: mpicc -E conftest.c
>> configure:25623: $? = 0
>> configure:25637: result: yes
>> configure:25665: checking for stddef.h
>> configure:25672: result: yes
>> configure:25686: checking for stdlib.h
>> configure:25691: result: yes
>> configure:26078: checking for size_t
>> configure:26114: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:26121: $? = 0
>> configure:26156: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:75: error: syntax error before ')' token
>> conftest.c:79: warning: control reaches end of non-void function
>> configure:26163: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | /* end confdefs.h. */
>> | #include <stdio.h>
>> | #ifdef HAVE_SYS_TYPES_H
>> | # include <sys/types.h>
>> | #endif
>> | #ifdef HAVE_SYS_STAT_H
>> | # include <sys/stat.h>
>> | #endif
>> | #ifdef STDC_HEADERS
>> | # include <stdlib.h>
>> | # include <stddef.h>
>> | #else
>> | # ifdef HAVE_STDLIB_H
>> | # include <stdlib.h>
>> | # endif
>> | #endif
>> | #ifdef HAVE_STRING_H
>> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> | # include <memory.h>
>> | # endif
>> | # include <string.h>
>> | #endif
>> | #ifdef HAVE_STRINGS_H
>> | # include <strings.h>
>> | #endif
>> | #ifdef HAVE_INTTYPES_H
>> | # include <inttypes.h>
>> | #endif
>> | #ifdef HAVE_STDINT_H
>> | # include <stdint.h>
>> | #endif
>> | #ifdef HAVE_UNISTD_H
>> | # include <unistd.h>
>> | #endif
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | if (sizeof ((size_t)))
>> | return 0;
>> | ;
>> | return 0;
>> | }
>> configure:26186: result: yes
>> configure:26200: checking for ptrdiff_t
>> configure:26236: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> configure:26243: $? = 0
>> configure:26278: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> conftest.c: In function 'main':
>> conftest.c:76: error: syntax error before ')' token
>> conftest.c:80: warning: control reaches end of non-void function
>> configure:26285: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | /* end confdefs.h. */
>> | #include <stdio.h>
>> | #ifdef HAVE_SYS_TYPES_H
>> | # include <sys/types.h>
>> | #endif
>> | #ifdef HAVE_SYS_STAT_H
>> | # include <sys/stat.h>
>> | #endif
>> | #ifdef STDC_HEADERS
>> | # include <stdlib.h>
>> | # include <stddef.h>
>> | #else
>> | # ifdef HAVE_STDLIB_H
>> | # include <stdlib.h>
>> | # endif
>> | #endif
>> | #ifdef HAVE_STRING_H
>> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> | # include <memory.h>
>> | # endif
>> | # include <string.h>
>> | #endif
>> | #ifdef HAVE_STRINGS_H
>> | # include <strings.h>
>> | #endif
>> | #ifdef HAVE_INTTYPES_H
>> | # include <inttypes.h>
>> | #endif
>> | #ifdef HAVE_STDINT_H
>> | # include <stdint.h>
>> | #endif
>> | #ifdef HAVE_UNISTD_H
>> | # include <unistd.h>
>> | #endif
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | if (sizeof ((ptrdiff_t)))
>> | return 0;
>> | ;
>> | return 0;
>> | }
>> configure:26308: result: yes
>> configure:26337: checking ieeefp.h usability
>> configure:26354: mpicc -c -g -O0 -Wall -pipe conftest.c >&5
>> conftest.c:66:20: error: ieeefp.h: No such file or directory
>> configure:26361: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | /* end confdefs.h. */
>> | #include <stdio.h>
>> | #ifdef HAVE_SYS_TYPES_H
>> | # include <sys/types.h>
>> | #endif
>> | #ifdef HAVE_SYS_STAT_H
>> | # include <sys/stat.h>
>> | #endif
>> | #ifdef STDC_HEADERS
>> | # include <stdlib.h>
>> | # include <stddef.h>
>> | #else
>> | # ifdef HAVE_STDLIB_H
>> | # include <stdlib.h>
>> | # endif
>> | #endif
>> | #ifdef HAVE_STRING_H
>> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> | # include <memory.h>
>> | # endif
>> | # include <string.h>
>> | #endif
>> | #ifdef HAVE_STRINGS_H
>> | # include <strings.h>
>> | #endif
>> | #ifdef HAVE_INTTYPES_H
>> | # include <inttypes.h>
>> | #endif
>> | #ifdef HAVE_STDINT_H
>> | # include <stdint.h>
>> | #endif
>> | #ifdef HAVE_UNISTD_H
>> | # include <unistd.h>
>> | #endif
>> | #include <ieeefp.h>
>> configure:26375: result: no
>> configure:26379: checking ieeefp.h presence
>> configure:26394: mpicc -E conftest.c
>> conftest.c:33:20: error: ieeefp.h: No such file or directory
>> configure:26401: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | /* end confdefs.h. */
>> | #include <ieeefp.h>
>> configure:26415: result: no
>> configure:26443: checking for ieeefp.h
>> configure:26450: result: no
>> configure:26600: checking for C++ unordered_map
>> configure:26641: mpicxx -c -g -O0 -Wall -pipe conftest.cpp >&5
>> conftest.cpp:33:25: error: unordered_map: No such file or directory
>> conftest.cpp: In function 'int main()':
>> conftest.cpp:45: error: 'unordered_map' is not a member of 'std'
>> conftest.cpp:45: error: expected primary-expression before 'int'
>> conftest.cpp:45: error: expected `;' before 'int'
>> configure:26648: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | /* end confdefs.h. */
>> | #include <unordered_map>
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | std::unordered_map<int,int> map
>> | ;
>> | return 0;
>> | }
>> configure:26692: mpicxx -c -g -O0 -Wall -pipe conftest.cpp >&5
>> configure:26699: $? = 0
>> configure:26773: result: std::tr1
>> configure:26803: checking mpi.h usability
>> configure:26820: mpicc -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.c >&5
>> configure:26827: $? = 0
>> configure:26841: result: yes
>> configure:26845: checking mpi.h presence
>> configure:26860: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c
>> configure:26867: $? = 0
>> configure:26881: result: yes
>> configure:26909: checking for mpi.h
>> configure:26916: result: yes
>> configure:26929: checking If -DMPICH_IGNORE_CXX_SEEK is necessary
>> configure:26968: mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
>> configure:26975: $? = 0
>> configure:26980: result: no
>> configure:27102: checking for mpiexec
>> configure:27118: found /Users/likask/MyBuild/openmpi-1.3.2_darwin/
>> bin/mpiexec
>> configure:27129: result: mpiexec
>> configure:27174: checking for python
>> configure:27190: found /Library/Frameworks/Python.framework/
>> Versions/Current/bin/python
>> configure:27201: result: python
>> configure:27211: checking if python works
