[MOAB-dev] failing configure (netcdf++ and hdf5)

[Tim Tautges]

Hi Lukasz,
   I'm not sure that version is reliable (I should really take it off 
the wiki site...).  However, from the output below, it appears that 
netcdf isn't built right on your machine.  Note that MOAB requires 
netcdf's C++ interface, which isn't built by default with netcdf. 
However, there were also issues with our configure stuff not checking 
for netcdf properly, so it might actually be built correctly.  You can 
tell by looking for -lnetcdf_c++ in the link line for some of the 
utilities in the tools/ subdirectory.

Note, I'm just about to commit more changes to the parallel branch that 
make your cub_trefftz.h5m file load properly (though there's still 
something odd with other files); maybe you're not using the trunk 
because of bugs in the parallel read?

- tim

Lukasz Kaczmarczyk wrote:
> Hello
> I spotted problem with netcdf++ and hdf5 configure. My version netcdf++ 
> has to be linked with hdf5 libraries. I have temporary solution, I set  
> LDFLAGS="-L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib -lhdf5_hl -lhdf5 
> -lz"
> 
> This file contains any messages produced by compilers while
> running configure, to aid debugging if configure makes a mistake.
> 
> It was created by MOAB configure 3.99, which was
> generated by GNU Autoconf 2.63.  Invocation command line was
> 
>   $ ./configure CFLAGS=-g -O0 CXXFLAGS=-g -O0 CC=mpicc CXX=mpicxx 
> F77=mpif77 FC=mpif77 --prefix=/Users/likask/MyBuild/moab-svn_darwin 
> --with-hdf5=/Users/likask/MyBuild/hdf5-1.8.3_darwin 
> --with-netcdf=/Users/likask/MyBuild/netcdf-4.0.1_darwin 
> --with-zoltan=/Users/likask/MyBuild/Zoltan_v3.1_darwin 
> --with-parmetis=/Users/likask/MyBuild/src/ParMetis-3.1.1 
> --with-mpi=/Users/likask/MyBuild/openmpi-1.3.2_darwin --enable-mbzoltan 
> --enable-imesh=nofortran --no-create
> 
> ## --------- ##
> ## Platform. ##
> ## --------- ##
> 
> hostname = mackiss
> uname -m = i386
> uname -r = 9.7.0
> uname -s = Darwin
> uname -v = Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009; 
> root:xnu-1228.12.14~1/RELEASE_I386
> 
> /usr/bin/uname -p = i386
> /bin/uname -X     = unknown
> 
> /bin/arch              = unknown
> /usr/bin/arch -k       = unknown
> /usr/convex/getsysinfo = unknown
> /usr/bin/hostinfo      = Mach kernel version:
>      Darwin Kernel Version 9.7.0: Tue Mar 31 22:52:17 PDT 2009; 
> root:xnu-1228.12.14~1/RELEASE_I386
> Kernel configured for up to 2 processors.
> 2 processors are physically available.
> 2 processors are logically available.
> Processor type: i486 (Intel 80486)
> Processors active: 0 1
> Primary memory available: 2.00 gigabytes
> Default processor set: 66 tasks, 329 threads, 2 processors
> Load average: 0.98, Mach factor: 1.30
> /bin/machine           = unknown
> /usr/bin/oslevel       = unknown
> /bin/universe          = unknown
> 
> PATH: /Library/Frameworks/Python.framework/Versions/Current/bin
> PATH: /Users/likask/MyBuild/openmpi-1.3.2_darwin/bin
> PATH: /opt/toolworks/totalview.8.6.0-3/bin
> PATH: /opt/intel/idbe/10.1.017/bin
> PATH: /opt/intel/fc/10.1.017/bin
> PATH: /opt/intel/cc/10.1.015/bin
> PATH: /Users/likask/MyBuild/src/YaFFEMS/bin
> PATH: /Users/likask/MyBuild/bin
> PATH: /opt/local/dx/bin
> PATH: /opt/local/dx/bin_macos
> PATH: /opt/local/bin
> PATH: /opt/local/sbin
> PATH: /usr/bin
> PATH: /bin
> PATH: /usr/sbin
> PATH: /sbin
> PATH: /usr/local/bin
> PATH: /usr/texbin
> PATH: /usr/X11/bin
> 
> 
> ## ----------- ##
> ## Core tests. ##
> ## ----------- ##
> 
> configure:2324: checking build system type
> configure:2342: result: i386-apple-darwin9.7.0
> configure:2364: checking host system type
> configure:2379: result: i386-apple-darwin9.7.0
> configure:2401: checking target system type
> configure:2416: result: i386-apple-darwin9.7.0
> configure:2460: checking for a BSD-compatible install
> configure:2528: result: /opt/local/bin/ginstall -c
> configure:2539: checking whether build environment is sane
> configure:2582: result: yes
> configure:2607: checking for a thread-safe mkdir -p
> configure:2646: result: /opt/local/bin/gmkdir -p
> configure:2659: checking for gawk
> configure:2675: found /opt/local/bin/gawk
> configure:2686: result: gawk
> configure:2697: checking whether make sets $(MAKE)
> configure:2719: result: yes
> configure:2906: checking for sed
> configure:2922: found /usr/bin/sed
> configure:2934: result: sed
> configure:2973: checking if iMesh support is to be built
> configure:2975: result: yes
> configure:3004: checking for style of include used by make
> configure:3032: result: GNU
> configure:3258: checking for C compiler version
> configure:3266: mpicc --version >&5
> i686-apple-darwin9-gcc-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
> Copyright (C) 2005 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> 
> configure:3270: $? = 0
> configure:3277: mpicc -v >&5
> Using built-in specs.
> Target: i686-apple-darwin9
> Configured with: /var/tmp/gcc/gcc-5493~1/src/configure 
> --disable-checking -enable-werror --prefix=/usr --mandir=/share/man 
> --enable-languages=c,objc,c++,obj-c++ 
> --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ 
> --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib 
> --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic 
> --host=i686-apple-darwin9 --target=i686-apple-darwin9
> Thread model: posix
> gcc version 4.0.1 (Apple Inc. build 5493)
> configure:3281: $? = 0
> configure:3288: mpicc -V >&5
> gcc-4.0: argument to `-V' is missing
> configure:3292: $? = 1
> configure:3315: checking for C compiler default output file name
> configure:3337: mpicc -g -O0   conftest.c  >&5
> configure:3341: $? = 0
> configure:3379: result: a.out
> configure:3398: checking whether the C compiler works
> configure:3408: ./a.out
> configure:3412: $? = 0
> configure:3431: result: yes
> configure:3438: checking whether we are cross compiling
> configure:3440: result: no
> configure:3443: checking for suffix of executables
> configure:3450: mpicc -o conftest -g -O0   conftest.c  >&5
> configure:3454: $? = 0
> configure:3480: result:
> configure:3486: checking for suffix of object files
> configure:3512: mpicc -c -g -O0  conftest.c >&5
> configure:3516: $? = 0
> configure:3541: result: o
> configure:3545: checking whether we are using the GNU C compiler
> configure:3574: mpicc -c -g -O0  conftest.c >&5
> configure:3581: $? = 0
> configure:3598: result: yes
> configure:3607: checking whether mpicc accepts -g
> configure:3637: mpicc -c -g  conftest.c >&5
> configure:3644: $? = 0
> configure:3745: result: yes
> configure:3762: checking for mpicc option to accept ISO C89
> configure:3836: mpicc  -c -g -O0  conftest.c >&5
> configure:3843: $? = 0
> configure:3866: result: none needed
> configure:3886: checking dependency style of mpicc
> configure:3977: result: gcc3
> configure:3997: checking for known C compilers
> configure:4822: result: GNU
> configure:4830: checking for known compiler/OS combinations
> configure:4891: result: GNU:i386
> configure:4900: checking how to run the C preprocessor
> configure:4940: mpicc -E  conftest.c
> configure:4947: $? = 0
> configure:4978: mpicc -E  conftest.c
> conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
> configure:4985: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | /* end confdefs.h.  */
> | #include <ac_nonexistent.h>
> configure:5018: result: mpicc -E
> configure:5047: mpicc -E  conftest.c
> configure:5054: $? = 0
> configure:5085: mpicc -E  conftest.c
> conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
> configure:5092: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | /* end confdefs.h.  */
> | #include <ac_nonexistent.h>
> configure:5244: checking for C++ compiler version
> configure:5252: mpicxx --version >&5
> i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
> Copyright (C) 2005 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> 
> configure:5256: $? = 0
> configure:5263: mpicxx -v >&5
> Using built-in specs.
