[petsc-users] Unable to configure PETSc with CUDA: Problem with thrust directory
Matthew Knepley
knepley at gmail.com
Fri Aug 29 08:28:28 CDT 2014
Always attach configure.log or we cannot see what went wrong.
Matt
On Fri, Aug 29, 2014 at 2:35 AM, Christophe Ortiz <
christophe.ortiz at ciemat.es> wrote:
> Hi Dominic and Paul,
>
> Thanks for your answers. Unfortunately, it did not work. Same error
> message related to the thrust directory:
>
>
> ./configure --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35 --with-thrust=1
> --with-thrust-dir=/usr/local/cuda-6.0/include --with-cusp=1
> --with-cusp-dir=/usr/local/cuda-6.0/include --with-debugging=1
> --with-scalar-type=real --with-precision=double --download-fblaslapack
>
> ===============================================================================
> Configuring PETSc to compile on your system
>
>
> ===============================================================================
> TESTING: checkInclude from
> config.headers(config/BuildSystem/config/headers.py:86)
>
> *******************************************************************************
> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> details):
>
> -------------------------------------------------------------------------------
> --with-thrust-dir=/usr/local/cuda-6.0/include did not work
>
> *******************************************************************************
>
>
> I do not see what else to do...I have a standard CUDA installation that
> came with thrust.
> I am using ubuntu 12.04, I do not know if that could help.
> I tried with PETSc 3.4.1 and 3.5.1. Same problem.
>
> Christophe
>
>
>
>
>
>> ------------------------------
>>
>> Message: 3
>> Date: Thu, 28 Aug 2014 08:38:12 -0600
>> From: Dominic Meiser <dmeiser at txcorp.com>
>> To: petsc-users at mcs.anl.gov
>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>> Problem with thrust directory
>> Message-ID: <53FF3ED4.1090002 at txcorp.com>
>> Content-Type: text/plain; charset=UTF-8; format=flowed
>>
>> Can you try configuring with
>>
>> --with-thrust-dir=/usr/local/cuda-6.0/include
>>
>> I.e. omit the 'thrust' at the end of the path. Probably you'll need the
>> same fix with cusp:
>>
>> --with-cusp-dir=/usr/local/cuda-6.0/include
>>
>> Cheers,
>> Dominic
>>
>
>
>
>>
>> On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>> > Hi all,
>> >
>> > I have implemented a problem of coupled diffusion equations in 1D
>> > using PETSc. I was able to configure PETSC with and without MPI. The
>> > code runs well in both cases.
>> >
>> > Now I would like to test CUDA but I am unable to configure it. I get
>> > an error message related to thrust directory.
>> >
>> > The options I use to configure are the following:
>> >
>> > --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>> > --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>> > --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>> > --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>> > --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>> > --download-txpetscgpu=1 --with-debugging=1 --with-scalar-type=real
>> > --with-precision=double --download-f-blas-lapack
>> >
>> > The error message I get is:
>> >
>> >
>> ===============================================================================
>> > Configuring PETSc to compile on your system
>> >
>> ===============================================================================
>> > TESTING: checkInclude from
>> > config.headers(config/BuildSystem/config/headers.py:86)
>> >
>> *******************************************************************************
>> > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>> > for details):
>> >
>> -------------------------------------------------------------------------------
>> > --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>> >
>> *******************************************************************************
>> >
>> >
>> > Did I miss something ?
>> > My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>> >
>> > Many thanks in advance for your help.
>> > Christophe
>> >
>>
>>
>> --
>> Dominic Meiser
>> Tech-X Corporation
>> 5621 Arapahoe Avenue
>> Boulder, CO 80303
>> USA
>> Telephone: 303-996-2036
>> Fax: 303-448-7756
>> www.txcorp.com
>>
>>
>>
>> ------------------------------
>>
>> Message: 4
>> Date: Thu, 28 Aug 2014 08:30:40 -0600
>> From: Paul Mullowney <paulmullowney at gmail.com>
>> To: Dominic Meiser <dmeiser at txcorp.com>
>> Cc: petsc-users at mcs.anl.gov
>> Subject: Re: [petsc-users] Unable to configure PETSc with CUDA:
>> Problem with thrust directory
>> Message-ID:
>> <CAMJ8fwroFUxG-rpbMpaJEw=
>> 0aQdyNm9NMxMzsxWVGGPWZqhGCQ at mail.gmail.com>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Also, get rid of --download-txpetscgpu=1. That doesn't exist anymore.
>> -Paul
>>
>>
>> On Thu, Aug 28, 2014 at 8:38 AM, Dominic Meiser <dmeiser at txcorp.com>
>> wrote:
>>
>> > Can you try configuring with
>> >
>> > --with-thrust-dir=/usr/local/cuda-6.0/include
>> >
>> > I.e. omit the 'thrust' at the end of the path. Probably you'll need the
>> > same fix with cusp:
>> >
>> > --with-cusp-dir=/usr/local/cuda-6.0/include
>> >
>> > Cheers,
>> > Dominic
>> >
>> >
>> > On 08/28/2014 08:13 AM, Christophe Ortiz wrote:
>> >
>> >> Hi all,
>> >>
>> >> I have implemented a problem of coupled diffusion equations in 1D using
>> >> PETSc. I was able to configure PETSC with and without MPI. The code
>> runs
>> >> well in both cases.
>> >>
>> >> Now I would like to test CUDA but I am unable to configure it. I get an
>> >> error message related to thrust directory.
>> >>
>> >> The options I use to configure are the following:
>> >>
>> >> --with-x=1 --with-mpi=0 --with-cc=icc --with-cxx=icpc
>> >> --with-clanguage=cxx --with-fc=ifort --with-cuda=1
>> >> --with-cuda-dir=/usr/local/cuda-6.0 --with-cuda-arch=sm_35
>> >> --with-cudac=/usr/local/cuda/bin/nvcc --with-thrust=1
>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust --with-cusp=1
>> >> --with-cusp-dir=/usr/local/cuda-6.0/include/cusp
>> --download-txpetscgpu=1
>> >> --with-debugging=1 --with-scalar-type=real --with-precision=double
>> >> --download-f-blas-lapack
>> >>
>> >> The error message I get is:
>> >>
>> >> ============================================================
>> >> ===================
>> >> Configuring PETSc to compile on your system
>> >> ============================================================
>> >> ===================
>> >> TESTING: checkInclude from config.headers(config/
>> >> BuildSystem/config/headers.py:86) ******************************
>> >> *************************************************
>> >> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log
>> for
>> >> details):
>> >> ------------------------------------------------------------
>> >> -------------------
>> >> --with-thrust-dir=/usr/local/cuda-6.0/include/thrust did not work
>> >> ************************************************************
>> >> *******************
>> >>
>> >>
>> >> Did I miss something ?
>> >> My GPU is a GeForce Titan Black and I am using CUDA 6.0.
>> >>
>> >> Many thanks in advance for your help.
>> >> Christophe
>> >>
>> >>
>> >
>> > --
>> > Dominic Meiser
>> > Tech-X Corporation
>> > 5621 Arapahoe Avenue
>> > Boulder, CO 80303
>> > USA
>> > Telephone: 303-996-2036
>> > Fax: 303-448-7756
>> > www.txcorp.com
>> >
>> >
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>
--
What most experimenters take for granted before they begin their
experiments is infinitely more interesting than any results to which their
experiments lead.
-- Norbert Wiener
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