>> configure:27216: result: yes
>> configure:27238: checking for location of python headers
>> configure:27244: result: /Library/Frameworks/Python.framework/
>> Versions/4.3.0/include/python2.5
>> configure:27276: checking pyconfig.h usability
>> configure:27293: mpicc -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -
>> IPYCONFIG_DIR -I/Library/Frameworks/Python.framework/Versions/4.3.0/
>> include/python2.5 conftest.c >&5
>> configure:27300: $? = 0
>> configure:27314: result: yes
>> configure:27318: checking pyconfig.h presence
>> configure:27333: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map -IPYCONFIG_DIR -I/Library/
>> Frameworks/Python.framework/Versions/4.3.0/include/python2.5
>> conftest.c
>> configure:27340: $? = 0
>> configure:27354: result: yes
>> configure:27382: checking for pyconfig.h
>> configure:27389: result: yes
>> configure:27411: checking Python.h usability
>> configure:27428: mpicc -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -
>> IPYCONFIG_DIR -I/Library/Frameworks/Python.framework/Versions/4.3.0/
>> include/python2.5 conftest.c >&5
>> configure:27435: $? = 0
>> configure:27449: result: yes
>> configure:27453: checking Python.h presence
>> configure:27468: mpicc -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map -IPYCONFIG_DIR -I/Library/
>> Frameworks/Python.framework/Versions/4.3.0/include/python2.5
>> conftest.c
>> configure:27475: $? = 0
>> configure:27489: result: yes
>> configure:27517: checking for Python.h
>> configure:27524: result: yes
>> configure:27540: checking for NumPy module
>> configure:27545: result: yes
>> configure:27562: checking for location of NumPy includes
>> configure:27570: result: /Library/Frameworks/Python.framework/
>> Versions/4.3.0/lib/python2.5/site-packages/numpy-1.3.0n1-py2.5-
>> macosx-10.3-fat.egg/numpy/core/include configure:27578: checking
>> for numpy/arrayobject.h
>> configure:27599: mpicc -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -
>> I/Library/Frameworks/Python.framework/Versions/4.3.0/lib/python2.5/
>> site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/numpy/core/
>> include -IPYCONFIG_DIR -I/Library/Frameworks/Python.framework/
>> Versions/4.3.0/include/python2.5 conftest.c >&5
>> /Library/Frameworks/Python.framework/Versions/4.3.0/lib/python2.5/
>> site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/numpy/core/
>> include/numpy/__multiarray_api.h:969: warning: '_import_array'
>> defined but not used
>> configure:27606: $? = 0
>> configure:27621: result: yes
>> configure:27681: checking if Python support is to be built
>> configure:27683: result: no
>> configure:27727: checking for deflate in -lz
>> configure:27770: mpicc -o conftest -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.c -lz -lm >&5
>> configure:27777: $? = 0
>> configure:27798: result: yes
>> configure:27838: checking for SZ_Decompress in -lsz
>> configure:27881: mpicc -o conftest -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.c -lsz -lm >&5
>> ld: library not found for -lsz
>> collect2: ld returned 1 exit status
>> configure:27888: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | /* end confdefs.h. */
>> |
>> | /* Override any GCC internal prototype to avoid an error.
>> | Use char because int might match the return type of a GCC
>> | builtin and then its argument prototype would still apply. */
>> | #ifdef __cplusplus
>> | extern "C"
>> | #endif
>> | char SZ_Decompress ();
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | return SZ_Decompress ();
>> | ;
>> | return 0;
>> | }
>> configure:27909: result: no
>> configure:27951: checking if HDF5 support is enabled
>> configure:27967: result: yes
>> configure:27977: checking for gpfs_stat in -lgpfs
>> configure:28020: mpicc -o conftest -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.c -lgpfs -lm >&5
>> ld: library not found for -lgpfs
>> collect2: ld returned 1 exit status
>> configure:28027: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | /* end confdefs.h. */
>> |
>> | /* Override any GCC internal prototype to avoid an error.
>> | Use char because int might match the return type of a GCC
>> | builtin and then its argument prototype would still apply. */
>> | #ifdef __cplusplus
>> | extern "C"
>> | #endif
>> | char gpfs_stat ();
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | return gpfs_stat ();
>> | ;
>> | return 0;
>> | }
>> configure:28048: result: no
>> configure:28108: checking hdf5.h usability
>> configure:28125: mpicc -c -g -O0 -Wall -pipe -I/Users/likask/
>> MyBuild/hdf5-1.8.3_darwin/include -isystem /Users/likask/MyBuild/
>> hdf5-1.8.3_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5
>> configure:28132: $? = 0
>> configure:28146: result: yes
>> configure:28150: checking hdf5.h presence
>> configure:28165: mpicc -E -I/Users/likask/MyBuild/
>> hdf5-1.8.3_darwin/include -isystem /Users/likask/MyBuild/
>> hdf5-1.8.3_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c
>> configure:28172: $? = 0
>> configure:28186: result: yes
>> configure:28214: checking for hdf5.h
>> configure:28223: result: yes
>> configure:28243: checking for H5Fopen in -lhdf5
>> configure:28286: mpicc -o conftest -g -O0 -Wall -pipe -I/Users/
>> likask/MyBuild/hdf5-1.8.3_darwin/include -isystem /Users/likask/
>> MyBuild/hdf5-1.8.3_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Users/likask/MyBuild/
>> hdf5-1.8.3_darwin/lib conftest.c -lhdf5 -lm >&5
>> Undefined symbols:
>> "_inflateEnd", referenced from:
>> _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>> _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>> _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>> "_inflateInit_", referenced from:
>> _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>> "_compress2", referenced from:
>> _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>> "_inflate", referenced from:
>> _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>> ld: symbol(s) not found
>> collect2: ld returned 1 exit status
>> configure:28293: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | #define HAVE_HDF5_H 1
>> | /* end confdefs.h. */
>> |
>> | /* Override any GCC internal prototype to avoid an error.