> Target: i686-apple-darwin9
> Configured with: /var/tmp/gcc/gcc-5493~1/src/configure 
> --disable-checking -enable-werror --prefix=/usr --mandir=/share/man 
> --enable-languages=c,objc,c++,obj-c++ 
> --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ 
> --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib 
> --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic 
> --host=i686-apple-darwin9 --target=i686-apple-darwin9
> Thread model: posix
> gcc version 4.0.1 (Apple Inc. build 5493)
> configure:5267: $? = 0
> configure:5274: mpicxx -V >&5
> g++-4.0: argument to `-V' is missing
> configure:5278: $? = 1
> configure:5281: checking whether we are using the GNU C++ compiler
> configure:5310: mpicxx -c -g -O0  conftest.cpp >&5
> configure:5317: $? = 0
> configure:5334: result: yes
> configure:5343: checking whether mpicxx accepts -g
> configure:5373: mpicxx -c -g  conftest.cpp >&5
> configure:5380: $? = 0
> configure:5481: result: yes
> configure:5506: checking dependency style of mpicxx
> configure:5597: result: gcc3
> configure:5617: checking how to run the C++ preprocessor
> configure:5653: mpicxx -E  conftest.cpp
> configure:5660: $? = 0
> configure:5691: mpicxx -E  conftest.cpp
> conftest.cpp:10:28: error: ac_nonexistent.h: No such file or directory
> configure:5698: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | /* end confdefs.h.  */
> | #include <ac_nonexistent.h>
> configure:5731: result: mpicxx -E
> configure:5760: mpicxx -E  conftest.cpp
> configure:5767: $? = 0
> configure:5798: mpicxx -E  conftest.cpp
> conftest.cpp:10:28: error: ac_nonexistent.h: No such file or directory
> configure:5805: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | /* end confdefs.h.  */
> | #include <ac_nonexistent.h>
> configure:5848: checking for known c++ compilers
> configure:6639: result: GNU
> configure:6647: checking for known compiler/OS combinations
> configure:6709: result: GNU:i386
> configure:7374: checking whether ln -s works
> configure:7378: result: yes
> configure:7385: checking whether make sets $(MAKE)
> configure:7407: result: yes
> configure:7472: checking for a sed that does not truncate output
> configure:7538: result: sed
> configure:7556: checking for grep that handles long lines and -e
> configure:7616: result: /usr/bin/grep
> configure:7621: checking for egrep
> configure:7685: result: /usr/bin/grep -E
> configure:7690: checking for fgrep
> configure:7754: result: /usr/bin/grep -F
> configure:7789: checking for ld used by mpicc
> configure:7856: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
> configure:7865: checking if the linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) is GNU ld
> configure:7880: result: no
> configure:7892: checking for BSD- or MS-compatible name lister (nm)
> configure:7941: result: /usr/bin/nm -p
> configure:8059: checking the name lister (/usr/bin/nm -p) interface
> configure:8066: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:8069: /usr/bin/nm -p "conftest.o"
> configure:8072: output
> 0000016c D _some_variable
> configure:8079: result: BSD nm
> configure:8083: checking the maximum length of command line arguments
> configure:8203: result: 196608
> configure:8220: checking whether the shell understands some XSI constructs
> configure:8230: result: yes
> configure:8234: checking whether the shell understands "+="
> configure:8240: result: yes
> configure:8275: checking for 
> /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld option to reload object files
> configure:8282: result: -r
> configure:8351: checking for objdump
> configure:8381: result: no
> configure:8410: checking how to recognize dependent libraries
> configure:8606: result: pass_all
> configure:8666: checking for ar
> configure:8682: found /usr/bin/ar
> configure:8693: result: ar
> configure:8771: checking for strip
> configure:8787: found /usr/bin/strip
> configure:8798: result: strip
> configure:8870: checking for ranlib
> configure:8886: found /usr/bin/ranlib
> configure:8897: result: ranlib
> configure:8987: checking command to parse /usr/bin/nm -p output from 
> mpicc object
> configure:9105: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:9108: $? = 0
> configure:9112: /usr/bin/nm -p conftest.o \| sed -n -e 's/^.*[     
> ]\([BCDEGRST][BCDEGRST]*\)[     ][     ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 
> \2 \2/p' \> conftest.nm
> configure:9115: $? = 0
> cannot find nm_test_var in conftest.nm
> configure:9105: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:9108: $? = 0
> configure:9112: /usr/bin/nm -p conftest.o \| sed -n -e 's/^.*[     
> ]\([BCDEGRST][BCDEGRST]*\)[     ][     ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 
> _\2 \2/p' \> conftest.nm
> configure:9115: $? = 0
> configure:9169: mpicc -o conftest -g -O0 -Wall -pipe   conftest.c 
> conftstm.o >&5
> configure:9172: $? = 0
> configure:9210: result: ok
> configure:9503: checking for dsymutil
> configure:9519: found /usr/bin/dsymutil
> configure:9530: result: dsymutil
> configure:9595: checking for nmedit
> configure:9611: found /usr/bin/nmedit
> configure:9622: result: nmedit
> configure:9687: checking for lipo
> configure:9703: found /usr/bin/lipo
> configure:9714: result: lipo
> configure:9779: checking for otool
> configure:9795: found /usr/bin/otool
> configure:9806: result: otool
> configure:9871: checking for otool64
> configure:9901: result: no
> configure:9946: checking for -single_module linker flag
> mpicc -g -O0 -Wall -pipe  -o libconftest.dylib -dynamiclib 
> -Wl,-single_module conftest.c
> configure:9973: result: yes
> configure:9975: checking for -exported_symbols_list linker flag
> configure:10005: mpicc -o conftest -g -O0 -Wall -pipe   
> -Wl,-exported_symbols_list,conftest.sym conftest.c -lm >&5
> configure:10012: $? = 0
> configure:10034: result: yes
> configure:10072: checking for ANSI C header files
> configure:10102: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10109: $? = 0
> configure:10208: mpicc -o conftest -g -O0 -Wall -pipe   conftest.c -lm >&5
> configure:10212: $? = 0
> configure:10218: ./conftest
> configure:10222: $? = 0
> configure:10240: result: yes
> configure:10264: checking for sys/types.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for sys/stat.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for stdlib.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for string.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for memory.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for strings.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for inttypes.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for stdint.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10264: checking for unistd.h
> configure:10285: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10292: $? = 0
> configure:10309: result: yes
> configure:10327: checking for dlfcn.h
> configure:10348: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:10355: $? = 0
> configure:10372: result: yes
> configure:10499: checking for C++ compiler version
> configure:10507: mpicxx --version >&5
> i686-apple-darwin9-g++-4.0.1 (GCC) 4.0.1 (Apple Inc. build 5493)
> Copyright (C) 2005 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
> 
> configure:10511: $? = 0
> configure:10518: mpicxx -v >&5
> Using built-in specs.
> Target: i686-apple-darwin9
> Configured with: /var/tmp/gcc/gcc-5493~1/src/configure 
> --disable-checking -enable-werror --prefix=/usr --mandir=/share/man 
> --enable-languages=c,objc,c++,obj-c++ 
> --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ 
> --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib 
> --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic 
> --host=i686-apple-darwin9 --target=i686-apple-darwin9
> Thread model: posix
> gcc version 4.0.1 (Apple Inc. build 5493)
> configure:10522: $? = 0
> configure:10529: mpicxx -V >&5
> g++-4.0: argument to `-V' is missing
> configure:10533: $? = 1
> configure:10536: checking whether we are using the GNU C++ compiler
> configure:10589: result: yes
> configure:10598: checking whether mpicxx accepts -g
> configure:10736: result: yes
> configure:10761: checking dependency style of mpicxx
> configure:10852: result: gcc3
> configure:10875: checking how to run the C++ preprocessor
> configure:10989: result: mpicxx -E
> configure:11018: mpicxx -E  conftest.cpp
> configure:11025: $? = 0
> configure:11056: mpicxx -E  conftest.cpp
> conftest.cpp:21:28: error: ac_nonexistent.h: No such file or directory
> configure:11063: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | /* end confdefs.h.  */
> | #include <ac_nonexistent.h>
> configure:11211: checking for Fortran 77 compiler version
> configure:11219: mpif77 --version >&5
> GNU Fortran (GCC) 4.3.0 20070810 (experimental)
> Copyright (C) 2007 Free Software Foundation, Inc.
> 
> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
> You may redistribute copies of GNU Fortran
> under the terms of the GNU General Public License.
> For more information about these matters, see the file named COPYING
> 
> configure:11223: $? = 0
> configure:11230: mpif77 -v >&5
> Using built-in specs.
> Target: i386-apple-darwin8.10.1
> Configured with: ../gcc-4.3-20070810/configure --enable-threads=posix 
> --enable-languages=fortran
> Thread model: posix
> gcc version 4.3.0 20070810 (experimental)
> configure:11234: $? = 0
> configure:11241: mpif77 -V >&5
> gfortran: '-V' option must have argument
> configure:11245: $? = 1
> configure:11253: checking whether we are using the GNU Fortran 77 compiler
> configure:11272: mpif77 -c  conftest.F >&5
> configure:11279: $? = 0
> configure:11296: result: yes
> configure:11302: checking whether mpif77 accepts -g
> configure:11319: mpif77 -c -g conftest.f >&5
> configure:11326: $? = 0
> configure:11342: result: yes
> configure:11485: checking for Fortran compiler version
> configure:11493: mpif77 --version >&5
> GNU Fortran (GCC) 4.3.0 20070810 (experimental)
> Copyright (C) 2007 Free Software Foundation, Inc.
> 
> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
> You may redistribute copies of GNU Fortran
> under the terms of the GNU General Public License.
> For more information about these matters, see the file named COPYING
> 
> configure:11497: $? = 0
> configure:11504: mpif77 -v >&5
> Using built-in specs.
