[Darshan-users] darshan output from log

Phil Carns carns at mcs.anl.gov
Wed May 25 05:25:44 CDT 2011 

Great!  I'm glad to hear that it is working.

-Phil

On 05/24/2011 11:15 PM, ketan wrote:
> Sorry, I meant: I installed gnuplot from source and put its bin in PATH!
>
> On 5/24/11 10:12 PM, ketan wrote:
>> Thanks Phil,
>>
>> I installed gnuplot from source and put its bin in bin. That did the 
>> trick.
>>
>> Ketan
>>
>>
>> On 5/24/11 8:41 PM, Phil Carns wrote:
>>> Hi Ketan,
>>>
>>> You need a newer version of gnuplot.  If you download the source 
>>> from the gnuplot web site and compile it, you can just copy the 
>>> resulting gnuplot binary to the ~/darshan-install/bin/ directory and 
>>> darshan-job-summary.pl will automatically detect it and use it in 
>>> place of the default gnuplot installed on the system.
>>>
>>> -Phil
>>>
>>> On 05/24/2011 07:34 PM, ketan wrote:
>>>> Hi,
>>>>
>>>> I tried to copy the share folder manually from darshan source tree 
>>>> to darshan-install. Now I get a better output yet the pdf file 
>>>> generation is not complete.
>>>>
>>>> [login.ci.uchicago.edu:24]$ 
>>>> ~/darshan-install/bin/darshan-job-summary.pl 
>>>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz 
>>>> --output ~/job-summary.pdf
>>>> Slowest unique file time: 0
>>>> Slowest shared file time: 0.058647
>>>> Total bytes read and written by app (may be incorrect): 243
>>>> Total absolute I/O time: 0.058647
>>>>
>>>> gnuplot> set style data histogram
>>>>                                  ^
>>>>          "counts-eps.gplt", line 7: expecting 'lines', 'points', 
>>>> 'linespoints', 'dots', 'impulses',
>>>>     'yerrorbars', 'xerrorbars', 'xyerrorbars', 'steps', 'fsteps',
>>>>     'histeps', 'filledcurves', 'boxes', 'boxerrorbars', 
>>>> 'boxxyerrorbars',
>>>>     'vectors', 'financebars', 'candlesticks', 'errorlines', 
>>>> 'xerrorlines',
>>>>     'yerrorlines', 'xyerrorlines', 'pm3d'
>>>>
>>>> ==> Warning: BoundingBox not found!
>>>>          "hist-eps.gplt", line 3: undefined variable: font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>> Rahtz et al.
>>>> !!! Error: 'hist.eps' does not exist!
>>>>          "pattern-eps.gplt", line 3: undefined variable: font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>> Rahtz et al.
>>>> !!! Error: 'pattern.eps' does not exist!
>>>>          "time-summary-eps.gplt", line 3: undefined variable: font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>> Rahtz et al.
>>>> !!! Error: 'time-summary.eps' does not exist!
>>>>          "file-access-read-eps.gplt", line 3: undefined variable: font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>> Rahtz et al.
>>>> !!! Error: 'file-access-read.eps' does not exist!
>>>>          "file-access-write-eps.gplt", line 3: undefined variable: 
>>>> font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>> Rahtz et al.
>>>> !!! Error: 'file-access-write.eps' does not exist!
>>>>          "file-access-shared-eps.gplt", line 3: undefined variable: 
>>>> font
>>>>
>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>>> Rahtz et al.
>>>> !!! Error: 'file-access-shared.eps' does not exist!
>>>> LaTeX generation (phase1) failed [65280], aborting summary creation.
>>>> error log:
>>>> loading : Context Support Macros / PDF (2004.03.26)
>>>> ) (./job-table.tex)
>>>> Overfull \hbox (18.76118pt too wide) in paragraph at lines 39--39
>>>>  [][]
>>>>
>>>> LaTeX Warning: File `time-summary.pdf' not found on input line 43.
>>>>
>>>>
>>>> Error: pdflatex (file time-summary.pdf): cannot find image file
>>>>  ==> Fatal error occurred, the output PDF file is not finished!
>>>>
>>>>
>>>> How should I debug this?
>>>>
>>>> Regards,
>>>> Ketan
>>>>
>>>>
>>>> On 5/24/11 12:02 PM, Kevin Harms wrote:
>>>>> Ketan,
>>>>>
>>>>>    Those files (home/ketan/darshan-install/share/*) should have 
>>>>> been copied by 'make install'. darshan-job-summary.pl also 
>>>>> requires gnuplot-4.2+ and pdflatex.
>>>>>
>>>>>    You can check<source dir>/util/share and see if the files are 
>>>>> there and then try make install and see where it tries to copy them.
>>>>>
>>>>> kevin
>>>>>
>>>>> On May 24, 2011, at 11:47 AM, ketan wrote:
>>>>>
>>>>>> Hello,
>>>>>>
>>>>>> Now, I have been able to use Darshan as far as generating the 
>>>>>> Darshan log from the binary execution. However, when I try to 
>>>>>> generate the output.pdf report as shown in darshan wiki:
>>>>>>
>>>>>> ~/darshan-install/bin/darshan-job-summary.pl 
>>>>>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz 
>>>>>> --output ~/job-summary.pdf
>>>>>>
>>>>>> I get the following:
>>>>>>
>>>>>> cp: cannot stat `/home/ketan/darshan-install/share/*.gplt': No 
>>>>>> such file or directory
>>>>>> cp: cannot stat `/home/ketan/darshan-install/share/*.tex': No 
>>>>>> such file or directory
>>>>>> Slowest unique file time: 0
>>>>>> Slowest shared file time: 0.058647
>>>>>> Total bytes read and written by app (may be incorrect): 243
>>>>>> Total absolute I/O time: 0.058647
>>>>>>          Cannot open load file 'counts-eps.gplt'
>>>>>>          line 0: util.c: No such file or directory
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'counts.eps' does not exist!
>>>>>>          Cannot open load file 'hist-eps.gplt'
>>>>>>          line 0: util.c: No such file or directory
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'hist.eps' does not exist!
>>>>>>          Cannot open load file 'pattern-eps.gplt'
>>>>>>          line 0: util.c: No such file or directory
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'pattern.eps' does not exist!
>>>>>>          Cannot open load file 'time-summary-eps.gplt'
>>>>>>          line 0: util.c: No such file or directory
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'time-summary.eps' does not exist!
>>>>>>          "file-access-read-eps.gplt", line 3: undefined variable: 
>>>>>> font
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'file-access-read.eps' does not exist!
>>>>>>          "file-access-write-eps.gplt", line 3: undefined 
>>>>>> variable: font
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'file-access-write.eps' does not exist!
>>>>>>          "file-access-shared-eps.gplt", line 3: undefined 
>>>>>> variable: font
>>>>>>
>>>>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by 
>>>>>> Sebastian Rahtz et al.
>>>>>> !!! Error: 'file-access-shared.eps' does not exist!
>>>>>>
>>>>>> <does not return??>
>>>>>>
>>>>>> Any clue where to find the files (templates?) that it is missing?
>>>>>>
>>>>>> Regards,
>>>>>> Ketan
>>>>>>
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