>> | Use char because int might match the return type of a GCC
>> | builtin and then its argument prototype would still apply. */
>> | #ifdef __cplusplus
>> | extern "C"
>> | #endif
>> | char H5Fopen ();
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | return H5Fopen ();
>> | ;
>> | return 0;
>> | }
>> configure:28316: result: no
>> configure:28329: checking for H5Fopen in -lhdf5
>> configure:28372: mpicc -o conftest -g -O0 -Wall -pipe -I/Users/
>> likask/MyBuild/hdf5-1.8.3_darwin/include -isystem /Users/likask/
>> MyBuild/hdf5-1.8.3_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map -L/Users/likask/MyBuild/
>> hdf5-1.8.3_darwin/lib conftest.c -lhdf5 -lz -lm >&5
>> configure:28379: $? = 0
>> configure:28402: result: yes
>> configure:28640: checking for H5Pset_fapl_mpio in -lhdf5
>> configure:28684: mpicc -o conftest -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/
>> unordered_map -L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib
>> conftest.c -lhdf5 -lz -lhdf5
>> -lm >&5
>> configure:28691: $? = 0
>> configure:28712: result: yes
>> configure:28742: checking if NetCDF support is enabled
>> configure:28759: result: yes
>> configure:28786: checking strstream.h usability
>> configure:28803: mpicxx -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.cpp >&5
>> conftest.cpp:67:23: error: strstream.h: No such file or directory
>> configure:28810: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | #define HAVE_HDF5_H 1
>> | /* end confdefs.h. */
>> | #include <stdio.h>
>> | #ifdef HAVE_SYS_TYPES_H
>> | # include <sys/types.h>
>> | #endif
>> | #ifdef HAVE_SYS_STAT_H
>> | # include <sys/stat.h>
>> | #endif
>> | #ifdef STDC_HEADERS
>> | # include <stdlib.h>
>> | # include <stddef.h>
>> | #else
>> | # ifdef HAVE_STDLIB_H
>> | # include <stdlib.h>
>> | # endif
>> | #endif
>> | #ifdef HAVE_STRING_H
>> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> | # include <memory.h>
>> | # endif
>> | # include <string.h>
>> | #endif
>> | #ifdef HAVE_STRINGS_H
>> | # include <strings.h>
>> | #endif
>> | #ifdef HAVE_INTTYPES_H
>> | # include <inttypes.h>
>> | #endif
>> | #ifdef HAVE_STDINT_H
>> | # include <stdint.h>
>> | #endif
>> | #ifdef HAVE_UNISTD_H
>> | # include <unistd.h>
>> | #endif
>> | #include <strstream.h>
>> configure:28824: result: no
>> configure:28828: checking strstream.h presence
>> configure:28843: mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
>> conftest.cpp:34:23: error: strstream.h: No such file or directory
>> configure:28850: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | #define HAVE_HDF5_H 1
>> | /* end confdefs.h. */
>> | #include <strstream.h>
>> configure:28864: result: no
>> configure:28892: checking for strstream.h
>> configure:28899: result: no
>> configure:28917: checking sstream.h usability
>> configure:28934: mpicxx -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.cpp >&5
>> conftest.cpp:67:21: error: sstream.h: No such file or directory
>> configure:28941: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | #define HAVE_HDF5_H 1
>> | /* end confdefs.h. */
>> | #include <stdio.h>
>> | #ifdef HAVE_SYS_TYPES_H
>> | # include <sys/types.h>
>> | #endif
>> | #ifdef HAVE_SYS_STAT_H
>> | # include <sys/stat.h>
>> | #endif
>> | #ifdef STDC_HEADERS
>> | # include <stdlib.h>
>> | # include <stddef.h>
>> | #else
>> | # ifdef HAVE_STDLIB_H
>> | # include <stdlib.h>
>> | # endif
>> | #endif
>> | #ifdef HAVE_STRING_H
>> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
>> | # include <memory.h>
>> | # endif
>> | # include <string.h>
>> | #endif
>> | #ifdef HAVE_STRINGS_H
>> | # include <strings.h>
>> | #endif
>> | #ifdef HAVE_INTTYPES_H
>> | # include <inttypes.h>
>> | #endif
>> | #ifdef HAVE_STDINT_H
>> | # include <stdint.h>
>> | #endif
>> | #ifdef HAVE_UNISTD_H
>> | # include <unistd.h>
>> | #endif
>> | #include <sstream.h>
>> configure:28955: result: no
>> configure:28959: checking sstream.h presence
>> configure:28974: mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
>> conftest.cpp:34:21: error: sstream.h: No such file or directory
>> configure:28981: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | #define HAVE_HDF5_H 1
>> | /* end confdefs.h. */
>> | #include <sstream.h>
>> configure:28995: result: no
>> configure:29023: checking for sstream.h
>> configure:29030: result: no
>> configure:29048: checking strstream usability
>> configure:29065: mpicxx -c -g -O0 -Wall -pipe -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map
>> conftest.cpp >&5
>> In file included from /usr/include/c++/4.0.0/backward/strstream:51,
>> from conftest.cpp:67:
>> /usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning:
>> #warning This file includes at least one deprecated or antiquated
>> header. Please consider using one of the 32 headers found in
>> section 17.4.1.2 of the C++ standard. Examples include substituting
>> the <X> header for the <X.h> header for C++ includes, or <iostream>
>> instead of the deprecated header <iostream.h>. To disable this
>> warning use -Wno-deprecated.
>> configure:29072: $? = 0
>> configure:29086: result: yes
>> configure:29090: checking strstream presence
>> configure:29105: mpicxx -E -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
>> In file included from /usr/include/c++/4.0.0/backward/strstream:51,
>> from conftest.cpp:34:
>> /usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning:
>> #warning This file includes at least one deprecated or antiquated
>> header. Please consider using one of the 32 headers found in
>> section 17.4.1.2 of the C++ standard. Examples include substituting
>> the <X> header for the <X.h> header for C++ includes, or <iostream>
>> instead of the deprecated header <iostream.h>. To disable this
>> warning use -Wno-deprecated.