> Target: i386-apple-darwin8.10.1
> Configured with: ../gcc-4.3-20070810/configure --enable-threads=posix 
> --enable-languages=fortran
> Thread model: posix
> gcc version 4.3.0 20070810 (experimental)
> configure:11508: $? = 0
> configure:11515: mpif77 -V >&5
> gfortran: '-V' option must have argument
> configure:11519: $? = 1
> configure:11527: checking whether we are using the GNU Fortran compiler
> configure:11546: mpif77 -c  -O2 -DNDEBUG  conftest.F >&5
> configure:11553: $? = 0
> configure:11570: result: yes
> configure:11576: checking whether mpif77 accepts -g
> configure:11593: mpif77 -c -g  conftest.f >&5
> configure:11600: $? = 0
> configure:11616: result: yes
> configure:11789: checking for objdir
> configure:11804: result: .libs
> configure:12100: checking if mpicc supports -fno-rtti -fno-exceptions
> configure:12118: mpicc -c -g -O0 -Wall -pipe  -fno-rtti -fno-exceptions 
> conftest.c >&5
> cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ 
> but not for C
> configure:12122: $? = 0
> configure:12135: result: no
> configure:12155: checking for mpicc option to produce PIC
> configure:12427: result: -fno-common -DPIC
> configure:12439: checking if mpicc PIC flag -fno-common -DPIC works
> configure:12457: mpicc -c -g -O0 -Wall -pipe  -fno-common -DPIC -DPIC 
> conftest.c >&5
> configure:12461: $? = 0
> configure:12474: result: yes
> configure:12498: checking if mpicc static flag -static works
> configure:12526: result: no
> configure:12541: checking if mpicc supports -c -o file.o
> configure:12562: mpicc -c -g -O0 -Wall -pipe  -o out/conftest2.o 
> conftest.c >&5
> configure:12566: $? = 0
> configure:12588: result: yes
> configure:12596: checking if mpicc supports -c -o file.o
> configure:12643: result: yes
> configure:12676: checking whether the mpicc linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
> configure:13750: result: yes
> configure:13989: checking dynamic linker characteristics
> configure:14672: result: darwin9.7.0 dyld
> configure:14774: checking how to hardcode library paths into programs
> configure:14799: result: immediate
> configure:15632: checking whether stripping libraries is possible
> configure:15646: result: yes
> configure:15672: checking if libtool supports shared libraries
> configure:15674: result: yes
> configure:15677: checking whether to build shared libraries
> configure:15698: result: no
> configure:15701: checking whether to build static libraries
> configure:15705: result: yes
> configure:15855: checking for ld used by mpicxx
> configure:15922: result: /usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
> configure:15931: checking if the linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) is GNU ld
> configure:15946: result: no
> configure:16001: checking whether the mpicxx linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
> configure:16976: result: yes
> configure:17004: mpicxx -c -g -O0 -Wall -pipe  conftest.cpp >&5
> configure:17007: $? = 0
> configure:17189: checking for mpicxx option to produce PIC
> configure:17506: result: -fno-common -DPIC
> configure:17515: checking if mpicxx PIC flag -fno-common -DPIC works
> configure:17533: mpicxx -c -g -O0 -Wall -pipe  -fno-common -DPIC -DPIC 
> conftest.cpp >&5
> configure:17537: $? = 0
> configure:17550: result: yes
> configure:17571: checking if mpicxx static flag -static works
> configure:17599: result: no
> configure:17611: checking if mpicxx supports -c -o file.o
> configure:17632: mpicxx -c -g -O0 -Wall -pipe  -o out/conftest2.o 
> conftest.cpp >&5
> configure:17636: $? = 0
> configure:17658: result: yes
> configure:17663: checking if mpicxx supports -c -o file.o
> configure:17710: result: yes
> configure:17740: checking whether the mpicxx linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
> configure:17766: result: yes
> configure:17903: checking dynamic linker characteristics
> configure:18534: result: darwin9.7.0 dyld
> configure:18585: checking how to hardcode library paths into programs
> configure:18610: result: immediate
> configure:18751: checking if libtool supports shared libraries
> configure:18753: result: yes
> configure:18756: checking whether to build shared libraries
> configure:18776: result: no
> configure:18779: checking whether to build static libraries
> configure:18783: result: yes
> configure:18797: checking for mpif77 option to produce PIC
> configure:19069: result: -fno-common
> configure:19078: checking if mpif77 PIC flag -fno-common works
> configure:19096: mpif77 -c -g -O2 -fno-common conftest.f >&5
> configure:19100: $? = 0
> configure:19113: result: yes
> configure:19134: checking if mpif77 static flag -static works
> configure:19162: result: no
> configure:19174: checking if mpif77 supports -c -o file.o
> configure:19195: mpif77 -c -g -O2 -o out/conftest2.o conftest.f >&5
> configure:19199: $? = 0
> configure:19221: result: yes
> configure:19226: checking if mpif77 supports -c -o file.o
> configure:19273: result: yes
> configure:19303: checking whether the mpif77 linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
> configure:20357: result: yes
> configure:20494: checking dynamic linker characteristics
> configure:21115: result: darwin9.7.0 dyld
> configure:21166: checking how to hardcode library paths into programs
> configure:21191: result: immediate
> configure:21327: checking if libtool supports shared libraries
> configure:21329: result: yes
> configure:21332: checking whether to build shared libraries
> configure:21352: result: no
> configure:21355: checking whether to build static libraries
> configure:21359: result: yes
> configure:21385: mpif77 -c  -O2 -DNDEBUG  conftest.f >&5
> configure:21388: $? = 0
> configure:21498: checking for mpif77 option to produce PIC
> configure:21770: result: -fno-common
> configure:21779: checking if mpif77 PIC flag -fno-common works
> configure:21797: mpif77 -c  -O2 -DNDEBUG -fno-common  conftest.f >&5
> configure:21801: $? = 0
> configure:21814: result: yes
> configure:21835: checking if mpif77 static flag -static works
> configure:21863: result: no
> configure:21875: checking if mpif77 supports -c -o file.o
> configure:21896: mpif77 -c  -O2 -DNDEBUG -o out/conftest2.o  conftest.f >&5
> configure:21900: $? = 0
> configure:21922: result: yes
> configure:21927: checking if mpif77 supports -c -o file.o
> configure:21974: result: yes
> configure:22004: checking whether the mpif77 linker 
> (/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld) supports shared libraries
> configure:23058: result: yes
> configure:23195: checking dynamic linker characteristics
> configure:23816: result: darwin9.7.0 dyld
> configure:23867: checking how to hardcode library paths into programs
> configure:23892: result: immediate
> configure:23942: checking for gunzip
> configure:23958: found /usr/bin/gunzip
> configure:23969: result: gunzip -c
> configure:23979: checking for gzip
> configure:24006: result: gunzip -c
> configure:24016: checking for zcat
> configure:24043: result: gunzip -c
> configure:24066: checking if C++ compiler supports template class 
> specialization
> configure:24100: mpicxx -c -g -O0 -Wall -pipe  conftest.cpp >&5
> configure:24107: $? = 0
> configure:24128: result: yes
> configure:24138: checking if C++ compiler supports template function 
> specialization
> configure:24173: mpicxx -c -g -O0 -Wall -pipe  conftest.cpp >&5
> configure:24180: $? = 0
> configure:24201: result: yes
> configure:25142: checking for inttypes.h
> configure:25147: result: yes
> configure:25278: checking for stdint.h
> configure:25283: result: yes
> configure:25414: checking for sys/types.h
> configure:25419: result: yes
> configure:25559: checking stddef.h usability
> configure:25576: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:25583: $? = 0
> configure:25597: result: yes
> configure:25601: checking stddef.h presence
> configure:25616: mpicc -E  conftest.c
> configure:25623: $? = 0
> configure:25637: result: yes
> configure:25665: checking for stddef.h
> configure:25672: result: yes
> configure:25686: checking for stdlib.h
> configure:25691: result: yes
> configure:26078: checking for size_t
> configure:26114: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:26121: $? = 0
> configure:26156: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> conftest.c: In function 'main':
> conftest.c:75: error: syntax error before ')' token
> conftest.c:79: warning: control reaches end of non-void function
> configure:26163: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | /* end confdefs.h.  */
> | #include <stdio.h>
> | #ifdef HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #ifdef HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #ifdef STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # ifdef HAVE_STDLIB_H
> | #  include <stdlib.h>
> | # endif
> | #endif
> | #ifdef HAVE_STRING_H
> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> | #  include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #ifdef HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #ifdef HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #endif
> | #ifdef HAVE_STDINT_H
> | # include <stdint.h>
> | #endif
> | #ifdef HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | if (sizeof ((size_t)))
> |       return 0;
> |   ;
> |   return 0;
> | }
> configure:26186: result: yes
> configure:26200: checking for ptrdiff_t
> configure:26236: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> configure:26243: $? = 0
> configure:26278: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> conftest.c: In function 'main':
> conftest.c:76: error: syntax error before ')' token
> conftest.c:80: warning: control reaches end of non-void function
> configure:26285: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | /* end confdefs.h.  */
> | #include <stdio.h>
