[Nek5000-users] Nek5000-users Digest, Vol 78, Issue 9
nek5000-users at lists.mcs.anl.gov
nek5000-users at lists.mcs.anl.gov
Sun Aug 30 10:34:15 CDT 2015
hi,
I looked at the rea file, and I see that the whole part about boundary
conditions is missing:
***** FLUID BOUNDARY CONDITIONS *****
P 1 1 241.0000 3.000000 0.0000000E+00 0.0000000E+00
0.0000000E+00
E 1 2 2.000000 4.000000 0.0000000E+00 0.0000000E+00
0.0000000E+00
E 1 3 17.00000 1.000000 0.0000000E+00 0.0000000E+00
0.0000000E+00
P 1 4 16.00000 2.000000 0.0000000E+00 0.0000000E+00
0.0000000E+00
...
This is what causes the error that you cite below. Then, the line to
load the restart file should be similar to the following:
1 PRESOLVE/RESTART OPTIONS *****
eddy_uv0.f00001
Then it should work.
Best regards,
Philipp
Quoting nek5000-users at lists.mcs.anl.gov:
> Hi, all
>
> sorry I have attached the wrong .rea file, the .rea file is renewed
> in this mail.
>
> To save
>
> Sorry!!
>
>
>
>
>
> On 08/29/2015 03:51 PM, Allen wrote:
>> Hi, Phillip
>>
>> Thanks for your reply, but the dos2unix actually does not help. And
>> I tried a lot to fix it up, including copy existing command from
>> other examples .rea files to eliminate the error that might have
>> something to do with the "CR and LF" stuff (I know little about
>> these line breaks).
>>
>> I am in Ubuntu, should this this be due to the failue of reading
>> restart parameters?he
>>
>> I have attached the .rea file. It would be greatly that you can
>> have a look and give some advice.
>>
>> Thanks in advance.
>>
>> and have a nice weekend!
>>
>>
>> from Allen
>>
>>
>>
>> On 08/29/2015 01:00 AM, nek5000-users-request at lists.mcs.anl.gov wrote:
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>>> Today's Topics:
>>>
>>> 1. restart a case got an error: Error reading initial
>>> condition/drive force data (nek5000-users at lists.mcs.anl.gov)
>>> 2. Re: restart a case got an error: Error reading initial
>>> condition/drive force data (nek5000-users at lists.mcs.anl.gov)
>>>
>>>
>>> ----------------------------------------------------------------------
>>>
>>> Message: 1
>>> Date: Fri, 28 Aug 2015 11:22:34 +0800
>>> From: nek5000-users at lists.mcs.anl.gov
>>> To: nek5000-users at lists.mcs.anl.gov
>>> Subject: [Nek5000-users] restart a case got an error: Error reading
>>> initial condition/drive force data
>>> Message-ID:
>>> <mailman.6382.1440732161.24727.nek5000-users at lists.mcs.anl.gov>
>>> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>>>
>>> Hi, Nekers:
>>>
>>> I recently want to do some simulation with Nek, so I followed the
>>> tutorial for the eddy_uv case
>>>
>>> I have run the case without problem, but when I want to try the restart
>>> utility with the following modification instructed by the manual
>>> ----------------------------------------------------------------------------- 1 PRESOLVE/RESTART OPTIONS
>>> *****
>>> eddy_uv0.f00010
>>> ----------------------------------------------------------------------------- affter changing for a new case name and recompile, I started the
>>> restart
>>> run, but the logfile gives the following error :
>>> ----------------------------------------------------------------------------- mapping elements to
>>> processors
>>> 2 86 86 256 256 NELV
>>> 0 85 85 256 256 NELV
>>> 1 85 85 256 256 NELV
>>> RANK 0 IEG 133 134 135 136 149 150 151 152
>>> 161 162 165 166 167 168 177 178
>>> 179 181 182 183 184 193 194 195
>>> 196 197 198 199 200 201 202 203
>>> 204 205 206 207 208 209 210 211
>>> 212 213 214 215 216 217 218 219
>>> 220 221 222 223 224 225 226 227
>>> 228 229 230 231 232 233 234 235
>>> 236 237 238 239 240 241 242 243
>>> 244 245 246 247 248 249 250 251
>>> 252 253 254 255 256
>>> element load imbalance: 1 85 86
>>> done :: mapping elements to processors
>>>
>>> Error reading initial condition/drive force data
>>> aborting in routine rdicdf.
>>> EXIT: rdicdf error 1
>>>
>>> call exitt: dying ...
>>>
>>> backtrace(): obtained 9 stack frames.
