[ExM Users] Suppressing string_join() output

[Timothy Stitt (TGAC)]

Thanks. That worked!

---

Timothy Stitt PhD / Head of Scientific Computing

The Genome Analysis Centre (TGAC)

http://www.tgac.ac.uk/


p: +44 1603 450378

e: timothy.stitt at tgac.ac.uk<mailto:timothy.stitt at tgac.ac.uk>

From: Justin M Wozniak <wozniak at mcs.anl.gov<mailto:wozniak at mcs.anl.gov>>
Date: Tuesday, 17 March 2015 15:17
To: Timothy Stitt <timothy.stitt at tgac.ac.uk<mailto:timothy.stitt at tgac.ac.uk>>, "exm-user at lists.mcs.anl.gov<mailto:exm-user at lists.mcs.anl.gov>" <exm-user at lists.mcs.anl.gov<mailto:exm-user at lists.mcs.anl.gov>>
Subject: Re: [ExM Users] Suppressing string_join() output


Sorry- those are not supposed to be there.  You can comment them out of the Turbine source:

lib/string.tcl:336:        puts "cont: $container"
lib/string.tcl:338:        puts "Keys: $sorted_keys cont: $container"

then just 'make install' and try again.

On 03/17/2015 10:07 AM, Timothy Stitt (TGAC) wrote:
Hi all,

I'm using the string_join() routine to concatenate the elements of a string array. For some reason I'm getting debug output (see example below) which I can't seem to suppress (even with TURBINE_LOG=0).

…
cont: 5 --model 2 chunk.3 6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4 ecoli.fa 7 --score 8 50
Keys: 0 1 2 3 4 5 6 7 8 9 10 cont: 5 --model 2 chunk.3 6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4 ecoli.fa 7 --score 8 50
…

Is there a quick fix to prevent this type of output being sent to stdout?

Thanks,

Tim.

---

Timothy Stitt PhD / Head of Scientific Computing

The Genome Analysis Centre (TGAC)

http://www.tgac.ac.uk/


p: +44 1603 450378

e: timothy.stitt at tgac.ac.uk<mailto:timothy.stitt at tgac.ac.uk>



_______________________________________________
ExM-user mailing list
ExM-user at lists.mcs.anl.gov<mailto:ExM-user at lists.mcs.anl.gov>https://lists.mcs.anl.gov/mailman/listinfo/exm-user



--
Justin M Wozniak
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mcs.anl.gov/pipermail/exm-user/attachments/20150317/1972178b/attachment-0001.html>