> | #ifdef HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #ifdef HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #ifdef STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # ifdef HAVE_STDLIB_H
> | #  include <stdlib.h>
> | # endif
> | #endif
> | #ifdef HAVE_STRING_H
> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> | #  include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #ifdef HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #ifdef HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #endif
> | #ifdef HAVE_STDINT_H
> | # include <stdint.h>
> | #endif
> | #ifdef HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | if (sizeof ((ptrdiff_t)))
> |       return 0;
> |   ;
> |   return 0;
> | }
> configure:26308: result: yes
> configure:26337: checking ieeefp.h usability
> configure:26354: mpicc -c -g -O0 -Wall -pipe  conftest.c >&5
> conftest.c:66:20: error: ieeefp.h: No such file or directory
> configure:26361: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | /* end confdefs.h.  */
> | #include <stdio.h>
> | #ifdef HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #ifdef HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #ifdef STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # ifdef HAVE_STDLIB_H
> | #  include <stdlib.h>
> | # endif
> | #endif
> | #ifdef HAVE_STRING_H
> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> | #  include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #ifdef HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #ifdef HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #endif
> | #ifdef HAVE_STDINT_H
> | # include <stdint.h>
> | #endif
> | #ifdef HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | #include <ieeefp.h>
> configure:26375: result: no
> configure:26379: checking ieeefp.h presence
> configure:26394: mpicc -E  conftest.c
> conftest.c:33:20: error: ieeefp.h: No such file or directory
> configure:26401: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | /* end confdefs.h.  */
> | #include <ieeefp.h>
> configure:26415: result: no
> configure:26443: checking for ieeefp.h
> configure:26450: result: no
> configure:26600: checking for C++ unordered_map
> configure:26641: mpicxx -c -g -O0 -Wall -pipe  conftest.cpp >&5
> conftest.cpp:33:25: error: unordered_map: No such file or directory
> conftest.cpp: In function 'int main()':
> conftest.cpp:45: error: 'unordered_map' is not a member of 'std'
> conftest.cpp:45: error: expected primary-expression before 'int'
> conftest.cpp:45: error: expected `;' before 'int'
> configure:26648: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | /* end confdefs.h.  */
> | #include <unordered_map>
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | std::unordered_map<int,int> map
> |   ;
> |   return 0;
> | }
> configure:26692: mpicxx -c -g -O0 -Wall -pipe  conftest.cpp >&5
> configure:26699: $? = 0
> configure:26773: result: std::tr1
> configure:26803: checking mpi.h usability
> configure:26820: mpicc -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.c >&5
> configure:26827: $? = 0
> configure:26841: result: yes
> configure:26845: checking mpi.h presence
> configure:26860: mpicc -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.c
> configure:26867: $? = 0
> configure:26881: result: yes
> configure:26909: checking for mpi.h
> configure:26916: result: yes
> configure:26929: checking If -DMPICH_IGNORE_CXX_SEEK is necessary
> configure:26968: mpicxx -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
> configure:26975: $? = 0
> configure:26980: result: no
> configure:27102: checking for mpiexec
> configure:27118: found 
> /Users/likask/MyBuild/openmpi-1.3.2_darwin/bin/mpiexec
> configure:27129: result: mpiexec
> configure:27174: checking for python
> configure:27190: found 
> /Library/Frameworks/Python.framework/Versions/Current/bin/python
> configure:27201: result: python
> configure:27211: checking if python works
> configure:27216: result: yes
> configure:27238: checking for location of python headers
> configure:27244: result: 
> /Library/Frameworks/Python.framework/Versions/4.3.0/include/python2.5
> configure:27276: checking pyconfig.h usability
> configure:27293: mpicc -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> -IPYCONFIG_DIR 
> -I/Library/Frameworks/Python.framework/Versions/4.3.0/include/python2.5 
> conftest.c >&5
> configure:27300: $? = 0
> configure:27314: result: yes
> configure:27318: checking pyconfig.h presence
> configure:27333: mpicc -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -IPYCONFIG_DIR 
> -I/Library/Frameworks/Python.framework/Versions/4.3.0/include/python2.5 
> conftest.c
> configure:27340: $? = 0
> configure:27354: result: yes
> configure:27382: checking for pyconfig.h
> configure:27389: result: yes
> configure:27411: checking Python.h usability
> configure:27428: mpicc -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> -IPYCONFIG_DIR 
> -I/Library/Frameworks/Python.framework/Versions/4.3.0/include/python2.5 
> conftest.c >&5
> configure:27435: $? = 0
> configure:27449: result: yes
> configure:27453: checking Python.h presence
> configure:27468: mpicc -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map -IPYCONFIG_DIR 
> -I/Library/Frameworks/Python.framework/Versions/4.3.0/include/python2.5 
> conftest.c
> configure:27475: $? = 0
> configure:27489: result: yes
> configure:27517: checking for Python.h
> configure:27524: result: yes
> configure:27540: checking for NumPy module
> configure:27545: result: yes
> configure:27562: checking for location of NumPy includes
> configure:27570: result: 
> /Library/Frameworks/Python.framework/Versions/4.3.0/lib/python2.5/site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/numpy/core/include 
> 
> configure:27578: checking for numpy/arrayobject.h
> configure:27599: mpicc -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> -I/Library/Frameworks/Python.framework/Versions/4.3.0/lib/python2.5/site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/numpy/core/include 
> -IPYCONFIG_DIR 
> -I/Library/Frameworks/Python.framework/Versions/4.3.0/include/python2.5 
> conftest.c >&5
> /Library/Frameworks/Python.framework/Versions/4.3.0/lib/python2.5/site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/numpy/core/include/numpy/__multiarray_api.h:969: 
> warning: '_import_array' defined but not used
> configure:27606: $? = 0
> configure:27621: result: yes
> configure:27681: checking if Python support is to be built
> configure:27683: result: no
> configure:27727: checking for deflate in -lz
> configure:27770: mpicc -o conftest -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map   
> conftest.c -lz  -lm >&5
> configure:27777: $? = 0
> configure:27798: result: yes
> configure:27838: checking for SZ_Decompress in -lsz
> configure:27881: mpicc -o conftest -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map   
> conftest.c -lsz  -lm >&5
> ld: library not found for -lsz
> collect2: ld returned 1 exit status
> configure:27888: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | /* end confdefs.h.  */
> |
> | /* Override any GCC internal prototype to avoid an error.
> |    Use char because int might match the return type of a GCC
> |    builtin and then its argument prototype would still apply.  */
> | #ifdef __cplusplus
> | extern "C"
> | #endif
> | char SZ_Decompress ();
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | return SZ_Decompress ();
> |   ;
> |   return 0;
> | }
> configure:27909: result: no
> configure:27951: checking if HDF5 support is enabled
> configure:27967: result: yes
> configure:27977: checking for gpfs_stat in -lgpfs
> configure:28020: mpicc -o conftest -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map  
> conftest.c -lgpfs  -lm >&5
> ld: library not found for -lgpfs
> collect2: ld returned 1 exit status
> configure:28027: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | /* end confdefs.h.  */
> |
> | /* Override any GCC internal prototype to avoid an error.
> |    Use char because int might match the return type of a GCC
> |    builtin and then its argument prototype would still apply.  */
> | #ifdef __cplusplus
> | extern "C"
> | #endif
> | char gpfs_stat ();
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | return gpfs_stat ();
> |   ;
> |   return 0;
> | }
> configure:28048: result: no
> configure:28108: checking hdf5.h usability
> configure:28125: mpicc -c -g -O0 -Wall -pipe  
> -I/Users/likask/MyBuild/hdf5-1.8.3_darwin/include -isystem 
> /Users/likask/MyBuild/hdf5-1.8.3_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.c >&5
> configure:28132: $? = 0
> configure:28146: result: yes
> configure:28150: checking hdf5.h presence
> configure:28165: mpicc -E  
> -I/Users/likask/MyBuild/hdf5-1.8.3_darwin/include -isystem 
> /Users/likask/MyBuild/hdf5-1.8.3_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.c
> configure:28172: $? = 0
> configure:28186: result: yes
> configure:28214: checking for hdf5.h
> configure:28223: result: yes
> configure:28243: checking for H5Fopen in -lhdf5
> configure:28286: mpicc -o conftest -g -O0 -Wall -pipe  
> -I/Users/likask/MyBuild/hdf5-1.8.3_darwin/include -isystem 
> /Users/likask/MyBuild/hdf5-1.8.3_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map   
> -L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib  conftest.c -lhdf5   -lm >&5
> Undefined symbols:
>   "_inflateEnd", referenced from:
>       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>   "_inflateInit_", referenced from:
>       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>   "_compress2", referenced from:
>       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
>   "_inflate", referenced from:
>       _H5Z_filter_deflate in libhdf5.a(H5Zdeflate.o)
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> configure:28293: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | #define HAVE_HDF5_H 1
> | /* end confdefs.h.  */
> |
> | /* Override any GCC internal prototype to avoid an error.