>>> ./nek5000(print_stack_+0x18) [0x500ff8]
>>> ./nek5000(exitt_+0x1cc) [0x5be5ec]
>>> ./nek5000(exitti_+0x117) [0x5c1537]
>>> ./nek5000(rdicdf_+0x1e7) [0x442387]
>>> ./nek5000(readat_+0x35f) [0x44951f]
>>> ./nek5000(nek_init_+0x75) [0x41ae25]
>>> ./nek5000(main+0x24) [0x419d84]
>>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f26a5be276d]
>>> ./nek5000() [0x419dc9]
>>> -------------------------------------------------------------------------------------------------------------------- I have searched the post list, but I only found very vague statement
>>> of
>>> this
>>> problem:_http://lists.mcs.anl.gov/pipermail/nek5000-users/2011-October/001560.html_ Hope some one can give me some hint, I actually do exactly what
>>> the
>>> manual does, which makes me confused.
>>>
>>> Thanks, hope it is a minor mistake.
>>>
>>> from Allen
>>> -------------- next part --------------
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>>>
>>> ------------------------------
>>>
>>> Message: 2
>>> Date: Fri, 28 Aug 2015 10:43:10 +0200
>>> From: nek5000-users at lists.mcs.anl.gov
>>> To: nek5000-users at lists.mcs.anl.gov
>>> Subject: Re: [Nek5000-users] restart a case got an error: Error
>>> reading initial condition/drive force data
>>> Message-ID:
>>> <mailman.6397.1440751408.24727.nek5000-users at lists.mcs.anl.gov>
>>> Content-Type: text/plain; charset=windows-1252; format=flowed
>>>
>>> not sure it helps, but we had a similar problem recently when a rea file
>>> went trough Windows and Linux, adding CR and LF as line breaks. As far
>>> as I remember, using dos2unix of the file helped. Also, a tab character
>>> (ASCII 9) somewhere on that line gave some problems.
>>>
>>> Good luck, Philipp
>>>
>>> On 2015-08-28 05:22, nek5000-users at lists.mcs.anl.gov wrote:
>>>> Hi, Nekers:
>>>>
>>>> I recently want to do some simulation with Nek, so I followed the
>>>> tutorial for the eddy_uv case
>>>>
>>>> I have run the case without problem, but when I want to try the restart
>>>> utility with the following modification instructed by the manual
>>>> ----------------------------------------------------------------------------- 1 PRESOLVE/RESTART OPTIONS
>>>> *****
>>>> eddy_uv0.f00010
>>>> ----------------------------------------------------------------------------- affter changing for a new case name and recompile, I started the
>>>> restart
>>>> run, but the logfile gives the following error :
>>>> ----------------------------------------------------------------------------- mapping elements to
>>>> processors
>>>> 2 86 86 256 256 NELV
>>>> 0 85 85 256 256 NELV
>>>> 1 85 85 256 256 NELV
>>>> RANK 0 IEG 133 134 135 136 149 150 151 152
>>>> 161 162 165 166 167 168 177 178
>>>> 179 181 182 183 184 193 194 195
>>>> 196 197 198 199 200 201 202 203
>>>> 204 205 206 207 208 209 210 211
>>>> 212 213 214 215 216 217 218 219
>>>> 220 221 222 223 224 225 226 227
>>>> 228 229 230 231 232 233 234 235
>>>> 236 237 238 239 240 241 242 243
>>>> 244 245 246 247 248 249 250 251
>>>> 252 253 254 255 256
>>>> element load imbalance: 1 85 86
>>>> done :: mapping elements to processors
>>>>
>>>> Error reading initial condition/drive force data
>>>> aborting in routine rdicdf.
>>>> EXIT: rdicdf error 1
>>>>
>>>> call exitt: dying ...
>>>>
>>>> backtrace(): obtained 9 stack frames.
>>>> ./nek5000(print_stack_+0x18) [0x500ff8]
>>>> ./nek5000(exitt_+0x1cc) [0x5be5ec]
>>>> ./nek5000(exitti_+0x117) [0x5c1537]
>>>> ./nek5000(rdicdf_+0x1e7) [0x442387]
>>>> ./nek5000(readat_+0x35f) [0x44951f]
>>>> ./nek5000(nek_init_+0x75) [0x41ae25]
>>>> ./nek5000(main+0x24) [0x419d84]
>>>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f26a5be276d]
>>>> ./nek5000() [0x419dc9]
>>>> -------------------------------------------------------------------------------------------------------------------- I have searched the post list, but I only found very vague statement
>>>> of
>>>> this
>>>> problem:_http://lists.mcs.anl.gov/pipermail/nek5000-users/2011-October/001560.html_ Hope some one can give me some hint, I actually do exactly what
>>>> the
>>>> manual does, which makes me confused.
>>>>
>>>> Thanks, hope it is a minor mistake.
>>>>
>>>> from Allen
>>>>
>>>>
>>>> _______________________________________________
>>>> Nek5000-users mailing list
>>>> Nek5000-users at lists.mcs.anl.gov
>>>> https://lists.mcs.anl.gov/mailman/listinfo/nek5000-users
>>>>
>>>
>>> ------------------------------
>>>
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>>> Nek5000-users at lists.mcs.anl.gov
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>>>
>>> End of Nek5000-users Digest, Vol 78, Issue 9
>>> ********************************************
>>
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