[Darshan-users] darshan output from log

Tue May 24 22:15:11 CDT 2011

Sorry, I meant: I installed gnuplot from source and put its bin in PATH!

On 5/24/11 10:12 PM, ketan wrote:
> Thanks Phil,
>
> I installed gnuplot from source and put its bin in bin. That did the 
> trick.
>
> Ketan
>
>
> On 5/24/11 8:41 PM, Phil Carns wrote:
>> Hi Ketan,
>>
>> You need a newer version of gnuplot.  If you download the source from 
>> the gnuplot web site and compile it, you can just copy the resulting 
>> gnuplot binary to the ~/darshan-install/bin/ directory and 
>> darshan-job-summary.pl will automatically detect it and use it in 
>> place of the default gnuplot installed on the system.
>>
>> -Phil
>>
>> On 05/24/2011 07:34 PM, ketan wrote:
>>> Hi,
>>>
>>> I tried to copy the share folder manually from darshan source tree 
>>> to darshan-install. Now I get a better output yet the pdf file 
>>> generation is not complete.
>>>
>>> [login.ci.uchicago.edu:24]$ 
>>> ~/darshan-install/bin/darshan-job-summary.pl 
>>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz 
>>> --output ~/job-summary.pdf
>>> Slowest unique file time: 0
>>> Slowest shared file time: 0.058647
>>> Total bytes read and written by app (may be incorrect): 243
>>> Total absolute I/O time: 0.058647
>>>
>>> gnuplot> set style data histogram
>>>                                  ^
>>>          "counts-eps.gplt", line 7: expecting 'lines', 'points', 
>>> 'linespoints', 'dots', 'impulses',
>>>     'yerrorbars', 'xerrorbars', 'xyerrorbars', 'steps', 'fsteps',
>>>     'histeps', 'filledcurves', 'boxes', 'boxerrorbars', 
>>> 'boxxyerrorbars',
>>>     'vectors', 'financebars', 'candlesticks', 'errorlines', 
>>> 'xerrorlines',
>>>     'yerrorlines', 'xyerrorlines', 'pm3d'
>>>
>>> ==> Warning: BoundingBox not found!
>>>          "hist-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'hist.eps' does not exist!
>>>          "pattern-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'pattern.eps' does not exist!
>>>          "time-summary-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'time-summary.eps' does not exist!
>>>          "file-access-read-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'file-access-read.eps' does not exist!
>>>          "file-access-write-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'file-access-write.eps' does not exist!
>>>          "file-access-shared-eps.gplt", line 3: undefined variable: 
>>> font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'file-access-shared.eps' does not exist!
>>> LaTeX generation (phase1) failed [65280], aborting summary creation.
>>> error log:
>>> loading : Context Support Macros / PDF (2004.03.26)
>>> ) (./job-table.tex)
>>> Overfull \hbox (18.76118pt too wide) in paragraph at lines 39--39
>>>  [][]
>>>
>>> LaTeX Warning: File `time-summary.pdf' not found on input line 43.
>>>
>>>
>>> Error: pdflatex (file time-summary.pdf): cannot find image file
>>>  ==> Fatal error occurred, the output PDF file is not finished!
>>>
>>>
>>> How should I debug this?
>>>
>>> Regards,
>>> Ketan
>>>
>>>
>>> On 5/24/11 12:02 PM, Kevin Harms wrote:
>>>> Ketan,
>>>>
>>>>    Those files (home/ketan/darshan-install/share/*) should have 
>>>> been copied by 'make install'. darshan-job-summary.pl also requires 
>>>> gnuplot-4.2+ and pdflatex.
>>>>
>>>>    You can check<source dir>/util/share and see if the files are 
>>>> there and then try make install and see where it tries to copy them.
>>>>
>>>> kevin
>>>>
>>>> On May 24, 2011, at 11:47 AM, ketan wrote:
>>>>
>>>>> Hello,
>>>>>
>>>>> Now, I have been able to use Darshan as far as generating the 
>>>>> Darshan log from the binary execution. However, when I try to 
>>>>> generate the output.pdf report as shown in darshan wiki:
>>>>>
>>>>> ~/darshan-install/bin/darshan-job-summary.pl 
>>>>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz --output 
>>>>> ~/job-summary.pdf
>>>>>
>>>>> I get the following:
>>>>>
>>>>> cp: cannot stat `/home/ketan/darshan-install/share/*.gplt': No 
>>>>> such file or directory
>>>>> cp: cannot stat `/home/ketan/darshan-install/share/*.tex': No such 
>>>>> file or directory
>>>>> Slowest unique file time: 0
>>>>> Slowest shared file time: 0.058647
>>>>> Total bytes read and written by app (may be incorrect): 243
>>>>> Total absolute I/O time: 0.058647
>>>>>          Cannot open load file 'counts-eps.gplt'
>>>>>          line 0: util.c: No such file or directory
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'counts.eps' does not exist!
>>>>>          Cannot open load file 'hist-eps.gplt'
>>>>>          line 0: util.c: No such file or directory
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'hist.eps' does not exist!
>>>>>          Cannot open load file 'pattern-eps.gplt'
>>>>>          line 0: util.c: No such file or directory
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'pattern.eps' does not exist!
>>>>>          Cannot open load file 'time-summary-eps.gplt'
>>>>>          line 0: util.c: No such file or directory
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'time-summary.eps' does not exist!
>>>>>          "file-access-read-eps.gplt", line 3: undefined variable: 
>>>>> font
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'file-access-read.eps' does not exist!
>>>>>          "file-access-write-eps.gplt", line 3: undefined variable: 
>>>>> font
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'file-access-write.eps' does not exist!
>>>>>          "file-access-shared-eps.gplt", line 3: undefined 
>>>>> variable: font
>>>>>
>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>>> Rahtz et al.
>>>>> !!! Error: 'file-access-shared.eps' does not exist!
>>>>>
>>>>> <does not return??>
>>>>>
>>>>> Any clue where to find the files (templates?) that it is missing?
>>>>>
>>>>> Regards,
>>>>> Ketan
>>>>>
>>>>> _______________________________________________
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>>
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