> |    Use char because int might match the return type of a GCC
> |    builtin and then its argument prototype would still apply.  */
> | #ifdef __cplusplus
> | extern "C"
> | #endif
> | char H5Fopen ();
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | return H5Fopen ();
> |   ;
> |   return 0;
> | }
> configure:28316: result: no
> configure:28329: checking for H5Fopen in -lhdf5
> configure:28372: mpicc -o conftest -g -O0 -Wall -pipe  
> -I/Users/likask/MyBuild/hdf5-1.8.3_darwin/include -isystem 
> /Users/likask/MyBuild/hdf5-1.8.3_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map   
> -L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib  conftest.c -lhdf5 -lz   
> -lm >&5
> configure:28379: $? = 0
> configure:28402: result: yes
> configure:28640: checking for H5Pset_fapl_mpio in -lhdf5
> configure:28684: mpicc -o conftest -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map    
> -L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib conftest.c -lhdf5  -lz -lhdf5
>        -lm >&5
> configure:28691: $? = 0
> configure:28712: result: yes
> configure:28742: checking if NetCDF support is enabled
> configure:28759: result: yes
> configure:28786: checking strstream.h usability
> configure:28803: mpicxx -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.cpp >&5
> conftest.cpp:67:23: error: strstream.h: No such file or directory
> configure:28810: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | #define HAVE_HDF5_H 1
> | /* end confdefs.h.  */
> | #include <stdio.h>
> | #ifdef HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #ifdef HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #ifdef STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # ifdef HAVE_STDLIB_H
> | #  include <stdlib.h>
> | # endif
> | #endif
> | #ifdef HAVE_STRING_H
> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> | #  include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #ifdef HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #ifdef HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #endif
> | #ifdef HAVE_STDINT_H
> | # include <stdint.h>
> | #endif
> | #ifdef HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | #include <strstream.h>
> configure:28824: result: no
> configure:28828: checking strstream.h presence
> configure:28843: mpicxx -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
> conftest.cpp:34:23: error: strstream.h: No such file or directory
> configure:28850: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | #define HAVE_HDF5_H 1
> | /* end confdefs.h.  */
> | #include <strstream.h>
> configure:28864: result: no
> configure:28892: checking for strstream.h
> configure:28899: result: no
> configure:28917: checking sstream.h usability
> configure:28934: mpicxx -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.cpp >&5
> conftest.cpp:67:21: error: sstream.h: No such file or directory
> configure:28941: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | #define HAVE_HDF5_H 1
> | /* end confdefs.h.  */
> | #include <stdio.h>
> | #ifdef HAVE_SYS_TYPES_H
> | # include <sys/types.h>
> | #endif
> | #ifdef HAVE_SYS_STAT_H
> | # include <sys/stat.h>
> | #endif
> | #ifdef STDC_HEADERS
> | # include <stdlib.h>
> | # include <stddef.h>
> | #else
> | # ifdef HAVE_STDLIB_H
> | #  include <stdlib.h>
> | # endif
> | #endif
> | #ifdef HAVE_STRING_H
> | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
> | #  include <memory.h>
> | # endif
> | # include <string.h>
> | #endif
> | #ifdef HAVE_STRINGS_H
> | # include <strings.h>
> | #endif
> | #ifdef HAVE_INTTYPES_H
> | # include <inttypes.h>
> | #endif
> | #ifdef HAVE_STDINT_H
> | # include <stdint.h>
> | #endif
> | #ifdef HAVE_UNISTD_H
> | # include <unistd.h>
> | #endif
> | #include <sstream.h>
> configure:28955: result: no
> configure:28959: checking sstream.h presence
> configure:28974: mpicxx -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
> conftest.cpp:34:21: error: sstream.h: No such file or directory
> configure:28981: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | #define HAVE_HDF5_H 1
> | /* end confdefs.h.  */
> | #include <sstream.h>
> configure:28995: result: no
> configure:29023: checking for sstream.h
> configure:29030: result: no
> configure:29048: checking strstream usability
> configure:29065: mpicxx -c -g -O0 -Wall -pipe  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.cpp >&5
> In file included from /usr/include/c++/4.0.0/backward/strstream:51,
>                  from conftest.cpp:67:
> /usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning: 
> #warning This file includes at least one deprecated or antiquated 
> header. Please consider using one of the 32 headers found in section 
> 17.4.1.2 of the C++ standard. Examples include substituting the <X> 
> header for the <X.h> header for C++ includes, or <iostream> instead of 
> the deprecated header <iostream.h>. To disable this warning use 
> -Wno-deprecated.
> configure:29072: $? = 0
> configure:29086: result: yes
> configure:29090: checking strstream presence
> configure:29105: mpicxx -E  -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map conftest.cpp
> In file included from /usr/include/c++/4.0.0/backward/strstream:51,
>                  from conftest.cpp:34:
> /usr/include/c++/4.0.0/backward/backward_warning.h:32:2: warning: 
> #warning This file includes at least one deprecated or antiquated 
> header. Please consider using one of the 32 headers found in section 
> 17.4.1.2 of the C++ standard. Examples include substituting the <X> 
> header for the <X.h> header for C++ includes, or <iostream> instead of 
> the deprecated header <iostream.h>. To disable this warning use 
> -Wno-deprecated.
> configure:29112: $? = 0
> configure:29126: result: yes
> configure:29154: checking for strstream
> configure:29161: result: yes
> configure:29360: checking netcdf.h usability
> configure:29377: mpicc -c -g -O0 -Wall -pipe 
> -I/Users/likask/MyBuild/netcdf-4.0.1_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.c >&5
> configure:29384: $? = 0
> configure:29398: result: yes
> configure:29402: checking netcdf.h presence
> configure:29417: mpicc -E 
> -I/Users/likask/MyBuild/netcdf-4.0.1_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.c
> configure:29424: $? = 0
> configure:29438: result: yes
> configure:29466: checking for netcdf.h
> configure:29475: result: yes
> configure:29493: checking for netcdf.hh
> configure:29532: mpicxx -c -g -O0 -Wall -pipe 
> -I/Users/likask/MyBuild/netcdf-4.0.1_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> conftest.cpp >&5
> configure:29539: $? = 0
> configure:29604: result: yes
> configure:29615: checking for netcdf_c++ library
> configure:29648: mpicxx -o conftest -g -O0 -Wall -pipe 
> -I/Users/likask/MyBuild/netcdf-4.0.1_darwin/include  
> -DUNORDERED_MAP_NS=std::tr1 -DHAVE_UNORDERED_MAP=tr1/unordered_map 
> -L/Users/likask/MyBuild/netcdf-4.0.1_darwin/lib  conftest.cpp -lm 
> -lnetcdf_c++ -lnetcdf >&5
> Undefined symbols:
>   "_H5Gget_objinfo", referenced from:
>       _dimscale_visitor in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_match_dimscales in libnetcdf.a(nc4hdf.o)
>   "_H5Lget_name_by_idx", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I8LE_g", referenced from:
>       _H5T_STD_I8LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I32BE_g", referenced from:
>       _H5T_STD_I32BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Pcreate", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pget_nfilters", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pclose", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Awrite", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Gmove2", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Dread", referenced from:
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>   "_H5T_IEEE_F32LE_g", referenced from:
>       _H5T_IEEE_F32LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U16LE_g", referenced from:
>       _H5T_STD_U16LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5P_CLS_GROUP_CREATE_g", referenced from:
>       _H5P_CLS_GROUP_CREATE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Sclose", referenced from:
>       _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tclose", referenced from:
>       _type_list_del in libnetcdf.a(nc4internal.o)