>> configure:29112: $? = 0
>> configure:29126: result: yes
>> configure:29154: checking for strstream
>> configure:29161: result: yes
>> configure:29360: checking netcdf.h usability
>> configure:29377: mpicc -c -g -O0 -Wall -pipe -I/Users/likask/
>> MyBuild/netcdf-4.0.1_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c >&5
>> configure:29384: $? = 0
>> configure:29398: result: yes
>> configure:29402: checking netcdf.h presence
>> configure:29417: mpicc -E -I/Users/likask/MyBuild/
>> netcdf-4.0.1_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c
>> configure:29424: $? = 0
>> configure:29438: result: yes
>> configure:29466: checking for netcdf.h
>> configure:29475: result: yes
>> configure:29493: checking for netcdf.hh
>> configure:29532: mpicxx -c -g -O0 -Wall -pipe -I/Users/likask/
>> MyBuild/netcdf-4.0.1_darwin/include -DUNORDERED_MAP_NS=std::tr1 -
>> DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp >&5
>> configure:29539: $? = 0
>> configure:29604: result: yes
>> configure:29615: checking for netcdf_c++ library
>> configure:29648: mpicxx -o conftest -g -O0 -Wall -pipe -I/Users/
>> likask/MyBuild/netcdf-4.0.1_darwin/include -
>> DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map -
>> L/Users/likask/MyBuild/netcdf-4.0.1_darwin/lib conftest.cpp -lm -
>> lnetcdf_c++ -lnetcdf >&5
>> Undefined symbols:
>> "_H5Gget_objinfo", referenced from:
>> _dimscale_visitor in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_match_dimscales in libnetcdf.a(nc4hdf.o)
>> "_H5Lget_name_by_idx", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I8LE_g", referenced from:
>> _H5T_STD_I8LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I32BE_g", referenced from:
>> _H5T_STD_I32BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Pcreate", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pget_nfilters", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pclose", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Awrite", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Gmove2", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Dread", referenced from:
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> "_H5T_IEEE_F32LE_g", referenced from:
>> _H5T_IEEE_F32LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U16LE_g", referenced from:
>> _H5T_STD_U16LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5P_CLS_GROUP_CREATE_g", referenced from:
>> _H5P_CLS_GROUP_CREATE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Sclose", referenced from:
>> _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tclose", referenced from:
>> _type_list_del in libnetcdf.a(nc4internal.o)
>> _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>> _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _nc4_free_global_hdf_string_typeid in libnetcdf.a(nc4hdf.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_array_dims1", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tvlen_create", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Dwrite", referenced from:
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> "_H5Tset_size", referenced from:
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> "_H5T_IEEE_F64BE_g", referenced from:
>> _H5T_IEEE_F64BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Pget_filter2", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Gunlink", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Sget_simple_extent_type", referenced from:
>> _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_INT_g", referenced from:
>> _H5T_NATIVE_INT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_fletcher32", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Sselect_hyperslab", referenced from:
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_ULLONG_g", referenced from:
>> _H5T_NATIVE_ULLONG_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Aget_space", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U8LE_g", referenced from:
>> _H5T_STD_U8LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Tinsert", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_fclose_degree", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5Dget_space", referenced from:
>> _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I16LE_g", referenced from:
>> _H5T_STD_I16LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Aopen_name", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_class", referenced from:
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Screate", referenced from:
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5close", referenced from:
>> _nc_close in libnetcdf.a(nc4file.o)
>> "_H5Fcreate", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> "_H5Pset_chunk", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_C_S1_g", referenced from:
>> _H5T_C_S1_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_fill_value", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_link_creation_order", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tcreate", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U32LE_g", referenced from:
>> _H5T_STD_U32LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Aget_type", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_member_type", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5P_CLS_FILE_ACCESS_g", referenced from:
>> _H5P_CLS_FILE_ACCESS_g$non_lazy_ptr in libnetcdf.a(nc4file.o)
>> "_H5T_NATIVE_SCHAR_g", referenced from:
>> _H5T_NATIVE_SCHAR_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Sget_simple_extent_dims", referenced from:
>> _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U64BE_g", referenced from:
>> _H5T_STD_U64BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5P_CLS_FILE_CREATE_g", referenced from:
>> _H5P_CLS_FILE_CREATE_g$non_lazy_ptr in libnetcdf.a(nc4file.o)
>> "_H5Dopen1", referenced from:
>> _nc4_open_var_grp in libnetcdf.a(nc4hdf.o)
>> _nc4_open_var_grp2 in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Gopen2", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I32LE_g", referenced from:
>> _H5T_STD_I32LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5DSdetach_scale", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5DSattach_scale", referenced from:
>> _rec_reattach_scales in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pget_layout", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_dxpl_mpio", referenced from:
>> _set_par_access in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_native_type", referenced from:
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_DOUBLE_g", referenced from:
>> _H5T_NATIVE_DOUBLE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I64BE_g", referenced from:
>> _H5T_STD_I64BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Fopen", referenced from:
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5Pset_attr_creation_order", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Aread", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_layout", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Acreate1", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tenum_insert", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_UCHAR_g", referenced from:
>> _H5T_NATIVE_UCHAR_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Tarray_create1", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Gget_num_objs", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5check_version", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5open", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_IEEE_F64LE_g", referenced from:
>> _H5T_IEEE_F64LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_SHORT_g", referenced from:
>> _H5T_NATIVE_SHORT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Fflush", referenced from:
>> _sync_netcdf4_file in libnetcdf.a(nc4file.o)
>> "_H5Aget_num_attrs", referenced from:
>> _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_fapl_mpio", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5Adelete", referenced from:
>> _nc_del_att in libnetcdf.a(nc4attr.o)
>> _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>> "_H5Tcommit1", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I8BE_g", referenced from:
>> _H5T_STD_I8BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Topen2", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Gmove", referenced from:
>> _nc_rename_var in libnetcdf.a(nc4var.o)
>> "_H5Pset_shuffle", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Dcreate1", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_deflate", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_fapl_mpiposix", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5Tenum_create", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Sget_simple_extent_npoints", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_member_value", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Sget_simple_extent_ndims", referenced from:
>> _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5DSget_scale_name", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Eset_auto1", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5Tget_size", referenced from:
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5DSiterate_scales", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5DSget_num_scales", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_member_offset", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_IEEE_F32BE_g", referenced from:
>> _H5T_IEEE_F32BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U16BE_g", referenced from:
>> _H5T_STD_U16BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_nmembers", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5P_CLS_DATASET_CREATE_g", referenced from:
>> _H5P_CLS_DATASET_CREATE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Gcreate2", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tequal", referenced from:
>> _nc4_rec_find_hdf_type in libnetcdf.a(nc4internal.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> "_H5DSis_scale", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U64LE_g", referenced from:
>> _H5T_STD_U64LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U8BE_g", referenced from:
>> _H5T_STD_U8BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I16BE_g", referenced from:
>> _H5T_STD_I16BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_UINT_g", referenced from:
>> _H5T_NATIVE_UINT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Pget_fill_value", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tis_variable_str", referenced from:
>> _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_cache", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5T_NATIVE_LLONG_g", referenced from:
>> _H5T_NATIVE_LLONG_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Aclose", referenced from:
>> _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pset_libver_bounds", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> "_H5Tcopy", referenced from:
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> "_H5Pget_chunk", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_I64LE_g", referenced from:
>> _H5T_STD_I64LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Dclose", referenced from:
>> _nc_rename_att in libnetcdf.a(nc4attr.o)
>> _nc_del_att in libnetcdf.a(nc4attr.o)
