[Darshan-users] darshan output from log

Tue May 24 20:41:08 CDT 2011

Hi Ketan,

You need a newer version of gnuplot.  If you download the source from 
the gnuplot web site and compile it, you can just copy the resulting 
gnuplot binary to the ~/darshan-install/bin/ directory and 
darshan-job-summary.pl will automatically detect it and use it in place 
of the default gnuplot installed on the system.

-Phil

On 05/24/2011 07:34 PM, ketan wrote:
> Hi,
>
> I tried to copy the share folder manually from darshan source tree to 
> darshan-install. Now I get a better output yet the pdf file generation 
> is not complete.
>
> [login.ci.uchicago.edu:24]$ 
> ~/darshan-install/bin/darshan-job-summary.pl 
> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz 
> --output ~/job-summary.pdf
> Slowest unique file time: 0
> Slowest shared file time: 0.058647
> Total bytes read and written by app (may be incorrect): 243
> Total absolute I/O time: 0.058647
>
> gnuplot> set style data histogram
>                                  ^
>          "counts-eps.gplt", line 7: expecting 'lines', 'points', 
> 'linespoints', 'dots', 'impulses',
>     'yerrorbars', 'xerrorbars', 'xyerrorbars', 'steps', 'fsteps',
>     'histeps', 'filledcurves', 'boxes', 'boxerrorbars', 'boxxyerrorbars',
>     'vectors', 'financebars', 'candlesticks', 'errorlines', 
> 'xerrorlines',
>     'yerrorlines', 'xyerrorlines', 'pm3d'
>
> ==> Warning: BoundingBox not found!
>          "hist-eps.gplt", line 3: undefined variable: font
>
> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
> Rahtz et al.
> !!! Error: 'hist.eps' does not exist!
>          "pattern-eps.gplt", line 3: undefined variable: font
>
> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
> Rahtz et al.
> !!! Error: 'pattern.eps' does not exist!
>          "time-summary-eps.gplt", line 3: undefined variable: font
>
> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
> Rahtz et al.
> !!! Error: 'time-summary.eps' does not exist!
>          "file-access-read-eps.gplt", line 3: undefined variable: font
>
> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
> Rahtz et al.
> !!! Error: 'file-access-read.eps' does not exist!
>          "file-access-write-eps.gplt", line 3: undefined variable: font
>
> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
> Rahtz et al.
> !!! Error: 'file-access-write.eps' does not exist!
>          "file-access-shared-eps.gplt", line 3: undefined variable: font
>
> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
> Rahtz et al.
> !!! Error: 'file-access-shared.eps' does not exist!
> LaTeX generation (phase1) failed [65280], aborting summary creation.
> error log:
> loading : Context Support Macros / PDF (2004.03.26)
> ) (./job-table.tex)
> Overfull \hbox (18.76118pt too wide) in paragraph at lines 39--39
>  [][]
>
> LaTeX Warning: File `time-summary.pdf' not found on input line 43.
>
>
> Error: pdflatex (file time-summary.pdf): cannot find image file
>  ==> Fatal error occurred, the output PDF file is not finished!
>
>
> How should I debug this?
>
> Regards,
> Ketan
>
>
> On 5/24/11 12:02 PM, Kevin Harms wrote:
>> Ketan,
>>
>>    Those files (home/ketan/darshan-install/share/*) should have been 
>> copied by 'make install'. darshan-job-summary.pl also requires 
>> gnuplot-4.2+ and pdflatex.
>>
>>    You can check<source dir>/util/share and see if the files are 
>> there and then try make install and see where it tries to copy them.
>>
>> kevin
>>
>> On May 24, 2011, at 11:47 AM, ketan wrote:
>>
>>> Hello,
>>>
>>> Now, I have been able to use Darshan as far as generating the 
>>> Darshan log from the binary execution. However, when I try to 
>>> generate the output.pdf report as shown in darshan wiki:
>>>
>>> ~/darshan-install/bin/darshan-job-summary.pl 
>>> ketan_modftdock_id9643_5-24-42129-16735182948803816265_1.darshan.gz 
>>> --output ~/job-summary.pdf
>>>
>>> I get the following:
>>>
>>> cp: cannot stat `/home/ketan/darshan-install/share/*.gplt': No such 
>>> file or directory
>>> cp: cannot stat `/home/ketan/darshan-install/share/*.tex': No such 
>>> file or directory
>>> Slowest unique file time: 0
>>> Slowest shared file time: 0.058647
>>> Total bytes read and written by app (may be incorrect): 243
>>> Total absolute I/O time: 0.058647
>>>          Cannot open load file 'counts-eps.gplt'
>>>          line 0: util.c: No such file or directory
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'counts.eps' does not exist!
>>>          Cannot open load file 'hist-eps.gplt'
>>>          line 0: util.c: No such file or directory
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'hist.eps' does not exist!
>>>          Cannot open load file 'pattern-eps.gplt'
>>>          line 0: util.c: No such file or directory
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'pattern.eps' does not exist!
>>>          Cannot open load file 'time-summary-eps.gplt'
>>>          line 0: util.c: No such file or directory
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'time-summary.eps' does not exist!
>>>          "file-access-read-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'file-access-read.eps' does not exist!
>>>          "file-access-write-eps.gplt", line 3: undefined variable: font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'file-access-write.eps' does not exist!
>>>          "file-access-shared-eps.gplt", line 3: undefined variable: 
>>> font
>>>
>>> EPSTOPDF 2.9.3draft, 2003/04/20 - Copyright 1998-2002 by Sebastian 
>>> Rahtz et al.
>>> !!! Error: 'file-access-shared.eps' does not exist!
>>>
>>> <does not return??>
>>>
>>> Any clue where to find the files (templates?) that it is missing?
>>>
>>> Regards,
>>> Ketan
>>>
>>> _______________________________________________
>>> Darshan-users mailing list
>>> Darshan-users at lists.mcs.anl.gov
>>> https://lists.mcs.anl.gov/mailman/listinfo/darshan-users
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