>       _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>       _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _nc4_free_global_hdf_string_typeid in libnetcdf.a(nc4hdf.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_array_dims1", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tvlen_create", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Dwrite", referenced from:
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>   "_H5Tset_size", referenced from:
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>   "_H5T_IEEE_F64BE_g", referenced from:
>       _H5T_IEEE_F64BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Pget_filter2", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Gunlink", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Sget_simple_extent_type", referenced from:
>       _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_INT_g", referenced from:
>       _H5T_NATIVE_INT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_fletcher32", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Sselect_hyperslab", referenced from:
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_ULLONG_g", referenced from:
>       _H5T_NATIVE_ULLONG_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Aget_space", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U8LE_g", referenced from:
>       _H5T_STD_U8LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Tinsert", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_fclose_degree", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5Dget_space", referenced from:
>       _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I16LE_g", referenced from:
>       _H5T_STD_I16LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Aopen_name", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_class", referenced from:
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Screate", referenced from:
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5close", referenced from:
>       _nc_close in libnetcdf.a(nc4file.o)
>   "_H5Fcreate", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>   "_H5Pset_chunk", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_C_S1_g", referenced from:
>       _H5T_C_S1_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_fill_value", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_link_creation_order", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tcreate", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U32LE_g", referenced from:
>       _H5T_STD_U32LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Aget_type", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_member_type", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5P_CLS_FILE_ACCESS_g", referenced from:
>       _H5P_CLS_FILE_ACCESS_g$non_lazy_ptr in libnetcdf.a(nc4file.o)
>   "_H5T_NATIVE_SCHAR_g", referenced from:
>       _H5T_NATIVE_SCHAR_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Sget_simple_extent_dims", referenced from:
>       _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U64BE_g", referenced from:
>       _H5T_STD_U64BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5P_CLS_FILE_CREATE_g", referenced from:
>       _H5P_CLS_FILE_CREATE_g$non_lazy_ptr in libnetcdf.a(nc4file.o)
>   "_H5Dopen1", referenced from:
>       _nc4_open_var_grp in libnetcdf.a(nc4hdf.o)
>       _nc4_open_var_grp2 in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Gopen2", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I32LE_g", referenced from:
>       _H5T_STD_I32LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5DSdetach_scale", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5DSattach_scale", referenced from:
>       _rec_reattach_scales in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pget_layout", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_dxpl_mpio", referenced from:
>       _set_par_access in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_native_type", referenced from:
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_DOUBLE_g", referenced from:
>       _H5T_NATIVE_DOUBLE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I64BE_g", referenced from:
>       _H5T_STD_I64BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Fopen", referenced from:
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5Pset_attr_creation_order", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Aread", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_layout", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Acreate1", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tenum_insert", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_UCHAR_g", referenced from:
>       _H5T_NATIVE_UCHAR_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Tarray_create1", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Gget_num_objs", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5check_version", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5open", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_IEEE_F64LE_g", referenced from:
>       _H5T_IEEE_F64LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_SHORT_g", referenced from:
>       _H5T_NATIVE_SHORT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Fflush", referenced from:
>       _sync_netcdf4_file in libnetcdf.a(nc4file.o)
>   "_H5Aget_num_attrs", referenced from:
>       _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_fapl_mpio", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5Adelete", referenced from:
>       _nc_del_att in libnetcdf.a(nc4attr.o)
>       _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>   "_H5Tcommit1", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I8BE_g", referenced from:
>       _H5T_STD_I8BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Topen2", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Gmove", referenced from:
>       _nc_rename_var in libnetcdf.a(nc4var.o)
>   "_H5Pset_shuffle", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Dcreate1", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_deflate", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_fapl_mpiposix", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5Tenum_create", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Sget_simple_extent_npoints", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_member_value", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Sget_simple_extent_ndims", referenced from:
>       _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5DSget_scale_name", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Eset_auto1", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5Tget_size", referenced from:
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5DSiterate_scales", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5DSget_num_scales", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_member_offset", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_IEEE_F32BE_g", referenced from:
>       _H5T_IEEE_F32BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U16BE_g", referenced from:
>       _H5T_STD_U16BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_nmembers", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5P_CLS_DATASET_CREATE_g", referenced from:
>       _H5P_CLS_DATASET_CREATE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Gcreate2", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tequal", referenced from:
>       _nc4_rec_find_hdf_type in libnetcdf.a(nc4internal.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>   "_H5DSis_scale", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U64LE_g", referenced from:
>       _H5T_STD_U64LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U8BE_g", referenced from:
>       _H5T_STD_U8BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I16BE_g", referenced from:
>       _H5T_STD_I16BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_UINT_g", referenced from:
>       _H5T_NATIVE_UINT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Pget_fill_value", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tis_variable_str", referenced from:
>       _get_netcdf_type in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_cache", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5T_NATIVE_LLONG_g", referenced from:
>       _H5T_NATIVE_LLONG_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Aclose", referenced from:
>       _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pset_libver_bounds", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>   "_H5Tcopy", referenced from:
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>   "_H5Pget_chunk", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_I64LE_g", referenced from:
