[petsc-users] Unable to configure PETSc with CUDA: Problem with thrust directory
Christophe Ortiz
christophe.ortiz at ciemat.es
Fri Aug 29 02:35:22 CDT 2014
Hi Dominic and Paul,
Thanks for your answers. Unfortunately, it did not work. Same error message
related to the thrust directory:
./configure --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
--with-clanguage=cxx --with-fc=ifort --with-cuda=1
--with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35 --with-thrust=1
--with-thrust-dir=/usr/local/cuda-6.0/include --with-cusp=1
--with-cusp-dir=/usr/local/cuda-6.0/include --with-debugging=1
--with-scalar-type=real --with-precision=double --download-fblaslapack
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
TESTING: checkInclude from
config.headers(config/BuildSystem/config/headers.py:86)
*******************************************************************************
UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
details):
-------------------------------------------------------------------------------
--with-thrust-dir=/usr/local/cuda-6.0/include did not work
*******************************************************************************
I do not see what else to do...I have a standard CUDA installation that
came with thrust.
I am using ubuntu 12.04, I do not know if that could help.
I tried with PETSc 3.4.1 and 3.5.1. Same problem.
Christophe
> ------------------------------
>
> Message: 3
> Date: Thu, 28 Aug 2014 08:38:12 -0600
> From: Dominic Meiser <dmeiser at txcorp.com>
> To: petsc-users at mcs.anl.gov
> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
> Problem with thrust directory
> Message-ID: <53FF3ED4.1090002 at txcorp.com>
> Content-Type: text/plain; charset=UTF-8; format=flowed
>
> Can you try configuring with
>
> --with-thrust-dir=/usr/local/cuda-6.0/include
>
> I.e. omit the 'thrust' at the end of the path. Probably you'll need the
> same fix with cusp:
>
> --with-cusp-dir=/usr/local/cuda-6.0/include
>
> Cheers,
> Dominic
>
>
> On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
> > Hi all,
> >
> > I have implemented a problem of coupled diffusion equations in 1D
> > using PETSc. I was able to configure PETSC with and without MPI. The
> > code runs well in both cases.
> >
> > Now I would like to test CUDA but I am unable to configure it. I get
> > an error message related to thrust directory.
> >
> > The options I use to configure are the following:
> >
> > --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
> > --with-clanguage=cxx --with-fc=ifort --with-cuda=1
> > --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
> > --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
> > --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
> > --download-txpetscgpu=1 --with-debugging=1 --with-scalar-type=real
> > --with-precision=double --download-f-blas-lapack
> >
> > The error message I get is:
> >
> >
> ===============================================================================
> > Configuring PETSc to compile on your system
> >
> ===============================================================================
> > TESTING: checkInclude from
> > config.headers(config/BuildSystem/config/headers.py:86)
> >
> *******************************************************************************
> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> > for details):
> >
> -------------------------------------------------------------------------------
> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
> >
> *******************************************************************************
> >
> >
> > Did I miss something ?
> > My GPU is a GeForce Titan Black and I am using CUDA 6.0.
> >
> > Many thanks in advance for your help.
> > Christophe
> >
>
>
> --
> Dominic Meiser
> Tech-X Corporation
> 5621 Arapahoe Avenue
> Boulder, CO 80303
> USA
> Telephone: 303-996-2036
> Fax: 303-448-7756
> www.txcorp.com
>
>
>
> ------------------------------
>
> Message: 4
> Date: Thu, 28 Aug 2014 08:30:40 -0600
> From: Paul Mullowney <paulmullowney at gmail.com>
> To: Dominic Meiser <dmeiser at txcorp.com>
> Cc: petsc-users at mcs.anl.gov
> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
> Problem with thrust directory
> Message-ID:
> <CAMJ8fwroFUxG-rpbMpaJEw=
> 0aQdyNm9NMxMzsxWVGGPWZqhGCQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Also, get rid of --download-txpetscgpu=1. That doesn't exist anymore.
> -Paul
>
>
> On Thu, Aug 28, 2014 at 8:38 AM, Dominic Meiser <dmeiser at txcorp.com>
> wrote:
>
> > Can you try configuring with
> >
> > --with-thrust-dir=/usr/local/cuda-6.0/include
> >
> > I.e. omit the 'thrust' at the end of the path. Probably you'll need the
> > same fix with cusp:
> >
> > --with-cusp-dir=/usr/local/cuda-6.0/include
> >
> > Cheers,
> > Dominic
> >
> >
> > On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
> >
> >> Hi all,
> >>
> >> I have implemented a problem of coupled diffusion equations in 1D using
> >> PETSc. I was able to configure PETSC with and without MPI. The code runs
> >> well in both cases.
> >>
> >> Now I would like to test CUDA but I am unable to configure it. I get an
> >> error message related to thrust directory.
> >>
> >> The options I use to configure are the following:
> >>
> >> --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
> >> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
> >> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
> >> --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
> >> --with-cusp-dir=/usr/local/cuda-6.0/include/cusp --download-txpetscgpu=1
> >> --with-debugging=1 --with-scalar-type=real --with-precision=double
> >> --download-f-blas-lapack
> >>
> >> The error message I get is:
> >>
> >> ============================================================
> >> ===================
> >> Configuring PETSc to compile on your system
> >> ============================================================
> >> ===================
> >> TESTING: checkInclude from config.headers(config/
> >> BuildSystem/config/headers.py:86) ******************************
> >> *************************************************
> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
> for
> >> details):
> >> ------------------------------------------------------------
> >> -------------------
> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
> >> ************************************************************
> >> *******************
> >>
> >>
> >> Did I miss something ?
> >> My GPU is a GeForce Titan Black and I am using CUDA 6.0.
> >>
> >> Many thanks in advance for your help.
> >> Christophe
> >>
> >>
> >
> > --
> > Dominic Meiser
> > Tech-X Corporation
> > 5621 Arapahoe Avenue
> > Boulder, CO 80303
> > USA
> > Telephone: 303-996-2036
> > Fax: 303-448-7756
> > www.txcorp.com
> >
> >
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