>> _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>> _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>> _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>> _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Aget_name", referenced from:
>> _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tset_strpad", referenced from:
>> _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> "_H5Dget_create_plist", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Oget_info_by_idx", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Pfill_value_defined", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_order", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Fclose", referenced from:
>> _nc_create_file in libnetcdf.a(nc4file.o)
>> _nc_open_file in libnetcdf.a(nc4file.o)
>> _close_netcdf4_file in libnetcdf.a(nc4file.o)
>> "_H5Tget_member_name", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_STD_U32BE_g", referenced from:
>> _H5T_STD_U32BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_USHORT_g", referenced from:
>> _H5T_NATIVE_USHORT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5P_CLS_DATASET_XFER_g", referenced from:
>> _H5P_CLS_DATASET_XFER_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Gclose", referenced from:
>> _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Dget_type", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_super", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Tget_array_ndims", referenced from:
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Screate_simple", referenced from:
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>> _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5T_NATIVE_FLOAT_g", referenced from:
>> _H5T_NATIVE_FLOAT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>> "_H5Aopen_idx", referenced from:
>> _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5DSset_scale", referenced from:
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> "_H5Dextend", referenced from:
>> _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>> _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>> ld: symbol(s) not found
>> collect2: ld returned 1 exit status
>> configure:29655: $? = 1
>> configure: failed program was:
>> | /* confdefs.h. */
>> | #define PACKAGE_NAME "MOAB"
>> | #define PACKAGE_TARNAME "moab"
>> | #define PACKAGE_VERSION "3.99"
>> | #define PACKAGE_STRING "MOAB 3.99"
>> | #define PACKAGE_BUGREPORT ""
>> | #define PACKAGE "moab"
>> | #define VERSION "3.99"
>> | #define STDC_HEADERS 1
>> | #define HAVE_SYS_TYPES_H 1
>> | #define HAVE_SYS_STAT_H 1
>> | #define HAVE_STDLIB_H 1
>> | #define HAVE_STRING_H 1
>> | #define HAVE_MEMORY_H 1
>> | #define HAVE_STRINGS_H 1
>> | #define HAVE_INTTYPES_H 1
>> | #define HAVE_STDINT_H 1
>> | #define HAVE_UNISTD_H 1
>> | #define HAVE_DLFCN_H 1
>> | #define LT_OBJDIR ".libs/"
>> | #define MB_VERSION "3.99"
>> | #define MB_VERSION_MAJOR 3
>> | #define MB_VERSION_MINOR 99
>> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> | #define MOAB_HAVE_INTTYPES_H /**/
>> | #define MOAB_HAVE_STDINT_H /**/
>> | #define MOAB_HAVE_SYS_TYPES_H /**/
>> | #define MOAB_HAVE_STDDEF_H /**/
>> | #define MOAB_HAVE_STDLIB_H /**/
>> | #define MOAB_HAVE_SIZE_T /**/
>> | #define MOAB_HAVE_PTRDIFF_T /**/
>> | #define HAVE_HDF5_H 1
>> | #define HAVE_NETCDF_H 1
>> | /* end confdefs.h. */
>> | #include <netcdf.hh>
>> | #ifdef FC_DUMMY_MAIN
>> | #ifndef FC_DUMMY_MAIN_EQ_F77
>> | # ifdef __cplusplus
>> | extern "C"
>> | # endif
>> | int FC_DUMMY_MAIN() { return 1; }
>> | #endif
>> | #endif
>> | int
>> | main ()
>> | {
>> | NcFile ncf("foo",NcFile::ReadOnly);
>> | ;
>> | return 0;
>> | }
>> configure:29669: result: no
>> configure:29671: WARNING: NetCDF C++ API not found
>> configure:29690: error: "NetCDF not found or not working"
>> ## ---------------- ##
>> ## Cache variables. ##
>> ## ---------------- ##
>> ac_cv_build=i386-apple-darwin9.7.0
>> ac_cv_c_compiler_gnu=yes
>> ac_cv_cxx_compiler_gnu=yes
>> ac_cv_env_CCC_set=
>> ac_cv_env_CCC_value=
>> ac_cv_env_CC_set=set
>> ac_cv_env_CC_value=mpicc
>> ac_cv_env_CFLAGS_set=set
>> ac_cv_env_CFLAGS_value='-g -O0'
>> ac_cv_env_CPPFLAGS_set=
>> ac_cv_env_CPPFLAGS_value=
>> ac_cv_env_CPP_set=
>> ac_cv_env_CPP_value=
>> ac_cv_env_CXXCPP_set=
>> ac_cv_env_CXXCPP_value=
>> ac_cv_env_CXXFLAGS_set=set
>> ac_cv_env_CXXFLAGS_value='-g -O0'
>> ac_cv_env_CXX_set=set
>> ac_cv_env_CXX_value=mpicxx
>> ac_cv_env_F77_set=set
>> ac_cv_env_F77_value=mpif77
>> ac_cv_env_FCFLAGS_set=
>> ac_cv_env_FCFLAGS_value=
>> ac_cv_env_FC_set=set
>> ac_cv_env_FC_value=mpif77
>> ac_cv_env_FFLAGS_set=
>> ac_cv_env_FFLAGS_value=
>> ac_cv_env_LDFLAGS_set=
>> ac_cv_env_LDFLAGS_value=
>> ac_cv_env_LIBS_set=
>> ac_cv_env_LIBS_value=
>> ac_cv_env_MPIEXEC_NP_set=
>> ac_cv_env_MPIEXEC_NP_value=
>> ac_cv_env_MPIEXEC_set=
>> ac_cv_env_MPIEXEC_value=
>> ac_cv_env_NP_set=
>> ac_cv_env_NP_value=
>> ac_cv_env_PYTHON_set=
>> ac_cv_env_PYTHON_value=
>> ac_cv_env_QTDIR_set=
>> ac_cv_env_QTDIR_value=
>> ac_cv_env_XMKMF_set=
>> ac_cv_env_XMKMF_value=
>> ac_cv_env_build_alias_set=
>> ac_cv_env_build_alias_value=
>> ac_cv_env_host_alias_set=
>> ac_cv_env_host_alias_value=
>> ac_cv_env_target_alias_set=
>> ac_cv_env_target_alias_value=
>> ac_cv_f77_compiler_gnu=yes
>> ac_cv_fc_compiler_gnu=yes
>> ac_cv_header_Python_h=yes
>> ac_cv_header_dlfcn_h=yes
>> ac_cv_header_hdf5_h=yes
>> ac_cv_header_ieeefp_h=no
>> ac_cv_header_inttypes_h=yes
>> ac_cv_header_memory_h=yes
>> ac_cv_header_mpi_h=yes
>> ac_cv_header_netcdf_h=yes
>> ac_cv_header_numpy_arrayobject_h=yes
>> ac_cv_header_pyconfig_h=yes
>> ac_cv_header_sstream_h=no
>> ac_cv_header_stdc=yes
