trouble testing/running with gnu/5.1.0

[Jim Edwards]

Hi Wei-keng,

This is an IBM machine with a poe based version of mpich - nether
mpich2version nor mpichversion are available.   Since IBM has basically
abandoned poe I think that we can conclude that although it is mpich2 it's
also very old.

Thanks and thanks to Nick for confirming that gnu/5.1.0 is not the problem.


Jim

On Mon, Jul 20, 2015 at 1:33 PM, Wei-keng Liao <wkliao at eecs.northwestern.edu
> wrote:

> Hi, Jim
>
> From your config.log, I can see MPICH is used.
>
> Could you run command "mpich2version", which tells the MPICH version used
> in you MPI compiler, /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc
>
> If mpich2version is not available, please try mpichversion (this is for
> newer mpich).
>
> Wei-keng
>
> On Jul 20, 2015, at 1:53 PM, Jim Edwards wrote:
>
> > I think that you are correct I switched to pgi and got the same error -
> I can try on another platform.
> >
> > The pgi config.log is attached...
> >
> >
> > On Mon, Jul 20, 2015 at 12:48 PM, Wei-keng Liao <
> wkliao at eecs.northwestern.edu> wrote:
> > Hi, Jim
> >
> > I suspect it is caused by an old MPI.
> > Can you send me your config.log file?
> >
> > Wei-keng
> >
> > On Jul 20, 2015, at 12:36 PM, Jim Edwards wrote:
> >
> > > I am getting an error when trying to build with gnu/5.1.0
> > > ​the traceback looks like:
> > > #6  0x00000000014fb478 in ncmpii_in_swapn ()
> > > #7  0x00000000014cd6be in ncmpii_getput_vars ()
> > > #8  0x00000000014d9b64 in ncmpi_put_vara_int_all ()
> > > #9  0x00000000014baf57 in nfmpi_put_vara_int_all_ ()
> > > #10 0x00000000013f61e2 in __pionfput_mod_MOD_put_vara_1d_int ()
> > >
> > > If I try to run the tests with this build I get a hang in the
> sequentiol tests:
> > > poe  ./nc_test -v -d       .
> > >
> > >    2:*** Testing test_ncmpi_strerror            ...   33 good
> comparisons. ok
> > >
> > >    0:*** Testing test_ncmpi_strerror            ...   33 good
> comparisons. ok
> > >
> > >    1:*** Testing test_ncmpi_strerror            ...   33 good
> comparisons. ok
> > >
> > >    3:*** Testing test_ncmpi_strerror            ...   33 good
> comparisons. ok
> > >
> > >    0:
> > >
> > >    1:
> > >
> > >    2:
> > >
> > >    2: FAILURE at line 149 of test_read.c: remove of ./scratch.nc
> failed*** Testing test_ncmpi_open                ...
> > >
> > >    2: ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
> > >
> > >    0:*** TESTING C   ./nc_test for format CDF-1
>  ------ failed
> > >
> > >    0:
> > >
> > >    0: FAILURE at line 149 of test_read.c: remove of ./scratch.nc
> failed*** Testing test_ncmpi_open                ...
> > >
> > >    0: ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
> > >
> > >    0:
> > >
> > >    0:./nc_test: expects 0 failures ... Total number of failures: 1
> > >
> > >    1:*** TESTING C   ./nc_test for format CDF-1
>  ------ failed
> > >
> > >    1:
> > >
> > >    1: FAILURE at line 149 of test_read.c: remove of ./scratch.nc
> failed*** Testing test_ncmpi_open                ...
> > >
> > >    1: ### 1 FAILURES TESTING test_ncmpi_open! Stop ... ###
> > >
> > >    1:
> > >
> > >    1:./nc_test: expects 0 failures ... Total number of failures: 1
> > >
> > >    2:*** TESTING C   ./nc_test for format CDF-1
>  ------ failed
> > >
> > >    2:
> > >
> > >    2:
> > >
> > >    2:./nc_test: expects 0 failures ... Total number of failures: 1
> > >
> > >    3:*** Testing test_ncmpi_open                ...    5 good
> comparisons. ok
> > >
> > > and the parallel test fail in the build step with:
> > >
> > > glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90 -c -g  -O0
> -I../../src/lib  -I../../src/libf -I../../src/libf90  mcoll_testf.f90
> > >
> > > mcoll_testf.f90:257:22:
> > >
> > >
> > >
> > >          t1 = MPI_Wtime ( )
> > >
> > >                       1
> > >
> > > Error: Name 'mpi_wtime' at (1) is an ambiguous reference to
> 'mpi_wtime' from module 'mpi_constants'
> > >
> > > mcoll_testf.f90:292:22:
> > >
> > >
> > >
> > >          t2 = MPI_Wtime ( )
> > >
> > >                       1
> > >
> > > Error: Name 'mpi_wtime' at (1) is an ambiguous reference to
> 'mpi_wtime' from module 'mpi_constants'
> > >
> > > mcoll_testf.f90:313:20:
> > >
> > >
> > >
> > >        t3 = MPI_Wtime ( )
> > >
> > >                     1
> > >
> > > Error: Name 'mpi_wtime' at (1) is an ambiguous reference to
> 'mpi_wtime' from module 'mpi_constants'
> > >
> > > All with svn revision 2056​
> > >
> > >
> > >
> > > --
> > > Jim Edwards
> > >
> > > CESM Software Engineer
> > > National Center for Atmospheric Research
> > > Boulder, CO
> >
> >
> >
> >
> > --
> > Jim Edwards
> >
> > CESM Software Engineer
> > National Center for Atmospheric Research
> > Boulder, CO
> > <config.log.gz>
>
>


-- 
Jim Edwards

CESM Software Engineer
National Center for Atmospheric Research
Boulder, CO
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