PaStiX crash

[Andreas Grassl]

Satish Balay schrieb:
> Perhaps you can try running in valgrind to see here the problem is.
> 
> You can also try --with-debugging=0 COPTFLAGS='-g -O' - and see if it
> crashes.  If so - run in a debugger to determine the problem.

here you find the output of valgrind:

http://pastebin.com/m16478dcf

It seems the problem is around the scotch library. Trying to substitute the
library with the working version from the debugging-branch did not work and I
found no options to change the ordering algorithm to e.g. (par)metis installed
for mumps

Any ideas?

Cheers,

ando

> 
> Satish
> 
> On Tue, 20 Oct 2009, Andreas Grassl wrote:
> 
>> Hello,
>>
>> I wanted to use PaStix and have the problem, that the debugging version works
>> and PETSc compiled with option --with-debugging=0 gives following error:
>>
>> what could be wrong?
>>
>>
>> +--------------------------------------------------------------------+
>> +              PaStiX : Parallel Sparse matriX package               +
>> +--------------------------------------------------------------------+
>>  Matrix size                                  7166 x 7166
>>  Number of nonzeros                           177831
>> +--------------------------------------------------------------------+
>> +  Options                                                           +
>> +--------------------------------------------------------------------+
>>        Version             :                  exported
>>        SMP_SOPALIN         :                  Defined
>>        VERSION MPI         :                  Defined
>>        PASTIX_BUBBLE       :                  Not defined
>>        STATS_SOPALIN       :                  Not defined
>>        NAPA_SOPALIN        :                  Defined
>>        TEST_IRECV          :                  Not defined
>>        TEST_ISEND          :                  Defined
>>        THREAD_COMM         :                  Not defined
>>        THREAD_FUNNELED     :                  Not defined
>>        TAG                 :                  Exact Thread
>>        FORCE_CONSO         :                  Not defined
>>        RECV_FANIN_OR_BLOCK :                  Not defined
>>        OUT_OF_CORE         :                  Not defined
>>        DISTRIBUTED         :                  Not defined
>>        FLUIDBOX            :                  Not defined
>>        METIS               :                  Not defined
>>        INTEGER TYPE        :                  int32_t
>>        FLOAT TYPE          :                  double
>> +--------------------------------------------------------------------+
>> Check : ordering                OK
>> Check : Sort CSC                OK
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably
>> memory access out of range
>> [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
>> [0]PETSC ERROR: or see
>> http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSC
>> ERROR: or try http://valgrind.org on linux or man libgmalloc on Apple to find
>> memory corruption errors
>> [0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run
>> [0]PETSC ERROR: to get more information on the crash.
>> [0]PETSC ERROR: --------------------- Error Message
>> ------------------------------------
>> [0]PETSC ERROR: Signal received!
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: Petsc Release Version 3.0.0, Patch 8, Fri Aug 21 14:02:12 CDT 2009
>> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
>> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
>> [0]PETSC ERROR: See docs/index.html for manual pages.
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: ./standalonesolver on a linux32-i named login.leo1 by c702174
>> Tue Oct 20 11:55:24 2009
>> [0]PETSC ERROR: Libraries linked from
>> /mnt/x4540/hpc-scratch/c702174/leo1/petsc/petsc-3.0.0-p8/linux32-intel-c-leo1/lib
>> [0]PETSC ERROR: Configure run at Tue Oct 20 00:39:27 2009
>> [0]PETSC ERROR: Configure options --with-scalar-type=real --with-debugging=0
>> --with-precision=double --with-shared=0 --with-mpi=1
>> --with-mpi-dir=/usr/site/hpc/x86_64/glibc-2.5/italy/openmpi/1.3.3/intel-11.0
>> --with-scalapack=1 --download-scalapack=ifneeded
>> --download-f-blas-lapack=ifneeded --with-blacs=1 --download-blacs=ifneeded
>> --with-parmetis=1 --download-parmetis=ifneeded --with-mumps=1
>> --download-mumps=ifneeded --with-spooles=1 --download-spooles=ifneeded
>> --with-superlu_dist=1 --download-superlu_dist=ifneeded --with-scotch=1
>> --download-scotch=ifneeded --with-pastix=1 --download-pastix=ifneeded
>> --with-umfpack=1 --download-umfpack=ifneeded PETSC_ARCH=linux32-intel-c-leo1
>> [0]PETSC ERROR:
>> ------------------------------------------------------------------------
>> [0]PETSC ERROR: User provided function() line 0 in unknown directory unknown file
>>
>>
>> Cheers,
>>
>> ando
>>
> 


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