>> ac_cv_header_stddef_h=yes
>> ac_cv_header_stdint_h=yes
>> ac_cv_header_stdlib_h=yes
>> ac_cv_header_string_h=yes
>> ac_cv_header_strings_h=yes
>> ac_cv_header_strstream=yes
>> ac_cv_header_strstream_h=no
>> ac_cv_header_sys_stat_h=yes
>> ac_cv_header_sys_types_h=yes
>> ac_cv_header_unistd_h=yes
>> ac_cv_host=i386-apple-darwin9.7.0
>> ac_cv_lib_gpfs_gpfs_stat=no
>> ac_cv_lib_hdf5_H5Pset_fapl_mpio=yes
>> ac_cv_lib_hdf5___H5Fopen=yes
>> ac_cv_lib_sz_SZ_Decompress=no
>> ac_cv_lib_z_deflate=yes
>> ac_cv_objext=o
>> ac_cv_path_EGREP='/usr/bin/grep -E'
>> ac_cv_path_FGREP='/usr/bin/grep -F'
>> ac_cv_path_GREP=/usr/bin/grep
>> ac_cv_path_SED=sed
>> ac_cv_path_install='/opt/local/bin/ginstall -c'
>> ac_cv_path_mkdir=/opt/local/bin/gmkdir
>> ac_cv_prog_AWK=gawk
>> ac_cv_prog_CPP='mpicc -E'
>> ac_cv_prog_CXXCPP='mpicxx -E'
>> ac_cv_prog_MPIEXEC=mpiexec
>> ac_cv_prog_PYTHON=python
>> ac_cv_prog_SED=sed
>> ac_cv_prog_ZCAT='gunzip -c'
>> ac_cv_prog_ac_ct_AR=ar
>> ac_cv_prog_ac_ct_DSYMUTIL=dsymutil
>> ac_cv_prog_ac_ct_LIPO=lipo
>> ac_cv_prog_ac_ct_NMEDIT=nmedit
>> ac_cv_prog_ac_ct_OTOOL=otool
>> ac_cv_prog_ac_ct_RANLIB=ranlib
>> ac_cv_prog_ac_ct_STRIP=strip
>> ac_cv_prog_cc_c89=
>> ac_cv_prog_cc_g=yes
>> ac_cv_prog_cxx_g=yes
>> ac_cv_prog_f77_g=yes
>> ac_cv_prog_fc_g=yes
>> ac_cv_prog_make_make_set=yes
>> ac_cv_target=i386-apple-darwin9.7.0
>> ac_cv_type_ptrdiff_t=yes
>> ac_cv_type_size_t=yes
>> am_cv_CC_dependencies_compiler_type=gcc3
>> am_cv_CXX_dependencies_compiler_type=gcc3
>> lt_cv_apple_cc_single_mod=yes
>> lt_cv_deplibs_check_method=pass_all
>> lt_cv_file_magic_cmd='$MAGIC_CMD'
>> lt_cv_file_magic_test_file=
>> lt_cv_ld_exported_symbols_list=yes
>> lt_cv_ld_reload_flag=-r
>> lt_cv_nm_interface='BSD nm'
>> lt_cv_objdir=.libs
>> lt_cv_path_LD=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
>> lt_cv_path_LDCXX=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
>> lt_cv_path_NM='/usr/bin/nm -p'
>> lt_cv_prog_compiler_c_o=yes
>> lt_cv_prog_compiler_c_o_CXX=yes
>> lt_cv_prog_compiler_c_o_F77=yes
>> lt_cv_prog_compiler_c_o_FC=yes
>> lt_cv_prog_compiler_pic_works=yes
>> lt_cv_prog_compiler_pic_works_CXX=yes
>> lt_cv_prog_compiler_pic_works_F77=yes
>> lt_cv_prog_compiler_pic_works_FC=yes
>> lt_cv_prog_compiler_rtti_exceptions=no
>> lt_cv_prog_compiler_static_works=no
>> lt_cv_prog_compiler_static_works_CXX=no
>> lt_cv_prog_compiler_static_works_F77=no
>> lt_cv_prog_compiler_static_works_FC=no
>> lt_cv_prog_gnu_ld=no
>> lt_cv_prog_gnu_ldcxx=no
>> lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST]
>> [BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/
>> p'\'''
>> lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \
>> ([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \
>> ([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
>> lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e
>> '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/
>> ^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\''
>> -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&
>> \2},/p'\'''
>> lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/
>> extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char
>> \1;/p'\'''
>> lt_cv_sys_max_cmd_len=196608
>> mk_cv_cxx_unordered_map=std::tr1
>> snl_cv_template_func_specialization=yes
>> snl_cv_template_specialization=yes
>> ## ----------------- ##
>> ## Output variables. ##
>> ## ----------------- ##
>> ACLOCAL='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing
>> --run aclocal-1.10'
>> AMDEPBACKSLASH='\'
>> AMDEP_FALSE='#'
>> AMDEP_TRUE=''
>> AMTAR='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing --
>> run tar'
>> AM_CFLAGS=''
>> AM_CPPFLAGS=' -I/Users/likask/MyBuild/hdf5-1.8.3_darwin/include -
>> isystem /Users/likask/MyBuild/hdf5-1.8.3_darwin/include '
>> AM_CXXFLAGS=''
>> AM_LDFLAGS=''
>> AR='ar'
>> AUTOCONF='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing
>> --run autoconf'
>> AUTOHEADER='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/
>> missing --run autoheader'
>> AUTOMAKE='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing
>> --run automake-1.10'
>> AWK='gawk'
>> BABEL_DIR=''
>> CC='mpicc'
>> CCDEPMODE='depmode=gcc3'
>> CFLAGS='-g -O0 -Wall -pipe'
>> CGM_CPPFLAGS=''
>> CGM_LDFLAGS=''
>> CGM_LIBS=''
>> CGM_LTFLAGS=''
>> CHACO_INCLUDES=''
>> CHACO_LIBS=''
>> CPP='mpicc -E'
>> CPPFLAGS=' -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/
>> unordered_map'
>> CXX='mpicxx'
>> CXXCPP='mpicxx -E'
>> CXXDEPMODE='depmode=gcc3'
>> CXXFLAGS='-g -O0 -Wall -pipe'
>> CYGPATH_W='echo'
>> DEFINES=' -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION -
>> DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL'
>> DEFS=''
>> DEPDIR='.deps'
>> DISTCHECK_CONFIGURE_FLAGS=' --enable-imesh="nofortran" --with-
>> hdf5="/Users/likask/MyBuild/hdf5-1.8.3_darwin" --with-netcdf="/
>> Users/likask/MyBuild/netcdf-4.0.1_darwin"'
>> DOXYGEN=''
>> DSYMUTIL='dsymutil'
>> DUMPBIN=''
>> ECHO_C='\c'
>> ECHO_N=''
>> ECHO_T=''
>> EGREP='/usr/bin/grep -E'
>> ENABLE_DOXYGEN_FALSE=''
>> ENABLE_DOXYGEN_TRUE=''
>> ENABLE_dagmc_FALSE=''
>> ENABLE_dagmc_TRUE=''
>> ENABLE_gsets_FALSE=''
>> ENABLE_gsets_TRUE=''
>> ENABLE_hexmodops_FALSE=''
>> ENABLE_hexmodops_TRUE=''
>> ENABLE_imesh_FALSE='#'
>> ENABLE_imesh_TRUE=''
>> ENABLE_mbchaco_FALSE=''
>> ENABLE_mbchaco_TRUE=''
>> ENABLE_mbconvert_FALSE=''
>> ENABLE_mbconvert_TRUE=''
>> ENABLE_mbcoupler_FALSE=''
>> ENABLE_mbcoupler_TRUE=''
>> ENABLE_mbdepth_FALSE=''
>> ENABLE_mbdepth_TRUE=''
>> ENABLE_mbperf_FALSE=''
>> ENABLE_mbperf_TRUE=''
>> ENABLE_mbsize_FALSE=''
>> ENABLE_mbsize_TRUE=''
>> ENABLE_mbskin_FALSE=''
>> ENABLE_mbskin_TRUE=''