>       _H5T_STD_I64LE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Dclose", referenced from:
>       _nc_rename_att in libnetcdf.a(nc4attr.o)
>       _nc_del_att in libnetcdf.a(nc4attr.o)
>       _nc4_find_dim_len in libnetcdf.a(nc4internal.o)
>       _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>       _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>       _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Aget_name", referenced from:
>       _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tset_strpad", referenced from:
>       _get_hdf_typeid in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>   "_H5Dget_create_plist", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Oget_info_by_idx", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Pfill_value_defined", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_order", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Fclose", referenced from:
>       _nc_create_file in libnetcdf.a(nc4file.o)
>       _nc_open_file in libnetcdf.a(nc4file.o)
>       _close_netcdf4_file in libnetcdf.a(nc4file.o)
>   "_H5Tget_member_name", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_STD_U32BE_g", referenced from:
>       _H5T_STD_U32BE_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_USHORT_g", referenced from:
>       _H5T_NATIVE_USHORT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5P_CLS_DATASET_XFER_g", referenced from:
>       _H5P_CLS_DATASET_XFER_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Gclose", referenced from:
>       _nc4_rec_grp_del in libnetcdf.a(nc4internal.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Dget_type", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_super", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Tget_array_ndims", referenced from:
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Screate_simple", referenced from:
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_get_vara in libnetcdf.a(nc4hdf.o)
>       _pg_att_grpa in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5T_NATIVE_FLOAT_g", referenced from:
>       _H5T_NATIVE_FLOAT_g$non_lazy_ptr in libnetcdf.a(nc4hdf.o)
>   "_H5Aopen_idx", referenced from:
>       _nc4_delete_hdf5_att in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_read_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5DSset_scale", referenced from:
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
>   "_H5Dextend", referenced from:
>       _nc4_put_vara in libnetcdf.a(nc4hdf.o)
>       _nc4_rec_write_metadata in libnetcdf.a(nc4hdf.o)
> ld: symbol(s) not found
> collect2: ld returned 1 exit status
> configure:29655: $? = 1
> configure: failed program was:
> | /* confdefs.h.  */
> | #define PACKAGE_NAME "MOAB"
> | #define PACKAGE_TARNAME "moab"
> | #define PACKAGE_VERSION "3.99"
> | #define PACKAGE_STRING "MOAB 3.99"
> | #define PACKAGE_BUGREPORT ""
> | #define PACKAGE "moab"
> | #define VERSION "3.99"
> | #define STDC_HEADERS 1
> | #define HAVE_SYS_TYPES_H 1
> | #define HAVE_SYS_STAT_H 1
> | #define HAVE_STDLIB_H 1
> | #define HAVE_STRING_H 1
> | #define HAVE_MEMORY_H 1
> | #define HAVE_STRINGS_H 1
> | #define HAVE_INTTYPES_H 1
> | #define HAVE_STDINT_H 1
> | #define HAVE_UNISTD_H 1
> | #define HAVE_DLFCN_H 1
> | #define LT_OBJDIR ".libs/"
> | #define MB_VERSION "3.99"
> | #define MB_VERSION_MAJOR 3
> | #define MB_VERSION_MINOR 99
> | #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> | #define MOAB_HAVE_INTTYPES_H /**/
> | #define MOAB_HAVE_STDINT_H /**/
> | #define MOAB_HAVE_SYS_TYPES_H /**/
> | #define MOAB_HAVE_STDDEF_H /**/
> | #define MOAB_HAVE_STDLIB_H /**/
> | #define MOAB_HAVE_SIZE_T /**/
> | #define MOAB_HAVE_PTRDIFF_T /**/
> | #define HAVE_HDF5_H 1
> | #define HAVE_NETCDF_H 1
> | /* end confdefs.h.  */
> | #include <netcdf.hh>
> | #ifdef FC_DUMMY_MAIN
> | #ifndef FC_DUMMY_MAIN_EQ_F77
> | #  ifdef __cplusplus
> |      extern "C"
> | #  endif
> |    int FC_DUMMY_MAIN() { return 1; }
> | #endif
> | #endif
> | int
> | main ()
> | {
> | NcFile ncf("foo",NcFile::ReadOnly);
> |   ;
> |   return 0;
> | }
> configure:29669: result: no
> configure:29671: WARNING: NetCDF C++ API not found
> configure:29690: error: "NetCDF not found or not working"
> 
> ## ---------------- ##
> ## Cache variables. ##
> ## ---------------- ##
> 
> ac_cv_build=i386-apple-darwin9.7.0
> ac_cv_c_compiler_gnu=yes
> ac_cv_cxx_compiler_gnu=yes
> ac_cv_env_CCC_set=
> ac_cv_env_CCC_value=
> ac_cv_env_CC_set=set
> ac_cv_env_CC_value=mpicc
> ac_cv_env_CFLAGS_set=set
> ac_cv_env_CFLAGS_value='-g -O0'
> ac_cv_env_CPPFLAGS_set=
> ac_cv_env_CPPFLAGS_value=
> ac_cv_env_CPP_set=
> ac_cv_env_CPP_value=
> ac_cv_env_CXXCPP_set=
> ac_cv_env_CXXCPP_value=
> ac_cv_env_CXXFLAGS_set=set
> ac_cv_env_CXXFLAGS_value='-g -O0'
> ac_cv_env_CXX_set=set
> ac_cv_env_CXX_value=mpicxx
> ac_cv_env_F77_set=set
> ac_cv_env_F77_value=mpif77
> ac_cv_env_FCFLAGS_set=
> ac_cv_env_FCFLAGS_value=
> ac_cv_env_FC_set=set
> ac_cv_env_FC_value=mpif77
> ac_cv_env_FFLAGS_set=
> ac_cv_env_FFLAGS_value=
> ac_cv_env_LDFLAGS_set=
> ac_cv_env_LDFLAGS_value=
> ac_cv_env_LIBS_set=
> ac_cv_env_LIBS_value=
> ac_cv_env_MPIEXEC_NP_set=
> ac_cv_env_MPIEXEC_NP_value=
> ac_cv_env_MPIEXEC_set=
> ac_cv_env_MPIEXEC_value=
> ac_cv_env_NP_set=
> ac_cv_env_NP_value=
> ac_cv_env_PYTHON_set=
> ac_cv_env_PYTHON_value=
> ac_cv_env_QTDIR_set=
> ac_cv_env_QTDIR_value=
> ac_cv_env_XMKMF_set=
> ac_cv_env_XMKMF_value=
> ac_cv_env_build_alias_set=
> ac_cv_env_build_alias_value=
> ac_cv_env_host_alias_set=
> ac_cv_env_host_alias_value=
> ac_cv_env_target_alias_set=
> ac_cv_env_target_alias_value=
> ac_cv_f77_compiler_gnu=yes
> ac_cv_fc_compiler_gnu=yes
> ac_cv_header_Python_h=yes
> ac_cv_header_dlfcn_h=yes
> ac_cv_header_hdf5_h=yes
> ac_cv_header_ieeefp_h=no
> ac_cv_header_inttypes_h=yes
> ac_cv_header_memory_h=yes
> ac_cv_header_mpi_h=yes
> ac_cv_header_netcdf_h=yes
> ac_cv_header_numpy_arrayobject_h=yes
> ac_cv_header_pyconfig_h=yes
> ac_cv_header_sstream_h=no
> ac_cv_header_stdc=yes
> ac_cv_header_stddef_h=yes
> ac_cv_header_stdint_h=yes
> ac_cv_header_stdlib_h=yes
> ac_cv_header_string_h=yes
> ac_cv_header_strings_h=yes
> ac_cv_header_strstream=yes
> ac_cv_header_strstream_h=no
> ac_cv_header_sys_stat_h=yes
> ac_cv_header_sys_types_h=yes
> ac_cv_header_unistd_h=yes
> ac_cv_host=i386-apple-darwin9.7.0
> ac_cv_lib_gpfs_gpfs_stat=no
> ac_cv_lib_hdf5_H5Pset_fapl_mpio=yes
> ac_cv_lib_hdf5___H5Fopen=yes
> ac_cv_lib_sz_SZ_Decompress=no
> ac_cv_lib_z_deflate=yes
> ac_cv_objext=o
> ac_cv_path_EGREP='/usr/bin/grep -E'
> ac_cv_path_FGREP='/usr/bin/grep -F'
> ac_cv_path_GREP=/usr/bin/grep
> ac_cv_path_SED=sed
> ac_cv_path_install='/opt/local/bin/ginstall -c'
> ac_cv_path_mkdir=/opt/local/bin/gmkdir
> ac_cv_prog_AWK=gawk
> ac_cv_prog_CPP='mpicc -E'
> ac_cv_prog_CXXCPP='mpicxx -E'
> ac_cv_prog_MPIEXEC=mpiexec
> ac_cv_prog_PYTHON=python
> ac_cv_prog_SED=sed
> ac_cv_prog_ZCAT='gunzip -c'
> ac_cv_prog_ac_ct_AR=ar
> ac_cv_prog_ac_ct_DSYMUTIL=dsymutil
> ac_cv_prog_ac_ct_LIPO=lipo
> ac_cv_prog_ac_ct_NMEDIT=nmedit
> ac_cv_prog_ac_ct_OTOOL=otool
> ac_cv_prog_ac_ct_RANLIB=ranlib
> ac_cv_prog_ac_ct_STRIP=strip
> ac_cv_prog_cc_c89=
> ac_cv_prog_cc_g=yes
> ac_cv_prog_cxx_g=yes
> ac_cv_prog_f77_g=yes
> ac_cv_prog_fc_g=yes
> ac_cv_prog_make_make_set=yes
> ac_cv_target=i386-apple-darwin9.7.0
> ac_cv_type_ptrdiff_t=yes
> ac_cv_type_size_t=yes
> am_cv_CC_dependencies_compiler_type=gcc3
> am_cv_CXX_dependencies_compiler_type=gcc3
> lt_cv_apple_cc_single_mod=yes
> lt_cv_deplibs_check_method=pass_all
> lt_cv_file_magic_cmd='$MAGIC_CMD'
> lt_cv_file_magic_test_file=
> lt_cv_ld_exported_symbols_list=yes
> lt_cv_ld_reload_flag=-r
> lt_cv_nm_interface='BSD nm'
> lt_cv_objdir=.libs
> lt_cv_path_LD=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
> lt_cv_path_LDCXX=/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld
> lt_cv_path_NM='/usr/bin/nm -p'
> lt_cv_prog_compiler_c_o=yes
> lt_cv_prog_compiler_c_o_CXX=yes
> lt_cv_prog_compiler_c_o_F77=yes
> lt_cv_prog_compiler_c_o_FC=yes
> lt_cv_prog_compiler_pic_works=yes
> lt_cv_prog_compiler_pic_works_CXX=yes
> lt_cv_prog_compiler_pic_works_F77=yes
> lt_cv_prog_compiler_pic_works_FC=yes
> lt_cv_prog_compiler_rtti_exceptions=no
> lt_cv_prog_compiler_static_works=no
> lt_cv_prog_compiler_static_works_CXX=no
> lt_cv_prog_compiler_static_works_F77=no
> lt_cv_prog_compiler_static_works_FC=no
> lt_cv_prog_gnu_ld=no
> lt_cv_prog_gnu_ldcxx=no
> lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[     
