[Darshan-users] darshan output from log
ketan
ketan at mcs.anl.gov
Tue May 24 22:12:20 CDT 2011
Thanks Phil,
I installed gnuplot from source and put its bin in bin. That did the trick.
Ketan
On 5/24/11 8:41 PM, Phil Carns wrote:
> Hi Ketan,
>
> You need a newer version of gnuplot. If you download the source from
> the gnuplot web site and compile it, you can just copy the resulting
> gnuplot binary to the ~/darshan-install/bin/ directory and
> darshan-job-summary.pl will automatically detect it and use it in
> place of the default gnuplot installed on the system.
>
> -Phil
>
> On 05/24/2011 07:34 PM, ketan wrote:
>> Hi,
>>
>> I tried to copy the share folder manually from darshan source tree to
>> darshan-install. Now I get a better output yet the pdf file
>> generation is not complete.
>>
>> [login.ci.uchicago.edu:24]$
>> ~/darshan-install/bin/darshan-job-summary.pl
>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz
>> --output ~/job-summary.pdf
>> Slowest unique file time: 0
>> Slowest shared file time: 0.058647
>> Total bytes read and written by app (may be incorrect): 243
>> Total absolute I/O time: 0.058647
>>
>> gnuplot> set style data histogram
>> ^
>> "counts-eps.gplt", line 7: expecting 'lines', 'points',
>> 'linespoints', 'dots', 'impulses',
>> 'yerrorbars', 'xerrorbars', 'xyerrorbars', 'steps', 'fsteps',
>> 'histeps', 'filledcurves', 'boxes', 'boxerrorbars',
>> 'boxxyerrorbars',
>> 'vectors', 'financebars', 'candlesticks', 'errorlines',
>> 'xerrorlines',
>> 'yerrorlines', 'xyerrorlines', 'pm3d'
>>
>> ==> Warning: BoundingBox not found!
>> "hist-eps.gplt", line 3: undefined variable: font
>>
>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>> Rahtz et al.
>> !!! Error: 'hist.eps' does not exist!
>> "pattern-eps.gplt", line 3: undefined variable: font
>>
>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>> Rahtz et al.
>> !!! Error: 'pattern.eps' does not exist!
>> "time-summary-eps.gplt", line 3: undefined variable: font
>>
>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>> Rahtz et al.
>> !!! Error: 'time-summary.eps' does not exist!
>> "file-access-read-eps.gplt", line 3: undefined variable: font
>>
>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>> Rahtz et al.
>> !!! Error: 'file-access-read.eps' does not exist!
>> "file-access-write-eps.gplt", line 3: undefined variable: font
>>
>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>> Rahtz et al.
>> !!! Error: 'file-access-write.eps' does not exist!
>> "file-access-shared-eps.gplt", line 3: undefined variable: font
>>
>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>> Rahtz et al.
>> !!! Error: 'file-access-shared.eps' does not exist!
>> LaTeX generation (phase1) failed [65280], aborting summary creation.
>> error log:
>> loading : Context Support Macros / PDF (2004.03.26)
>> ) (./job-table.tex)
>> Overfull \hbox (18.76118pt too wide) in paragraph at lines 39--39
>> [][]
>>
>> LaTeX Warning: File `time-summary.pdf' not found on input line 43.
>>
>>
>> Error: pdflatex (file time-summary.pdf): cannot find image file
>> ==> Fatal error occurred, the output PDF file is not finished!
>>
>>
>> How should I debug this?
>>
>> Regards,
>> Ketan
>>
>>
>> On 5/24/11 12:02 PM, Kevin Harms wrote:
>>> Ketan,
>>>
>>> Those files (home/ketan/darshan-install/share/*) should have been
>>> copied by 'make install'. darshan-job-summary.pl also requires
>>> gnuplot-4.2+ and pdflatex.
>>>
>>> You can check<source dir>/util/share and see if the files are
>>> there and then try make install and see where it tries to copy them.
>>>
>>> kevin
>>>
>>> On May 24, 2011, at 11:47 AM, ketan wrote:
>>>
>>>> Hello,
>>>>
>>>> Now, I have been able to use Darshan as far as generating the
>>>> Darshan log from the binary execution. However, when I try to
>>>> generate the output.pdf report as shown in darshan wiki:
>>>>
>>>> ~/darshan-install/bin/darshan-job-summary.pl
>>>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz
>>>> --output ~/job-summary.pdf
>>>>
>>>> I get the following:
>>>>
>>>> cp: cannot stat `/home/ketan/darshan-install/share/*.gplt': No such
>>>> file or directory
>>>> cp: cannot stat `/home/ketan/darshan-install/share/*.tex': No such
>>>> file or directory
>>>> Slowest unique file time: 0
>>>> Slowest shared file time: 0.058647
>>>> Total bytes read and written by app (may be incorrect): 243
>>>> Total absolute I/O time: 0.058647
>>>> Cannot open load file 'counts-eps.gplt'
>>>> line 0: util.c: No such file or directory
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'counts.eps' does not exist!
>>>> Cannot open load file 'hist-eps.gplt'
>>>> line 0: util.c: No such file or directory
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'hist.eps' does not exist!
>>>> Cannot open load file 'pattern-eps.gplt'
>>>> line 0: util.c: No such file or directory
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'pattern.eps' does not exist!
>>>> Cannot open load file 'time-summary-eps.gplt'
>>>> line 0: util.c: No such file or directory
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'time-summary.eps' does not exist!
>>>> "file-access-read-eps.gplt", line 3: undefined variable: font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'file-access-read.eps' does not exist!
>>>> "file-access-write-eps.gplt", line 3: undefined variable:
>>>> font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'file-access-write.eps' does not exist!
>>>> "file-access-shared-eps.gplt", line 3: undefined variable:
>>>> font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian
>>>> Rahtz et al.
>>>> !!! Error: 'file-access-shared.eps' does not exist!
>>>>
>>>> <does not return??>
>>>>
>>>> Any clue where to find the files (templates?) that it is missing?
>>>>
>>>> Regards,
>>>> Ketan
>>>>
>>>> _______________________________________________
>>>> Darshan-users mailing list
>>>> Darshan-users at lists.mcs.anl.gov
>>>> https://lists.mcs.anl.gov/mailman/listinfo/darshan-users
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