>> ENABLE_mbsurfplot_FALSE=''
>> ENABLE_mbsurfplot_TRUE=''
>> ENABLE_mbtagprop_FALSE=''
>> ENABLE_mbtagprop_TRUE=''
>> ENABLE_mbzoltan_FALSE=''
>> ENABLE_mbzoltan_TRUE=''
>> ENABLE_mcnpmit_FALSE=''
>> ENABLE_mcnpmit_TRUE=''
>> ENABLE_pytaps_FALSE=''
>> ENABLE_pytaps_TRUE='#'
>> ENABLE_qvdual_FALSE=''
>> ENABLE_qvdual_TRUE=''
>> ENABLE_spheredecomp_FALSE=''
>> ENABLE_spheredecomp_TRUE=''
>> EXEEXT=''
>> EXPORT_LDFLAGS=' -L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib'
>> EXPORT_LTFLAGS=''
>> F77='mpif77'
>> FC='mpif77'
>> FCFLAGS=' -O2 -DNDEBUG'
>> FCLIBS=''
>> FFLAGS='-g -O2'
>> FGREP='/usr/bin/grep -F'
>> GREP='/usr/bin/grep'
>> HAVE_CGM_FALSE=''
>> HAVE_CGM_TRUE=''
>> HAVE_ZCAT_FALSE=''
>> HAVE_ZCAT_TRUE='#'
>> HDF5_FILE_FALSE='#'
>> HDF5_FILE_TRUE=''
>> HDF5_LIBS=' -lz -lhdf5'
>> INCLUDES=''
>> INSTALL_DATA='${INSTALL} -m 644'
>> INSTALL_PROGRAM='${INSTALL}'
>> INSTALL_SCRIPT='${INSTALL}'
>> INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
>> LD='/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld'
>> LDFLAGS=''
>> LIBOBJS=''
>> LIBS='-lm'
>> LIBTOOL='$(SHELL) $(top_builddir)/libtool'
>> LIPO='lipo'
>> LN_S='ln -s'
>> LTLIBOBJS=''
>> MAKEINFO='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing
>> --run makeinfo'
>> MKDIR_P='/opt/local/bin/gmkdir -p'
>> MOAB_CGM_DEFINES=''
>> MOAB_CXX_LIBS=''
>> MOAB_CXX_LINKFLAGS=''
>> MOC=''
>> MPIEXEC='mpiexec'
>> MPIEXEC_NP='-np'
>> NETCDF_FILE_FALSE=''
>> NETCDF_FILE_TRUE=''
>> NETCDF_LIBS=''
>> NM='/usr/bin/nm -p'
>> NMEDIT='nmedit'
>> NP='2'
>> NUMPY_DIR='/Library/Frameworks/Python.framework/Versions/4.3.0/lib/
>> python2.5/site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/
>> numpy/core/include' OBJDUMP='false'
>> OBJEXT='o'
>> OTOOL64=':'
>> OTOOL='otool'
>> PACKAGE='moab'
>> PACKAGE_BUGREPORT=''
>> PACKAGE_NAME='MOAB'
>> PACKAGE_STRING='MOAB 3.99'
>> PACKAGE_TARNAME='moab'
>> PACKAGE_VERSION='3.99'
>> PARALLEL_FALSE='#'
>> PARALLEL_HDF5_FALSE='#'
>> PARALLEL_HDF5_TRUE=''
>> PARALLEL_TRUE=''
>> PATH_SEPARATOR=':'
>> PYTHON='python'
>> PYTHON_DIR='PYCONFIG_DIR'
>> QTDIR=''
>> QVDUAL_INCLUDES=''
>> QVDUAL_LIBS=''
>> RANLIB='ranlib'
>> SED='sed'
>> SET_MAKE=''
>> SHELL='/bin/sh'
>> STRIP='strip'
>> UIC=''
>> USE_BABEL=''
>> USE_BABEL_FALSE=''
>> USE_BABEL_TRUE=''
>> USE_MPIEXEC_FALSE='#'
>> USE_MPIEXEC_TRUE=''
>> USE_MPI_FALSE='#'
>> USE_MPI_TRUE=''
>> VERSION='3.99'
>> VTK_LIB_DIR=''
>> XMKMF=''
>> X_CFLAGS=''
>> X_EXTRA_LIBS=''
>> X_LIBS=''
>> X_PRE_LIBS=''
>> ZCAT='gunzip -c'
>> ZOLTAN_INC_FLAGS=''
>> ZOLTAN_LIBS=''
>> ZOLTAN_LIB_FLAGS=''
>> ac_ct_CC=''
>> ac_ct_CXX=''
>> ac_ct_DUMPBIN=''
>> ac_ct_F77=''
>> ac_ct_FC=''
>> am__fastdepCC_FALSE='#'
>> am__fastdepCC_TRUE=''
>> am__fastdepCXX_FALSE='#'
>> am__fastdepCXX_TRUE=''
>> am__include='include'
>> am__isrc=''
>> am__leading_dot='.'
>> am__quote=''
>> am__tar='${AMTAR} chof - "$$tardir"'
>> am__untar='${AMTAR} xf -'
>> bindir='${exec_prefix}/bin'
>> build='i386-apple-darwin9.7.0'
>> build_alias=''
>> build_cpu='i386'
>> build_os='darwin9.7.0'
>> build_vendor='apple'
>> datadir='${datarootdir}'
>> datarootdir='${prefix}/share'
>> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
>> dvidir='${docdir}'
>> exec_prefix='NONE'
>> host='i386-apple-darwin9.7.0'
>> host_alias=''
>> host_cpu='i386'
>> host_os='darwin9.7.0'
>> host_vendor='apple'
>> htmldir='${docdir}'
>> includedir='${prefix}/include'
>> infodir='${datarootdir}/info'
>> install_sh='$(SHELL) /Users/likask/MyBuild/src/moab-svn/trunk/
>> install-sh'
>> libdir='${exec_prefix}/lib'
>> libexecdir='${exec_prefix}/libexec'
>> localedir='${datarootdir}/locale'
>> localstatedir='${prefix}/var'
>> lt_ECHO='/bin/echo'
>> mandir='${datarootdir}/man'
>> mkdir_p='/opt/local/bin/gmkdir -p'
>> oldincludedir='/usr/include'
>> pdfdir='${docdir}'
>> prefix='/Users/likask/MyBuild/moab-svn_darwin'
>> program_transform_name='s,x,x,'
>> psdir='${docdir}'
>> pylibdir='${exec_prefix}/lib/python2.5/site-packages'
>> sbindir='${exec_prefix}/sbin'
>> sharedstatedir='${prefix}/com'
>> sysconfdir='${prefix}/etc'
>> target='i386-apple-darwin9.7.0'
>> target_alias=''
>> target_cpu='i386'
>> target_os='darwin9.7.0'
>> target_vendor='apple'
>> ## ----------- ##
>> ## confdefs.h. ##
>> ## ----------- ##
>> #define PACKAGE_NAME "MOAB"
>> #define PACKAGE_TARNAME "moab"
>> #define PACKAGE_VERSION "3.99"
>> #define PACKAGE_STRING "MOAB 3.99"
>> #define PACKAGE_BUGREPORT ""
>> #define PACKAGE "moab"
>> #define VERSION "3.99"
>> #define STDC_HEADERS 1
>> #define HAVE_SYS_TYPES_H 1
>> #define HAVE_SYS_STAT_H 1
>> #define HAVE_STDLIB_H 1
>> #define HAVE_STRING_H 1
>> #define HAVE_MEMORY_H 1
>> #define HAVE_STRINGS_H 1
>> #define HAVE_INTTYPES_H 1
>> #define HAVE_STDINT_H 1
>> #define HAVE_UNISTD_H 1
>> #define HAVE_DLFCN_H 1
>> #define LT_OBJDIR ".libs/"
>> #define MB_VERSION "3.99"
>> #define MB_VERSION_MAJOR 3
>> #define MB_VERSION_MINOR 99
>> #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
>> #define MOAB_HAVE_INTTYPES_H /**/
>> #define MOAB_HAVE_STDINT_H /**/
>> #define MOAB_HAVE_SYS_TYPES_H /**/
>> #define MOAB_HAVE_STDDEF_H /**/
>> #define MOAB_HAVE_STDLIB_H /**/
>> #define MOAB_HAVE_SIZE_T /**/
>> #define MOAB_HAVE_PTRDIFF_T /**/
>> #define HAVE_HDF5_H 1
>> #define HAVE_NETCDF_H 1
>
> --
> ================================================================
> "You will keep in perfect peace him whose mind is
> steadfast, because he trusts in you." Isaiah 26:3
>
> Tim Tautges Argonne National Laboratory
> (tautges at mcs.anl.gov) (telecommuting from UW-Madison)
> phone: (608) 263-8485 1500 Engineering Dr.
> fax: (608) 263-4499 Madison, WI 53706
>
>
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