> ]\([BCDEGRST][BCDEGRST]*\)[     ][     ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 
> _\2 \2/p'\'''
> lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) 
> $/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ 
> ]*\)$/  {"\2", (void *) \&\2},/p'\'''
> lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: 
> \([^ ]*\) $/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ 
> ]*\) \(lib[^ ]*\)$/  {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* 
> \([^ ]*\) \([^ ]*\)$/  {"lib\2", (void *) \&\2},/p'\'''
> lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern 
> int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\'''
> lt_cv_sys_max_cmd_len=196608
> mk_cv_cxx_unordered_map=std::tr1
> snl_cv_template_func_specialization=yes
> snl_cv_template_specialization=yes
> 
> ## ----------------- ##
> ## Output variables. ##
> ## ----------------- ##
> 
> ACLOCAL='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing --run 
> aclocal-1.10'
> AMDEPBACKSLASH='\'
> AMDEP_FALSE='#'
> AMDEP_TRUE=''
> AMTAR='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing --run tar'
> AM_CFLAGS=''
> AM_CPPFLAGS=' -I/Users/likask/MyBuild/hdf5-1.8.3_darwin/include -isystem 
> /Users/likask/MyBuild/hdf5-1.8.3_darwin/include '
> AM_CXXFLAGS=''
> AM_LDFLAGS=''
> AR='ar'
> AUTOCONF='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing 
> --run autoconf'
> AUTOHEADER='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing 
> --run autoheader'
> AUTOMAKE='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing 
> --run automake-1.10'
> AWK='gawk'
> BABEL_DIR=''
> CC='mpicc'
> CCDEPMODE='depmode=gcc3'
> CFLAGS='-g -O0 -Wall -pipe'
> CGM_CPPFLAGS=''
> CGM_LDFLAGS=''
> CGM_LIBS=''
> CGM_LTFLAGS=''
> CHACO_INCLUDES=''
> CHACO_LIBS=''
> CPP='mpicc -E'
> CPPFLAGS=' -DUNORDERED_MAP_NS=std::tr1 
> -DHAVE_UNORDERED_MAP=tr1/unordered_map'
> CXX='mpicxx'
> CXXCPP='mpicxx -E'
> CXXDEPMODE='depmode=gcc3'
> CXXFLAGS='-g -O0 -Wall -pipe'
> CYGPATH_W='echo'
> DEFINES=' -DTEMPLATE_SPECIALIZATION -DTEMPLATE_FUNC_SPECIALIZATION 
> -DUSE_MPI -DHDF5_FILE -DHDF5_PARALLEL'
> DEFS=''
> DEPDIR='.deps'
> DISTCHECK_CONFIGURE_FLAGS=' --enable-imesh="nofortran" 
> --with-hdf5="/Users/likask/MyBuild/hdf5-1.8.3_darwin" 
> --with-netcdf="/Users/likask/MyBuild/netcdf-4.0.1_darwin"'
> DOXYGEN=''
> DSYMUTIL='dsymutil'
> DUMPBIN=''
> ECHO_C='\c'
> ECHO_N=''
> ECHO_T=''
> EGREP='/usr/bin/grep -E'
> ENABLE_DOXYGEN_FALSE=''
> ENABLE_DOXYGEN_TRUE=''
> ENABLE_dagmc_FALSE=''
> ENABLE_dagmc_TRUE=''
> ENABLE_gsets_FALSE=''
> ENABLE_gsets_TRUE=''
> ENABLE_hexmodops_FALSE=''
> ENABLE_hexmodops_TRUE=''
> ENABLE_imesh_FALSE='#'
> ENABLE_imesh_TRUE=''
> ENABLE_mbchaco_FALSE=''
> ENABLE_mbchaco_TRUE=''
> ENABLE_mbconvert_FALSE=''
> ENABLE_mbconvert_TRUE=''
> ENABLE_mbcoupler_FALSE=''
> ENABLE_mbcoupler_TRUE=''
> ENABLE_mbdepth_FALSE=''
> ENABLE_mbdepth_TRUE=''
> ENABLE_mbperf_FALSE=''
> ENABLE_mbperf_TRUE=''
> ENABLE_mbsize_FALSE=''
> ENABLE_mbsize_TRUE=''
> ENABLE_mbskin_FALSE=''
> ENABLE_mbskin_TRUE=''
> ENABLE_mbsurfplot_FALSE=''
> ENABLE_mbsurfplot_TRUE=''
> ENABLE_mbtagprop_FALSE=''
> ENABLE_mbtagprop_TRUE=''
> ENABLE_mbzoltan_FALSE=''
> ENABLE_mbzoltan_TRUE=''
> ENABLE_mcnpmit_FALSE=''
> ENABLE_mcnpmit_TRUE=''
> ENABLE_pytaps_FALSE=''
> ENABLE_pytaps_TRUE='#'
> ENABLE_qvdual_FALSE=''
> ENABLE_qvdual_TRUE=''
> ENABLE_spheredecomp_FALSE=''
> ENABLE_spheredecomp_TRUE=''
> EXEEXT=''
> EXPORT_LDFLAGS='   -L/Users/likask/MyBuild/hdf5-1.8.3_darwin/lib'
> EXPORT_LTFLAGS=''
> F77='mpif77'
> FC='mpif77'
> FCFLAGS=' -O2 -DNDEBUG'
> FCLIBS=''
> FFLAGS='-g -O2'
> FGREP='/usr/bin/grep -F'
> GREP='/usr/bin/grep'
> HAVE_CGM_FALSE=''
> HAVE_CGM_TRUE=''
> HAVE_ZCAT_FALSE=''
> HAVE_ZCAT_TRUE='#'
> HDF5_FILE_FALSE='#'
> HDF5_FILE_TRUE=''
> HDF5_LIBS=' -lz -lhdf5'
> INCLUDES=''
> INSTALL_DATA='${INSTALL} -m 644'
> INSTALL_PROGRAM='${INSTALL}'
> INSTALL_SCRIPT='${INSTALL}'
> INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
> LD='/usr/libexec/gcc/i686-apple-darwin9/4.0.1/ld'
> LDFLAGS=''
> LIBOBJS=''
> LIBS='-lm'
> LIBTOOL='$(SHELL) $(top_builddir)/libtool'
> LIPO='lipo'
> LN_S='ln -s'
> LTLIBOBJS=''
> MAKEINFO='${SHELL} /Users/likask/MyBuild/src/moab-svn/trunk/missing 
> --run makeinfo'
> MKDIR_P='/opt/local/bin/gmkdir -p'
> MOAB_CGM_DEFINES=''
> MOAB_CXX_LIBS=''
> MOAB_CXX_LINKFLAGS=''
> MOC=''
> MPIEXEC='mpiexec'
> MPIEXEC_NP='-np'
> NETCDF_FILE_FALSE=''
> NETCDF_FILE_TRUE=''
> NETCDF_LIBS=''
> NM='/usr/bin/nm -p'
> NMEDIT='nmedit'
> NP='2'
> NUMPY_DIR='/Library/Frameworks/Python.framework/Versions/4.3.0/lib/python2.5/site-packages/numpy-1.3.0n1-py2.5-macosx-10.3-fat.egg/numpy/core/include' 
> 
> OBJDUMP='false'
> OBJEXT='o'
> OTOOL64=':'
> OTOOL='otool'
> PACKAGE='moab'
> PACKAGE_BUGREPORT=''
> PACKAGE_NAME='MOAB'
> PACKAGE_STRING='MOAB 3.99'
> PACKAGE_TARNAME='moab'
> PACKAGE_VERSION='3.99'
> PARALLEL_FALSE='#'
> PARALLEL_HDF5_FALSE='#'
> PARALLEL_HDF5_TRUE=''
> PARALLEL_TRUE=''
> PATH_SEPARATOR=':'
> PYTHON='python'
> PYTHON_DIR='PYCONFIG_DIR'
> QTDIR=''
> QVDUAL_INCLUDES=''
> QVDUAL_LIBS=''
> RANLIB='ranlib'
> SED='sed'
> SET_MAKE=''
> SHELL='/bin/sh'
> STRIP='strip'
> UIC=''
> USE_BABEL=''
> USE_BABEL_FALSE=''
> USE_BABEL_TRUE=''
> USE_MPIEXEC_FALSE='#'
> USE_MPIEXEC_TRUE=''
> USE_MPI_FALSE='#'
> USE_MPI_TRUE=''
> VERSION='3.99'
> VTK_LIB_DIR=''
> XMKMF=''
> X_CFLAGS=''
> X_EXTRA_LIBS=''
> X_LIBS=''
> X_PRE_LIBS=''
> ZCAT='gunzip -c'
> ZOLTAN_INC_FLAGS=''
> ZOLTAN_LIBS=''
> ZOLTAN_LIB_FLAGS=''
> ac_ct_CC=''
> ac_ct_CXX=''
> ac_ct_DUMPBIN=''
> ac_ct_F77=''
> ac_ct_FC=''
> am__fastdepCC_FALSE='#'
> am__fastdepCC_TRUE=''
> am__fastdepCXX_FALSE='#'
> am__fastdepCXX_TRUE=''
> am__include='include'
> am__isrc=''
> am__leading_dot='.'
> am__quote=''
> am__tar='${AMTAR} chof - "$$tardir"'
> am__untar='${AMTAR} xf -'
> bindir='${exec_prefix}/bin'
> build='i386-apple-darwin9.7.0'
> build_alias=''
> build_cpu='i386'
> build_os='darwin9.7.0'
> build_vendor='apple'
> datadir='${datarootdir}'
> datarootdir='${prefix}/share'
> docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
> dvidir='${docdir}'
> exec_prefix='NONE'
> host='i386-apple-darwin9.7.0'
> host_alias=''
> host_cpu='i386'
> host_os='darwin9.7.0'
> host_vendor='apple'
> htmldir='${docdir}'
> includedir='${prefix}/include'
> infodir='${datarootdir}/info'
> install_sh='$(SHELL) /Users/likask/MyBuild/src/moab-svn/trunk/install-sh'
> libdir='${exec_prefix}/lib'
> libexecdir='${exec_prefix}/libexec'
> localedir='${datarootdir}/locale'
> localstatedir='${prefix}/var'
> lt_ECHO='/bin/echo'
> mandir='${datarootdir}/man'
> mkdir_p='/opt/local/bin/gmkdir -p'
> oldincludedir='/usr/include'
> pdfdir='${docdir}'
> prefix='/Users/likask/MyBuild/moab-svn_darwin'
> program_transform_name='s,x,x,'
> psdir='${docdir}'
> pylibdir='${exec_prefix}/lib/python2.5/site-packages'
> sbindir='${exec_prefix}/sbin'
> sharedstatedir='${prefix}/com'
> sysconfdir='${prefix}/etc'
> target='i386-apple-darwin9.7.0'
> target_alias=''
> target_cpu='i386'
> target_os='darwin9.7.0'
> target_vendor='apple'
> 
> ## ----------- ##
> ## confdefs.h. ##
> ## ----------- ##
> 
> #define PACKAGE_NAME "MOAB"
> #define PACKAGE_TARNAME "moab"
> #define PACKAGE_VERSION "3.99"
> #define PACKAGE_STRING "MOAB 3.99"
> #define PACKAGE_BUGREPORT ""
> #define PACKAGE "moab"
> #define VERSION "3.99"
> #define STDC_HEADERS 1
> #define HAVE_SYS_TYPES_H 1
> #define HAVE_SYS_STAT_H 1
> #define HAVE_STDLIB_H 1
> #define HAVE_STRING_H 1
> #define HAVE_MEMORY_H 1
> #define HAVE_STRINGS_H 1
> #define HAVE_INTTYPES_H 1
> #define HAVE_STDINT_H 1
> #define HAVE_UNISTD_H 1
> #define HAVE_DLFCN_H 1
> #define LT_OBJDIR ".libs/"
> #define MB_VERSION "3.99"
> #define MB_VERSION_MAJOR 3
> #define MB_VERSION_MINOR 99
> #define MB_VERSION_STRING "MOAB 3.99 (Alpha)"
> #define MOAB_HAVE_INTTYPES_H /**/
> #define MOAB_HAVE_STDINT_H /**/
> #define MOAB_HAVE_SYS_TYPES_H /**/
> #define MOAB_HAVE_STDDEF_H /**/
> #define MOAB_HAVE_STDLIB_H /**/
> #define MOAB_HAVE_SIZE_T /**/
> #define MOAB_HAVE_PTRDIFF_T /**/
> #define HAVE_HDF5_H 1
> #define HAVE_NETCDF_H 1
> 
> 
> 

-- 
================================================================
"You will keep in perfect peace him whose mind is
   steadfast, because he trusts in you."               Isaiah 26:3

              Tim Tautges            Argonne National Laboratory
          (tautges at mcs.anl.gov)      (telecommuting from UW-Madison)
          phone: (608) 263-8485      1500 Engineering Dr.
            fax: (608) 263-4499      Madison, WI 53706