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<div>Thanks. That worked!</div>
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<p style="font-size: 12px; margin: 0px; font-family: Verdana;">---</p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;"><b>Timothy Stitt PhD</b> / Head of Scientific Computing</span></p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;">The Genome Analysis Centre (TGAC)</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(4, 46, 238);"><span style="text-decoration: underline; font-size: 10px;"><a href="http://www.tgac.ac.uk/">http://www.tgac.ac.uk/</a></span></p>
<p style="margin: 0px; font-family: Cambria; min-height: 19px;"><span style="font-size: 10px;"><br>
</span></p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;">p: +44 1603 450378</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(13, 102, 213);"><span style="color: rgb(0, 0, 0); font-size: 10px;">e: <a href="mailto:timothy.stitt@tgac.ac.uk">timothy.stitt@tgac.ac.uk</a></span></p>
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<span style="font-weight:bold">From: </span>Justin M Wozniak <<a href="mailto:wozniak@mcs.anl.gov">wozniak@mcs.anl.gov</a>><br>
<span style="font-weight:bold">Date: </span>Tuesday, 17 March 2015 15:17<br>
<span style="font-weight:bold">To: </span>Timothy Stitt <<a href="mailto:timothy.stitt@tgac.ac.uk">timothy.stitt@tgac.ac.uk</a>>, "<a href="mailto:exm-user@lists.mcs.anl.gov">exm-user@lists.mcs.anl.gov</a>" <<a href="mailto:exm-user@lists.mcs.anl.gov">exm-user@lists.mcs.anl.gov</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [ExM Users] Suppressing string_join() output<br>
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Sorry- those are not supposed to be there. You can comment them out of the Turbine source:
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lib/string.tcl:336: puts "cont: $container"<br>
lib/string.tcl:338: puts "Keys: $sorted_keys cont: $container"<br>
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then just 'make install' and try again. <br>
<br>
On 03/17/2015 10:07 AM, Timothy Stitt (TGAC) wrote:<br>
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<blockquote cite="mid:D12DF3AA.121CF%25timothy.stitt@tgac.ac.uk" type="cite">
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<div>Hi all,</div>
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<div>I'm using the string_join() routine to concatenate the elements of a string array. For some reason I'm getting debug output (see example below) which I can't seem to suppress (even with TURBINE_LOG=0). </div>
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<div>…</div>
<div>cont: 5 --model 2 chunk.3 6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4 ecoli.fa 7 --score 8 50</div>
<div>Keys: 0 1 2 3 4 5 6 7 8 9 10 cont: 5 --model 2 chunk.3 6 protein2genome 0 ./exonerate_gcc 9 --percent 3 --target 1 --query 10 50.0 4 ecoli.fa 7 --score 8 50</div>
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<div>…</div>
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<div>Is there a quick fix to prevent this type of output being sent to stdout?</div>
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<div>Thanks,</div>
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<div>Tim.</div>
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<p style="font-size: 12px; margin: 0px; font-family:
Verdana;">---</p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;"><b>Timothy Stitt PhD</b> / Head of Scientific Computing</span></p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;">The Genome Analysis Centre (TGAC)</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(4,
46, 238);">
<span style="text-decoration: underline;
font-size: 10px;"><a moz-do-not-send="true" href="http://www.tgac.ac.uk/">http://www.tgac.ac.uk/</a></span></p>
<p style="margin: 0px; font-family: Cambria; min-height:
19px;"><span style="font-size: 10px;"><br>
</span></p>
<p style="margin: 0px; font-family: Verdana;"><span style="font-size: 10px;">p: +44 1603 450378</span></p>
<p style="margin: 0px; font-family: Verdana; color: rgb(13,
102, 213);">
<span style="color: rgb(0, 0, 0); font-size:
10px;">e: <a moz-do-not-send="true" href="mailto:timothy.stitt@tgac.ac.uk">timothy.stitt@tgac.ac.uk</a></span></p>
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<pre class="moz-signature" cols="72">--
Justin M Wozniak</pre>
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